View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5712-Insertion-2 (Length: 702)

Name: NF5712-Insertion-2
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5712-Insertion-2
NF5712-Insertion-2
[»] chr5 (4 HSPs)
chr5 (7-676)||(39954050-39954723)
chr5 (182-620)||(1685210-1685651)
chr5 (153-190)||(39953963-39954000)
chr5 (632-668)||(35539209-35539245)
[»] chr1 (4 HSPs)
chr1 (182-620)||(52037551-52037992)
chr1 (517-619)||(13624095-13624197)
chr1 (632-668)||(17672393-17672429)
chr1 (632-668)||(18815133-18815169)
[»] chr7 (3 HSPs)
chr7 (182-621)||(37477958-37478400)
chr7 (182-502)||(21886748-21887071)
chr7 (632-667)||(3795718-3795753)
[»] chr3 (2 HSPs)
chr3 (182-619)||(41053248-41053688)
chr3 (632-669)||(48519654-48519691)
[»] chr2 (4 HSPs)
chr2 (269-605)||(44800187-44800527)
chr2 (273-529)||(26456670-26456918)
chr2 (7-64)||(32709594-32709653)
chr2 (182-225)||(44800105-44800148)
[»] chr8 (3 HSPs)
chr8 (269-529)||(43382073-43382326)
chr8 (632-669)||(32847203-32847240)
chr8 (632-669)||(41531768-41531805)
[»] chr6 (4 HSPs)
chr6 (519-618)||(11168694-11168793)
chr6 (520-606)||(11207439-11207525)
chr6 (411-481)||(4158286-4158356)
chr6 (637-669)||(11207668-11207700)
[»] scaffold0759 (1 HSPs)
scaffold0759 (632-668)||(3423-3459)
[»] scaffold0056 (2 HSPs)
scaffold0056 (371-454)||(52710-52793)
scaffold0056 (371-454)||(57823-57906)
[»] scaffold0376 (1 HSPs)
scaffold0376 (632-668)||(10783-10819)


Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 7 - 676
Target Start/End: Original strand, 39954050 - 39954723
Alignment:
Q  7 aggcagtgcatgattattgaggtttagataattgatgacacaaaactttctacctgtagcatcagggaaaatttacataaaagcatagcaagtattttaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954050 aggcagtgcatgattattgaggtttagataattgatgacacaaaactttctacctgtagcatcagggaaaatttacataaaagcatagcaagtattttaa 39954149  T
Q  107 cttttgcattatagtggaaaatttacagaaaagcattgcaagtattctatctattttgttataatcatcaaaactttaatggaaggttaatgagatttta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39954150 cttttgcattatagtggaaaatttacagaaaagcattgcaagtattctatctattttgttataatcatcaaaacttgaatggaaggttaatgagatttta 39954249  T
Q  207 tagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcagtggttaggatggtttatgcgtctcg 306  Q
    |||||||||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954250 tagctggtctgctccgttgtttttttttgtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcagtggttaggatggtttatgcgtctcg 39954349  T
Q  307 gaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgcggtgtagtagaatctacatatatta 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39954350 gaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagttagtgaaatacttctctgcaatcgcggtgtagtagaatctacatatatta 39954449  T
Q  403 agacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagctgttgttgaatttaaa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  39954450 agacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataattttagttgttgttgaatttata 39954549  T
Q  503 gaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaa 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  39954550 gaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttagattttatattggtaaattggtttcatttgtcttattcaa 39954649  T
Q  603 acatgtattaatgattttcnnnnnnnctgtattcaacccgtgcttcgcacgggtttataactagtttgtgaaaa 676  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  39954650 acatgtattaatgattttcaaaaaaaatgtattcaacccgtgcttcgcacgggtttataactagtttgtgaaaa 39954723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 182 - 620
Target Start/End: Complemental strand, 1685651 - 1685210
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcag 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||         |||||| |||| || |||| |||| || ||||| |||||||||||||    
T  1685651 ttaatggaaggttaatgagattttgtagctggtctgctcggttgtttttatt-gtgtcattcttcggctgtcatgctcatctgcaccggtgtttttgcag 1685553  T
Q  282 tggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgc 377  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  1685552 tggttaggatggtttatgtgtctcggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgc 1685453  T
Q  378 ggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaat 477  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  1685452 ggtgtagtagaatctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaat 1685353  T
Q  478 aattttagctgttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgata 577  Q
    |||| ||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||   |    
T  1685352 aattctagctattgttgaatttaaataattaagtgatggtccttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttagga 1685253  T
Q  578 aattggtttcatttgtcttattcaaacatgtattaatgatttt 620  Q
    |||  |||||||||| ||||||||||||| || ||| ||||||    
T  1685252 aatcagtttcatttgacttattcaaacatatagtaaggatttt 1685210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 39953963 - 39954000
Alignment:
Q  153 ctatctattttgttataatcatcaaaactttaatggaa 190  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  39953963 ctatctatttggttataattatcaaaactttaatggaa 39954000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 632 - 668
Target Start/End: Complemental strand, 35539245 - 35539209
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagtt 668  Q
    |||| |||||||||||||||||||||| |||||||||    
T  35539245 tattgaacccgtgcttcgcacgggtttgtaactagtt 35539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 182 - 620
Target Start/End: Complemental strand, 52037992 - 52037551
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcag 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||         |||||| |||| || |||| |||| || |||||  ||||||||||||    
T  52037992 ttaatggaaggttaatgagattttgtagctggtctgctcggttgtttttatt-gtgtcattcttcggctgtcatgctcatctgcaccagtgtttttgcag 52037894  T
Q  282 tggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgc 377  Q
    |||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  52037893 tggttaggatggtttatgtgtctaggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgc 52037794  T
Q  378 ggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaat 477  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  52037793 ggtgtagtagaatctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaat 52037694  T
Q  478 aattttagctgttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgata 577  Q
    |||| ||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||   |    
T  52037693 aattctagctattgttgaatttaaataattaagtgatggtccttatttagtgccgtaacattttgggattggcttagtacacttggattttatcttagga 52037594  T
Q  578 aattggtttcatttgtcttattcaaacatgtattaatgatttt 620  Q
    |||  |||||||||| ||||||||||||| || ||| ||||||    
T  52037593 aatcagtttcatttgacttattcaaacatatagtaaggatttt 52037551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 517 - 619
Target Start/End: Original strand, 13624095 - 13624197
Alignment:
Q  517 tccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatga 616  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||   ||||  |||||||||| ||||||||||||| || ||| ||    
T  13624095 tccttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaagga 13624194  T
Q  617 ttt 619  Q
    |||    
T  13624195 ttt 13624197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 632 - 668
Target Start/End: Original strand, 17672393 - 17672429
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagtt 668  Q
    |||| |||||||||||||||||||||| |||||||||    
T  17672393 tattgaacccgtgcttcgcacgggtttgtaactagtt 17672429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 632 - 668
Target Start/End: Original strand, 18815133 - 18815169
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagtt 668  Q
    |||| |||||||||||||||||||||| |||||||||    
T  18815133 tattaaacccgtgcttcgcacgggtttgtaactagtt 18815169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 182 - 621
Target Start/End: Complemental strand, 37478400 - 37477958
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcag 281  Q
    |||||||||||||||||||||||| |||||||||||||||||||         |||||| |||| || |||| |||| || |||||  ||||||||||||    
T  37478400 ttaatggaaggttaatgagattttgtagctggtctgctcggttgtttttatt-gtgtcattcttcggctgtcatgctcatctgcacctgtgtttttgcag 37478302  T
Q  282 tggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgc 377  Q
    |||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  37478301 tggttaggatggtttatgtgtcttggaagttggaattggatcaagctgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgc 37478202  T
Q  378 ggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaat 477  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  37478201 ggtgtagtagaatctacatatattaggacttttgttggtatcttgagatgtttaggatctaattattcaagtatatggtgtgatgttaattggcttgaat 37478102  T
Q  478 aattttagctgttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgata 577  Q
    |||| ||||| |||||||||||||| |||||| |||||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| ||   |    
T  37478101 aattctagctattgttgaatttaaataattaagtgatggtccttatttactgcagtaacattttgggattgacttagtacatttggattttatcttagga 37478002  T
Q  578 aattggtttcatttgtcttattcaaacatgtattaatgattttc 621  Q
    |||  |||||||||| ||||||||||||| || ||| |||||||    
T  37478001 aatcagtttcatttgacttattcaaacatatagtaaggattttc 37477958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 182 - 502
Target Start/End: Complemental strand, 21887071 - 21886748
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcag 281  Q
    |||||||||||||||||||||||| ||||||||||||| |||||         |||||| |||| || |||| |||| || ||||| |||||||||| |     
T  21887071 ttaatggaaggttaatgagattttgtagctggtctgcttggttgtttttatt-gtgtcattcttcggctgtcatgctcatctgcaccggtgtttttgtac 21886973  T
Q  282 tggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgc 377  Q
    | ||||||||| |||||| |||||| || |||||||||||||||  |||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  21886972 tagttaggatgatttatgtgtctcgtaagttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttctctgcaatcgc 21886873  T
Q  378 ggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaat 477  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  21886872 ggtgtagtagaatctacatatattaggacttttgttggtatcttgagatgtttagggtctaattattcaagtatatggtgtgatgttaattggcttgaat 21886773  T
Q  478 aattttagctgttgttgaatttaaa 502  Q
    |||| ||||| ||||||||||||||    
T  21886772 aattctagctattgttgaatttaaa 21886748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 667
Target Start/End: Original strand, 3795718 - 3795753
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagt 667  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3795718 tattcaacccgtgcttcgcacgggtttgtaactagt 3795753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 182 - 619
Target Start/End: Original strand, 41053248 - 41053688
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttgnnnnnnnnngtgtcagtctttggttgtcctgcttatatgcactggtgtttttgcag 281  Q
    |||||||||| ||||||||||||| |||||||||||||||||||         |||||| |||| || |||| |||| || ||||| |||||||||||||    
T  41053248 ttaatggaagtttaatgagattttgtagctggtctgctcggttgtttttatt-gtgtcattcttcggctgtcatgctcatctgcaccggtgtttttgcag 41053346  T
Q  282 tggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagt----gaaatacttctctgcaatcgc 377  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||    ||||||||| |||| ||||||    
T  41053347 tggttaggatggtttatgtgtctcggaagttggaattggatcaagttgcttgagtgttgtccgatacacaacagttggtgaaatacttatctgtaatcgc 41053446  T
Q  378 ggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaat 477  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  41053447 ggtgtagtataatctacatatattaggacttttgttggtatcttgagatgtttagggtctaattattcaagtatatggtgtgatgttaattggcttgaat 41053546  T
Q  478 aattttagctgttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgata 577  Q
    |||| ||||| |||||||||||||| |||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||   |    
T  41053547 aattctagctattgttgaatttaaataattaagtgatggtccttatttagtgcggtaacattttgggattggcttagtacacttggattttatcttagga 41053646  T
Q  578 aattggtttcatttgtcttattcaaacatgtattaatgattt 619  Q
    ||| |||||||||||||||||||| |||| || ||| |||||    
T  41053647 aatcggtttcatttgtcttattcagacatatagtaaggattt 41053688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 632 - 669
Target Start/End: Complemental strand, 48519691 - 48519654
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagttt 669  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  48519691 tattcaacccgtgcttcgcacgggtttgtaactagttt 48519654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 269 - 605
Target Start/End: Original strand, 44800187 - 44800527
Alignment:
Q  269 ggtgtttttgcagtggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaaca----gtgaaatact 364  Q
    |||||||||||||||||||| |||||||||| ||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||||    ||||||||||    
T  44800187 ggtgtttttgcagtggttagaatggtttatgtgtctcagaagttggaattggatcaagctgcttgagcgttgttcgatacacaacaattggtgaaatact 44800286  T
Q  365 tctctgcaatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgtt 464  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||||||| ||| |||||    
T  44800287 tctctgcaatcgcggtatagtagaatctacatatattaggacttttgttggtatcttgagatgtttagggtctaatcgttcaagtatatggtgtgatgtt 44800386  T
Q  465 aattggcttgaataattttagctgttgttgaatttaaagaattaaatgatggtccttatttagtgctgtaacattttaggattgacttagtacacttgga 564  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  44800387 aattggcttgaataattctagttgttgttgaatttaaataattaagtgatggtccttatttagtgcggtaacattttggaattgacttagtacacttgga 44800486  T
Q  565 ttttatattgataaattggtttcatttgtcttattcaaaca 605  Q
    |||||| ||  ||||| ||||||||||||||||||||||||    
T  44800487 ttttatcttagtaaatcggtttcatttgtcttattcaaaca 44800527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 273 - 529
Target Start/End: Original strand, 26456670 - 26456918
Alignment:
Q  273 tttttgcagtggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagtgaaatacttctctgca 372  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||| |||||| ||||||||  | ||||  |  |||||||| |||||||||    
T  26456670 tttttgcagtggttaggatggtttatgcgtct--------ggaattggatcaagctgcttaagtgttgtgtggtacaatag-gtgaaatatttctctgca 26456760  T
Q  373 atcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggct 472  Q
    |||| ||||||||||||||  |||| |||| ||||||||||||||||||||||| |||||||||| | | || ||||||||| | | |||||||||| ||    
T  26456761 atcgtggtgtagtagaatcagcatacattaggacttttgctggtatcttgagatttttagggtctgactgttgaagtatatggtctcatgttaattgcct 26456860  T
Q  473 tgaataatt-ttagctgttgttgaatttaaagaattaaatgatggtccttatttagtg 529  Q
    |||| ||||  || || |||| ||||| |||| || || || ||||||||||| ||||    
T  26456861 tgaagaattcctaactattgtggaattgaaagcataaagtggtggtccttattaagtg 26456918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 32709594 - 32709653
Alignment:
Q  7 aggcagtgcatgattattgaggtttagataat--tgatgacacaaaactttctacctgta 64  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||| |||| |||||||    
T  32709594 aggcagtgcatgattattgaggttcagataattgtgatgacacaaaaatttcaacctgta 32709653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 44800105 - 44800148
Alignment:
Q  182 ttaatggaaggttaatgagattttatagctggtctgctcggttg 225  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||    
T  44800105 ttaatggaagattaatgagattttgtagttggtctgctcggttg 44800148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 269 - 529
Target Start/End: Original strand, 43382073 - 43382326
Alignment:
Q  269 ggtgtttttgcagtggttaggatggtttatgcgtctcggaaattggaattggatcaaactgcttgagtgttgtccgatacacaacagtgaaatacttctc 368  Q
    ||||||||||||||||||||||||||||||| ||||       |||||||||||||| |||||| |||||| | ||||||   |  |||||||| || ||    
T  43382073 ggtgtttttgcagtggttaggatggtttatgtgtct-------tggaattggatcaagctgcttaagtgttatgcgatacgatag-gtgaaatatttatc 43382164  T
Q  369 tgcaatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaatt 468  Q
    |||||||| ||||||||||||||  |||| |||| |||||| |||||||||||||||| |||| ||| | |||||| ||||||| | | | |||||||||    
T  43382165 tgcaatcgtggtgtagtagaatcagcatacattaggactttagctggtatcttgagatttttatggtttgattattgaagtatacggtctgatgttaatt 43382264  T
Q  469 ggcttgaataatt-ttagctgttgttgaatttaaagaattaaatgatggtccttatttagtg 529  Q
    | |||||| ||||  ||||| |||| ||||| |||| || || |||||||||||||| ||||    
T  43382265 gccttgaagaattcctagctattgtggaattgaaagcataaagtgatggtccttattaagtg 43382326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 669
Target Start/End: Original strand, 32847203 - 32847240
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagttt 669  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  32847203 tattcaacccgtgctttgcacgggtttgtaactagttt 32847240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 632 - 669
Target Start/End: Complemental strand, 41531805 - 41531768
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagttt 669  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  41531805 tattcaacccgtgtttcgcacgggtttgtaactagttt 41531768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 618
Target Start/End: Original strand, 11168694 - 11168793
Alignment:
Q  519 cttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgatt 618  Q
    ||||| |||||| |||||||||| |||||| ||||| ||||||||||||||| || | ||||  |||||||||| |||||||||||||||| ||| ||||    
T  11168694 cttatctagtgcggtaacattttgggattggcttaggacacttggattttatcttaagaaatcagtttcatttgacttattcaaacatgtagtaaggatt 11168793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 606
Target Start/End: Original strand, 11207439 - 11207525
Alignment:
Q  520 ttatttagtgctgtaacattttaggattgacttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacat 606  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||| ||||| || | ||||  |||||||||  |||||||||||||    
T  11207439 ttatttagtgcggtaacattttgggattggcttagtacacttggagtttatcttaagaaatcagtttcatttaacttattcaaacat 11207525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 481
Target Start/End: Complemental strand, 4158356 - 4158286
Alignment:
Q  411 gctggtatcttgagatgtttagggtctaattattcaagtatatgatgtaatgttaattggcttgaataatt 481  Q
    |||||||||||||||| |||||| ||| |||||| ||||||||| | | |||||||||| |||||| ||||    
T  4158356 gctggtatcttgagatttttaggatctgattattgaagtatatggtctgatgttaattgacttgaagaatt 4158286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 669
Target Start/End: Original strand, 11207668 - 11207700
Alignment:
Q  637 aacccgtgcttcgcacgggtttataactagttt 669  Q
    |||||||||||||||||||||| ||||||||||    
T  11207668 aacccgtgcttcgcacgggtttgtaactagttt 11207700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 668
Target Start/End: Complemental strand, 3459 - 3423
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagtt 668  Q
    |||||||||||||||||||||||||||||||||||||    
T  3459 tattcaacccgtgcttcgcacgggtttataactagtt 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 52710 - 52793
Alignment:
Q  371 caatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatg 454  Q
    |||||||||||| |||| ||   |||| |||||||||||||  | ||||||||||| |||||||||| |||||| |||||||||    
T  52710 caatcgcggtgtggtagtattagcatacattaagacttttgtcgatatcttgagatttttagggtctgattattgaagtatatg 52793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 57823 - 57906
Alignment:
Q  371 caatcgcggtgtagtagaatctacatatattaagacttttgctggtatcttgagatgtttagggtctaattattcaagtatatg 454  Q
    |||||||||||| |||| ||   |||| |||||||||||||  | ||||||||||| |||||||||| |||||| |||||||||    
T  57823 caatcgcggtgtggtagtattagcatacattaagacttttgtcgatatcttgagatttttagggtctgattattgaagtatatg 57906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 668
Target Start/End: Complemental strand, 10819 - 10783
Alignment:
Q  632 tattcaacccgtgcttcgcacgggtttataactagtt 668  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10819 tattcaacccgtgcttcgcacgggtttgtaactagtt 10783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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