View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_high_11 (Length: 251)
Name: NF5712_high_11
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 52179720 - 52179957
Alignment:
| Q |
10 |
aagaatattacacaatgtcacaaacacattcaatgctcgagtttacaaaggagaatcttaactattggctactagatcacccatcaattgtttcattccg |
109 |
Q |
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| T |
52179720 |
aagaaaattacacaatgtcacaaacatattcaatgctcgagtttacaaaggagaatcttaactattggctactagatcacccatcaattgtttcattccg |
52179819 |
T |
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| Q |
110 |
gtggagtcctgccctatcatggggagccacatggtggtttctcatctccgccatattcttttacatctccatcacggtaactatccacgtcatccttaaa |
209 |
Q |
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| T |
52179820 |
gtggagtcctgccctatcatggggagccacatggtggtttctcatctccgccatattcttttacatctccatcacggtaactatccacgtcatccttaaa |
52179919 |
T |
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| Q |
210 |
ctatgtcggagactgcgccctgtacctttaggtccatt |
247 |
Q |
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| T |
52179920 |
ctatgtcggagactgcgccctgtacctttaggtccatt |
52179957 |
T |
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