View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5710_low_6 (Length: 332)
Name: NF5710_low_6
Description: NF5710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5710_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 38390684 - 38390380
Alignment:
| Q |
11 |
cacagatccatgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatga |
110 |
Q |
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| T |
38390684 |
cacagatccatgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatga |
38390585 |
T |
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| Q |
111 |
tatacttcaacatagataggattccataagtttgtatgcttctttcataggttgtatgttctttaatttcc-aaaacaacatgtttcctgcggcaaatac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38390584 |
tatacttcaacatagataggattccataagtttgtatgcttctttcataggttgtatattctttaatttccaaaaacaacatgtttcctgcggcaaatac |
38390485 |
T |
|
| Q |
210 |
aataacagcaacaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaaga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38390484 |
aataacagcaacaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaaga |
38390385 |
T |
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| Q |
310 |
gtcat |
314 |
Q |
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||||| |
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| T |
38390384 |
gtcat |
38390380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 39591946 - 39591990
Alignment:
| Q |
16 |
atccatgaaaaaagctttcgctagtcctaccagcatctcccctgt |
60 |
Q |
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||||||||||| ||| || ||| |||||||||||||||||||||| |
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| T |
39591946 |
atccatgaaaagagccttagctggtcctaccagcatctcccctgt |
39591990 |
T |
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