View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712-Insertion-3 (Length: 347)
Name: NF5712-Insertion-3
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 27809693 - 27809359
Alignment:
| Q |
8 |
acataaagagcctaatgtcatggtttgttttttgttataaaatataatgttctgagcacctacaacttgttagtttagtttatatttagtttattatttg |
107 |
Q |
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| T |
27809693 |
acataaagagcctaatgtcatggtttgttttttgttataaaatataatgttctgagcatctacaacttgttagtttagtttatatttagtttattatttg |
27809594 |
T |
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| Q |
108 |
ttaatatgaacaaattgctctgcattcctgcacatgcattgttactgaagcatgttaccctctgatccttttcatatgcaatgtatgacctgtcacttct |
207 |
Q |
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| T |
27809593 |
ttaatatgaacaaattgctctgcattcctgcacatgcattgttactgaagcatgttaccctctgatccttttcatatgcaatgtatgaccagtcacttct |
27809494 |
T |
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| Q |
208 |
gcctttgacttctatnnnnnnngtttgattaaaagaataatagcgttttctagttgaccaaataaaataaatgtgtctaacttgaatacatataa---ta |
304 |
Q |
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| T |
27809493 |
gcctttgacttctataaaaaaagtttgattaaaagaataatagcttttgctagttgaccaaataaaataaatgtgtctaacttaaatacatataatacta |
27809394 |
T |
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| Q |
305 |
caagataaaattacagactcctaatttatccaacc |
339 |
Q |
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| T |
27809393 |
caagataaaattacagactcttaatttatccaacc |
27809359 |
T |
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