View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5711_low_1 (Length: 520)
Name: NF5711_low_1
Description: NF5711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5711_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 202 - 503
Target Start/End: Original strand, 40684391 - 40684706
Alignment:
| Q |
202 |
tatggtgttgctgtagccactatttgacaacactttgtaatccagtgcattgcagaacaataatagcaatatgttcaaattccgctaagctataacacta |
301 |
Q |
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| T |
40684391 |
tatggtgttgctatagccactatttgacaacactttgtaattaagtgcattgcagaacaataatagcaatatgttcaaattccgctatgctacaacacta |
40684490 |
T |
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| Q |
302 |
tnnnnnnnnnngcagaatgctgtcattatacgatcgaaaaagccacagttagagacc----------------atgcactgtttgaagatggaaacaact |
385 |
Q |
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| T |
40684491 |
tcaaaaaa---gcagaatgctgtcattatacgatcgaaaaagccacagttagagaccttaaaatgtattatagatgcattgtttgaagatggaaacaact |
40684587 |
T |
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| Q |
386 |
tcggctttggaatttgtattcggaacagccagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaag |
484 |
Q |
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| T |
40684588 |
tcggctttggaatttgtattcggaacagccagggagttatggtccaagcacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaag |
40684687 |
T |
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| Q |
485 |
aggtaccttataaacaaga |
503 |
Q |
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| T |
40684688 |
aggtaccttataaacaaga |
40684706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 40684233 - 40684390
Alignment:
| Q |
6 |
gtatataattctttgggtgacatctaggatgagggtccaactaaacccctcacacatgtattagcaaaattgaccatacgattttaagcaaaatcattgc |
105 |
Q |
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| T |
40684233 |
gtatataattatttgggtgacatctaggatgagggtccaactaaacccctcacacatgtactagcaaaattgaccatacgattttaagcaaaatcattgc |
40684332 |
T |
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| Q |
106 |
caacggcttagatgttagattgttactactatttagtctcctttctaaagtgatgtgt |
163 |
Q |
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| T |
40684333 |
caacggctgagatgttagattgttactactatttagtctcctttctaaagtgatgtgt |
40684390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 445 - 503
Target Start/End: Original strand, 40679516 - 40679574
Alignment:
| Q |
445 |
ggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaaga |
503 |
Q |
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| T |
40679516 |
ggtttataggaacaccttcgccaagtgaagctgaagaaagaggtagattataaacaaga |
40679574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 479
Target Start/End: Original strand, 40675657 - 40675722
Alignment:
| Q |
415 |
cagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaa |
479 |
Q |
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| T |
40675657 |
cagggagttatggtccaagcacggaatatgtggtttgtaggaacaccttcgccatgtgaagctgaa |
40675722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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