View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_15 (Length: 217)
Name: NF5712_low_15
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 31025379 - 31025560
Alignment:
| Q |
19 |
atacacctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattgaaatattagttaaaattctaatattaaacgatatt |
118 |
Q |
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| T |
31025379 |
atactcctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattcaaatattagttaaaattctaatattaaacgatatt |
31025478 |
T |
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| Q |
119 |
tattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagt |
200 |
Q |
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| T |
31025479 |
tattagtatatcaaatgcaacattgctacgaggaatatgtgaacaaactcatatcgctaaaaattgattgaaagtttttagt |
31025560 |
T |
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Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 33533813 - 33533904
Alignment:
| Q |
109 |
aaacgatatttattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
33533813 |
aaacgatatttattagtatatcaaatgcaacatttttatgatgaatatgtgtacaaactcatatcgttaaaatttgattgaatgcttttagt |
33533904 |
T |
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