View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_12 (Length: 250)
Name: NF5712_low_12
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 250
Target Start/End: Complemental strand, 38372653 - 38372428
Alignment:
| Q |
25 |
tagctagaacatagtattcggtcattaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtattcttgcatggaatgagatc |
124 |
Q |
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| T |
38372653 |
tagctagaacatagtattcggtcattaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtattcttgcatggaatgagatc |
38372554 |
T |
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| Q |
125 |
gtgtatttgttgattcattcattttgtagaggcattctctgttggaggaggaactagtactacttattcaaagcttggggagaatacatggtctattctt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38372553 |
gtgtatttgttgattcattcattttgtagaggcattctctgttggaggaggaactagtactacttattcaaagcttggggagaattcatggtctattctt |
38372454 |
T |
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| Q |
225 |
ttatgtaataaatttcctttcctgcc |
250 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
38372453 |
ttatgtcataaatttcctttcctgcc |
38372428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 38377770 - 38377712
Alignment:
| Q |
48 |
attaatgtttgaagatctttgaatttggtaacttgtcacttctattacactgatgtatt |
106 |
Q |
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|||||||| ||||||||| || |||||||||| |||||| ||||| |||||||||||| |
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| T |
38377770 |
attaatgtctgaagatctatgtatttggtaaccagtcactgctattgcactgatgtatt |
38377712 |
T |
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