View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_1 (Length: 595)
Name: NF5712_low_1
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 3639663 - 3640246
Alignment:
| Q |
1 |
agcattggagcgattaactttggtaaagcgattcatgcttacgggttgaaatcgttgatgattgatgggaatattgttttttataatgctgcattggatt |
100 |
Q |
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| T |
3639663 |
agcattggagcgattaaatttggtaaagcgattcatgcttacgggttgaaatcgttgatgattgatgggaatattgttttttataatgctgcattggatt |
3639762 |
T |
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| Q |
101 |
tgtatgcaaaatgtgggttcttgagtaatgcacggaatgtgtttgtgaaaatgtctaaaagggatgttatttcttggactacattgttaatggcttatgc |
200 |
Q |
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| T |
3639763 |
tgtatgcaaaatgtgggttttttagtaatgcacggaatgtgtttgtgaaaatgtctaaaagggatgttatttcttggactacattgttaatggcttatgc |
3639862 |
T |
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| Q |
201 |
acgtggaggacaatgtggtgaggctgttgaggtttttaaacaaatggttgtaagtggagaagctgagccaaatgagtcgacggttgttaccgtgttatcg |
300 |
Q |
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| T |
3639863 |
acgtggaggacaatgtggtgaggctgttgaggtttttaaacaaatgattgtaagtggagaagctgagccaaatgagtcgacggttgttaccgtgttatcg |
3639962 |
T |
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| Q |
301 |
gcttgtgcttctatcgggtctttcagtttggggtgttgggtgcatgattatattgagaaaaggattgatcttgatgttgatggtaatattggaaatgcat |
400 |
Q |
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| T |
3639963 |
gcttgtgcttctatcgggtctttgagtttggggtgttgggtgcatgattatattgagaaaaggattgatcttgatgttgatggtaatattggaaatgcat |
3640062 |
T |
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| Q |
401 |
tggttaacatgtatgttaagtgtggtgatatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttg |
500 |
Q |
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| T |
3640063 |
tggttaacatgtatgttaagtgtggtgatatgaaaatggggttgaaggtttttaacatggttgttcataaagatgttatttcttggggtactgttatttg |
3640162 |
T |
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| Q |
501 |
tggattggctatgaatgggtatggtaaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgt |
584 |
Q |
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| T |
3640163 |
tggattggctatgaatgggtatggtaaacaagttgtgcagatgttttcacatatgctggttcatggggttttacctgatgatgt |
3640246 |
T |
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