View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_high_8 (Length: 329)
Name: NF5712_high_8
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 3639597 - 3639283
Alignment:
| Q |
1 |
cttcaatagcttcagtttcaaaaccacattttgagagacctgagattagtgaagtccatgaaactacgtcgggtgaaggaattgatttgaaaacgcgcgt |
100 |
Q |
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| T |
3639597 |
cttcaatagcttcagtttcaaaaccacattttgagagacctgagattagtgaagtccatgaaactacgtcgggtgaaggaattgatttgaaaacgcgcgt |
3639498 |
T |
|
| Q |
101 |
tgctgaaacgacgtcgtttgaggagaggtaaaaatagagtaaagtgtttttgatgaagccatcgaagatgtgaccggatttgatgagacgcgcgtggatt |
200 |
Q |
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| T |
3639497 |
tgctgaaacgacgtcgtttgaggagaggtaaaaatagagtaaagtgtttttgatgaagccatcgaagatgtgaccggatttgatgagacgcgcgtggatt |
3639398 |
T |
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| Q |
201 |
tcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639397 |
tcaagacctttggcgtgcgcatgataggaacaacatgctttgagcgcgtgggtgaaggtgtagtgattgtgggaagaagaacaagagagcatttgattgc |
3639298 |
T |
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| Q |
301 |
agaggttgaagaaag |
315 |
Q |
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||||||||||||||| |
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| T |
3639297 |
agaggttgaagaaag |
3639283 |
T |
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