View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712-Insertion-4 (Length: 228)
Name: NF5712-Insertion-4
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 27929524 - 27929304
Alignment:
| Q |
8 |
gtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtac |
107 |
Q |
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| T |
27929524 |
gtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtat |
27929425 |
T |
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| Q |
108 |
ctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagata |
207 |
Q |
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| T |
27929424 |
ctgtcaaggacattcaatcacaacattagtaaaaacacaatgaattggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagata |
27929325 |
T |
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| Q |
208 |
ggcgagaaataaattcaaaaa |
228 |
Q |
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| T |
27929324 |
ggcgagaaataaattcaaaaa |
27929304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 28082320 - 28082533
Alignment:
| Q |
15 |
agggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaa |
114 |
Q |
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| T |
28082320 |
agggttgaaatcaaatggaacttgagccacgaagagctctagataatgaagcaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaa |
28082419 |
T |
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| Q |
115 |
ggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgaga |
214 |
Q |
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| T |
28082420 |
ggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggcgaga |
28082519 |
T |
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| Q |
215 |
aataaattcaaaaa |
228 |
Q |
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| T |
28082520 |
aataaattcaaaaa |
28082533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 27935550 - 27935335
Alignment:
| Q |
13 |
aaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtc |
112 |
Q |
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| T |
27935550 |
aaagggttgaaatcagatggaatttcatctaggaagcgctctagataatgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtc |
27935451 |
T |
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| Q |
113 |
aaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgataactcaattaatcatcagccagagataggcga |
212 |
Q |
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| T |
27935450 |
aaggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagttgttcgatgataactcaactaatcatcagccagagataggaga |
27935351 |
T |
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| Q |
213 |
gaaataaattcaaaaa |
228 |
Q |
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| T |
27935350 |
ggaataaattcaaaaa |
27935335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 46163502 - 46163458
Alignment:
| Q |
69 |
aaagaggccacaatcaaatgagttttcctgctgtggtacctgtca |
113 |
Q |
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| T |
46163502 |
aaagaggccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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