View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_low_4 (Length: 395)
Name: NF5710_low_4
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 42638217 - 42637918
Alignment:
| Q |
1 |
tgtgcggtctgttggctaagtttgctcttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggc |
100 |
Q |
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| T |
42638217 |
tgtgcggtctgttggctaagtttgctcttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggc |
42638118 |
T |
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| Q |
101 |
tttatggtagtgagaatgctgtactgatgaaacatgtagattttaaatcctgatttccatatgttgactgatacattaatgcttcaacttatataaatat |
200 |
Q |
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| T |
42638117 |
tttatggtagtgagaatgctgtactgatgaaacatgtagattttaaatcctgatttccatatgttgactgatacattaatgcttcaacttatataaatat |
42638018 |
T |
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| Q |
201 |
gttatgtttagcttggttcaatatcactgttcctatattatttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccac |
300 |
Q |
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| T |
42638017 |
gttatgtttagcttggttcaatatcactgttcgtata----ttatttgggatagcgttctaatttataaggaatcaaatatcacttcataagacttccac |
42637922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 305
Target Start/End: Original strand, 42566560 - 42566834
Alignment:
| Q |
27 |
cttgttcgcgacactgctaacgctgcatgagtaggtcctaagtgcaactgatacacatcattagtttttccggctttatggtagtgagaatgctgtactg |
126 |
Q |
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| T |
42566560 |
cttgttcgcgacactgctaaagctgcatgagtaggtcctaagtgcaactgatacacatcattactttttctggttttatggtagtgagaatgttgtactg |
42566659 |
T |
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| Q |
127 |
atgaaacatgtagattttaaatcctgatttccatatgttgactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatca |
226 |
Q |
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| T |
42566660 |
atgaaacatgtagattttaaattctgatttccatatgtttactgatacattaatgcttcaacttatataaatatgttatgtttagcttggttcaatatca |
42566759 |
T |
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| Q |
227 |
ctgttcctatattatttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccacttctg |
305 |
Q |
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| T |
42566760 |
ctgttcctata----ttatttggtatagcattctaatttataaggaatcaagtatcacttcaaaagacatccacttctg |
42566834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 42566866 - 42566941
Alignment:
| Q |
303 |
ctgggagacgagttatacttatattcatccctaactcaactctgaatctagaaggtcattcttttgatcctatttg |
378 |
Q |
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| T |
42566866 |
ctgggagacgagttatacttatattcatccctaactcaactctgaatcttgaaggtcattcttttgatcctatttg |
42566941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 42637885 - 42637813
Alignment:
| Q |
304 |
tgggagacgagttatacttatattcatccctaactcaactctgaatctagaaggtcattcttttgatcctattt |
377 |
Q |
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| T |
42637885 |
tgggagatgtgttatatttatattcatcactaactcaactct-aaagttgaaggccattcttttcatcctattt |
42637813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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