View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5710_low_14 (Length: 228)

Name: NF5710_low_14
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5710_low_14
NF5710_low_14
[»] chr8 (1 HSPs)
chr8 (17-207)||(1936546-1936739)
[»] chr5 (1 HSPs)
chr5 (129-203)||(34819621-34819695)
[»] chr2 (1 HSPs)
chr2 (129-203)||(37863950-37864024)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 1936546 - 1936739
Alignment:
Q  17 catcatcattaaatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnnn-cacgagtttaacacaaaaaagagagaatttag 115  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||         ||||||||||||||||||||||||||||||||    
T  1936546 catcatcattaaatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaatttag 1936645  T
Q  116 cnnnnnnnnnn--tagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgag 207  Q
    |            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1936646 cacaaaaaaaaaatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgag 1936739  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
Q  129 gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt 203  Q
    |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||   |||||||| ||||||    
T  34819621 gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt 34819695  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
Q  129 gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt 203  Q
    |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||||   |||||||| ||||||    
T  37863950 gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt 37864024  T

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