View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5710_low_3 (Length: 439)
Name: NF5710_low_3
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Complemental strand, 47212819 - 47212410
Alignment:
| Q |
12 |
atgaacaagatccaaccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212819 |
atgaacaagatccaaccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagt |
47212720 |
T |
|
| Q |
112 |
tgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212719 |
tgacacaaactgttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgc |
47212620 |
T |
|
| Q |
212 |
tgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47212619 |
tgacacaaaaatacaaaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatc |
47212520 |
T |
|
| Q |
312 |
accatttgtgacaagaacatttgaacaccggcttcgagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagataacat |
411 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47212519 |
accatttgtgacaacaacatttgaacaccagcttccagtaatagctttcgacgaccaagtttatccactgaatatattgaaactatagttgagatgacat |
47212420 |
T |
|
| Q |
412 |
tgattgcacc |
421 |
Q |
| |
|
|||||||||| |
|
|
| T |
47212419 |
tgattgcacc |
47212410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 47186077 - 47185995
Alignment:
| Q |
126 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
208 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
47186077 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47185995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 47198616 - 47198534
Alignment:
| Q |
126 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
208 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
47198616 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
47198534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 27 - 376
Target Start/End: Original strand, 748487 - 748836
Alignment:
| Q |
27 |
ccagagaagaaaaagaagataccaaacttgaaatagcaaagcattgaaaggaaagcttgtgcaatgacagcagtgaagaggaagttgacacaaactgtta |
126 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| | ||| | ||| || || ||||| || ||||||||| ||||| | | ||||||||||||||| | |
|
|
| T |
748487 |
ccagagaagaacaagaagattccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtga |
748586 |
T |
|
| Q |
127 |
cactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaatgctgacacaaaaataca |
226 |
Q |
| |
|
|||||||||| || || |||||||| ||||||||| |||||||||||||||||||| | || |||||||| ||||| ||||| || ||||| ||| | || |
|
|
| T |
748587 |
cactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaaggcagacacgaaagtgca |
748686 |
T |
|
| Q |
227 |
aaccataacaactacaagagctgcatacccttttgagagttcctcagaatgatccttcactttgattcctagtacaattgctatcaccatttgtgacaag |
326 |
Q |
| |
|
|||| | ||| |||| |||||| |||||||| || || ||||||||||| |||| ||||| || || | ||||||||||| ||||| |||||| |
|
|
| T |
748687 |
taccaagataacaacaaatattgcatagccttttgaaagatcgtcagaatgatcagtcaccttgatcccaagaatgattgctatcacaatttgagacaag |
748786 |
T |
|
| Q |
327 |
aacatttgaacaccggcttcgagtaatagctttcgacgaccaagtttatc |
376 |
Q |
| |
|
|||||||| ||||||||||| | | || | | ||||||||||||||||| |
|
|
| T |
748787 |
aacatttgtacaccggcttccaacagtaacatacgacgaccaagtttatc |
748836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 41414021 - 41414096
Alignment:
| Q |
128 |
actttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccat |
203 |
Q |
| |
|
|||||| ||||| ||||| | |||| ||||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
41414021 |
actttgccctgctgaacggatttctaatggaaatatctcacttggaattgtccaaccaagaggaccccatgaccat |
41414096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 36202786 - 36202701
Alignment:
| Q |
124 |
ttacactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaat |
209 |
Q |
| |
|
|||||||||| ||||||||||| |||| | ||| || |||||||| |||| | |||| |||| |||||||||||||| |||||| |
|
|
| T |
36202786 |
ttacactttgagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaat |
36202701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University