View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5712_low_3 (Length: 462)

Name: NF5712_low_3
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5712_low_3
NF5712_low_3
[»] chr2 (4 HSPs)
chr2 (155-328)||(45401340-45401513)
chr2 (356-406)||(45401539-45401589)
chr2 (93-154)||(45332758-45332821)
chr2 (85-154)||(44324173-44324244)
[»] chr6 (7 HSPs)
chr6 (155-328)||(7599251-7599424)
chr6 (399-451)||(7599504-7599556)
chr6 (94-154)||(28040797-28040859)
chr6 (85-154)||(22014065-22014136)
chr6 (93-154)||(25478293-25478356)
chr6 (93-154)||(27527338-27527401)
chr6 (372-410)||(7599457-7599495)
[»] chr4 (6 HSPs)
chr4 (155-328)||(28463098-28463271)
chr4 (18-156)||(8164406-8164544)
chr4 (399-451)||(28462966-28463018)
chr4 (93-154)||(27561172-27561235)
chr4 (93-154)||(4763526-4763589)
chr4 (372-410)||(28463027-28463065)
[»] chr5 (6 HSPs)
chr5 (153-331)||(3533762-3533941)
chr5 (155-233)||(19610522-19610600)
chr5 (399-451)||(19610746-19610798)
chr5 (358-451)||(3533964-3534060)
chr5 (356-406)||(19610683-19610733)
chr5 (85-154)||(5519500-5519571)
[»] scaffold0014 (1 HSPs)
scaffold0014 (155-262)||(89805-89913)
[»] chr1 (6 HSPs)
chr1 (85-154)||(29289106-29289177)
chr1 (93-154)||(47050549-47050612)
chr1 (93-154)||(14660161-14660224)
chr1 (93-154)||(16100841-16100904)
chr1 (93-154)||(14650370-14650433)
chr1 (85-154)||(17653422-17653493)
[»] chr3 (5 HSPs)
chr3 (93-154)||(19435103-19435166)
chr3 (356-407)||(23361152-23361203)
chr3 (93-154)||(28103912-28103975)
chr3 (93-154)||(6911362-6911425)
chr3 (299-328)||(23361097-23361126)
[»] chr7 (2 HSPs)
chr7 (91-156)||(29467032-29467097)
chr7 (157-221)||(17712889-17712953)
[»] scaffold0406 (1 HSPs)
scaffold0406 (93-154)||(3747-3810)
[»] chr8 (2 HSPs)
chr8 (93-154)||(18982516-18982579)
chr8 (85-141)||(26917366-26917422)


Alignment Details
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 155 - 328
Target Start/End: Original strand, 45401340 - 45401513
Alignment:
Q  155 cactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttcagttttaagagcacccataaaa 254  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45401340 cactactgcacatatgacattttgcaacatttttggggtgacaattttaaaaaagtgttacacacataatttattttcagttttaagagcacccataaaa 45401439  T
Q  255 taaaatgttactctatatttctgtttgaacaaatnnnnnnngggaaatgttaccaacacttcagtgataactca 328  Q
    |||||||||||||||||||||| |||||||||||       || ||||||||||||||||||||||||||||||    
T  45401440 taaaatgttactctatatttctttttgaacaaataaaacaaggtaaatgttaccaacacttcagtgataactca 45401513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 45401539 - 45401589
Alignment:
Q  356 accaaaaatctcacccatcaaaatgaatcgacgacaacaatcaatcaccac 406  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  45401539 accaaaaatctcaccgatcaaaatgaatcgacgacaacaatcaatcgccac 45401589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 45332821 - 45332758
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  45332821 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 45332758  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 44324244 - 44324173
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||||||||||| |||  ||||||| ||||||    
T  44324244 taaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatc 44324173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 155 - 328
Target Start/End: Original strand, 7599251 - 7599424
Alignment:
Q  155 cactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttcagttttaagagcacccataaaa 254  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  7599251 cactactgcacatatgacattttgcaacatttttgtggtgacaattttaaaaaagtgttacacacataatttattttcagttttaagagcacccatcaaa 7599350  T
Q  255 taaaatgttactctatatttctgtttgaacaaatnnnnnnngggaaatgttaccaacacttcagtgataactca 328  Q
    |||||||||||||||||||||| |||||||||||       || ||||||||||||||||||||||||||||||    
T  7599351 taaaatgttactctatatttctttttgaacaaataaaaaaaggtaaatgttaccaacacttcagtgataactca 7599424  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 7599504 - 7599556
Alignment:
Q  399 atcaccaccgtcacacatcatcgtcgtcacgcctctcagaattcagttttctt 451  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  7599504 atcaccaccgtcactcatcatcgtcgccacgcctctcagaattcagttttctt 7599556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 28040859 - 28040797
Alignment:
Q  94 aaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    |||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  28040859 aaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 28040797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 22014136 - 22014065
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||||||||||| |||  ||||||| ||||||    
T  22014136 taaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatc 22014065  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 25478293 - 25478356
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  || |||||||||||    
T  25478293 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaacttcgtaattttatc 25478356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 27527401 - 27527338
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||| ||||||||||    
T  27527401 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatc 27527338  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 7599457 - 7599495
Alignment:
Q  372 atcaaaatgaatcgacgacaacaatcaatcaccaccgtc 410  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  7599457 atcaaaatgaatcgacaacaacaatcaatcgccaccgtc 7599495  T

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Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 155 - 328
Target Start/End: Complemental strand, 28463271 - 28463098
Alignment:
Q  155 cactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttcagttttaagagcacccataaaa 254  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  28463271 cactactgcacatatgacattttgcaacatttttgtggtgacaattttaaaaaagtgttacacacataatttattttcagttttaagagcacccatcaaa 28463172  T
Q  255 taaaatgttactctatatttctgtttgaacaaatnnnnnnngggaaatgttaccaacacttcagtgataactca 328  Q
    |||||||||||||||||||||| |||||||||||       || ||||||||||||||||||||||||||||||    
T  28463171 taaaatgttactctatatttctttttgaacaaataaaaaaaggtaaatgttaccaacacttcagtgataactca 28463098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 8164406 - 8164544
Alignment:
Q  18 agtactatattattataactaaaattacaacgactaattgttaattaaaccttaaatctatttctattaaccgtgtaaaaatataataaatttacaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8164406 agtactatattattataactaaaattacaacgactaattgataattaaaccttaaatctatttctattaaccgtataaaaatataataaatttacaatca 8164505  T
Q  118 agtgtatcatgaaaattcacaaatttgtaattttatcca 156  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  8164506 agtgtaccatgaaaattcacaaatttgtaattttatcca 8164544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 28463018 - 28462966
Alignment:
Q  399 atcaccaccgtcacacatcatcgtcgtcacgcctctcagaattcagttttctt 451  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28463018 atcaccaccgtcactcatcatcgtcgccacgcctctcagaattcagttttctt 28462966  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 27561172 - 27561235
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  27561172 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 27561235  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 4763526 - 4763589
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    |||||||||||||||||  |||||||||||| |||||||||||| |||  || |||||||||||    
T  4763526 taaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatc 4763589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 410
Target Start/End: Complemental strand, 28463065 - 28463027
Alignment:
Q  372 atcaaaatgaatcgacgacaacaatcaatcaccaccgtc 410  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  28463065 atcaaaatgaatcgacaacaacaatcaatcgccaccgtc 28463027  T

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Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 153 - 331
Target Start/End: Original strand, 3533762 - 3533941
Alignment:
Q  153 tccactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttcagttttaagagcacccataa 252  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3533762 tccactactgcacatatgaaattttgcaacatttttgcggtgacaattttaaaaaagtgttacacacataatttattttcagttttaagagcacccataa 3533861  T
Q  253 aataaaatgttactctatatttctgtttgaacaaatnnnnnnngggaaatgttaccaacacttcagt-gataactcataa 331  Q
    |||||||||||||||||||||||| ||| |||||||       || ||||||||||||||||||||| ||||||||||||    
T  3533862 aataaaatgttactctatatttcttttttaacaaataaaaaaaggaaaatgttaccaacacttcagtggataactcataa 3533941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 19610522 - 19610600
Alignment:
Q  155 cactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttca 233  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  19610522 cactactgcacatatgacattttgcaacatttttgcggtgataattttaaaaaagtgttacacacataatttattttca 19610600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 399 - 451
Target Start/End: Original strand, 19610746 - 19610798
Alignment:
Q  399 atcaccaccgtcacacatcatcgtcgtcacgcctctcagaattcagttttctt 451  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19610746 atcaccaccgtcacgcatcatcgtcgtcacgcctctcagaattcagttttctt 19610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 3533964 - 3534060
Alignment:
Q  358 caaaaatctcacccatcaaaatgaatcgacgacaacaatcaatcaccaccgtc----acacatcatcgtcgtcacgcctctcagaattcagttttctt 451  Q
    ||||||||||||| ||||||||||||| || ||||||||||||||||||||||     ||||||| |  ||||||| |||||||| ||||||||||||    
T  3533964 caaaaatctcaccgatcaaaatgaatcaac-acaacaatcaatcaccaccgtcgccgccacatcaccaccgtcacgtctctcagagttcagttttctt 3534060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 19610683 - 19610733
Alignment:
Q  356 accaaaaatctcacccatcaaaatgaatcgacgacaacaatcaatcaccac 406  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||    
T  19610683 accaaaaatctcaccgatcaaaatgaatcgatgacaacaatcaatcgccac 19610733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 5519500 - 5519571
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||| ||||||||||||||| | ||||||||||||| |||||||||||| |||  ||||||| ||||||    
T  5519500 taaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatc 5519571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 89805 - 89913
Alignment:
Q  155 cactactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacataatttattttcag-ttttaagagcacccataaa 253  Q
    ||||| |||||| ||||||||||| ||||||||| |||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  89805 cactattgcacatatgacattttgtaacatttttacggtgaaaattttaaaaaagtgttacacaaataatttattttcagtttttaagagcacccataaa 89904  T
Q  254 ataaaatgt 262  Q
    |||||||||    
T  89905 ataaaatgt 89913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 29289106 - 29289177
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  29289106 taaccgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 29289177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 47050549 - 47050612
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  47050549 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 47050612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 14660224 - 14660161
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||| ||||||||||    
T  14660224 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaattttatc 14660161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 16100904 - 16100841
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||| |||  ||||||||||||||    
T  16100904 taaaaatataataaattcacaatcaagtgtaccatgagaattcataaaactttgtaattttatc 16100841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 14650433 - 14650370
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||| |||  ||| ||||||||||    
T  14650433 taaaaatataataaattcacaatcaagtgtaccatgataattcataaaactttttaattttatc 14650370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 17653422 - 17653493
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||| ||||||||||||||  | ||||||||||||| |||||||||||| |||  ||||||| ||||||    
T  17653422 taaccgtataaaaatataataacctcacaatcaagtgtaccatgaaaattcataaaactttgtaaatttatc 17653493  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 19435166 - 19435103
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||||||||||||||    
T  19435166 taaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttgtaattttatc 19435103  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 23361152 - 23361203
Alignment:
Q  356 accaaaaatctcacccatcaaaatgaatcgacgacaacaatcaatcaccacc 407  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  23361152 accaaaaatctcaccgatcaaaatgaatcgacgacaacgatcaatcgccacc 23361203  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 28103975 - 28103912
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| || |||||||||| |||||||||||| |||  ||||||||||||||    
T  28103975 taaaaatataataaattcaccatcaagtgtaccatgaaaattcataaaactttgtaattttatc 28103912  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 6911362 - 6911425
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    |||||||||||||||||  |||||||||||| |||||||||||| |||  || |||||||||||    
T  6911362 taaaaatataataaattcgcaatcaagtgtaccatgaaaattcataaaacttggtaattttatc 6911425  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 328
Target Start/End: Original strand, 23361097 - 23361126
Alignment:
Q  299 aaatgttaccaacacttcagtgataactca 328  Q
    ||||||||||||||||||||||||||||||    
T  23361097 aaatgttaccaacacttcagtgataactca 23361126  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 29467032 - 29467097
Alignment:
Q  91 tgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaatttgtaattttatcca 156  Q
    ||||||||| ||||||||  ||||||||||||| |||| ||||||| |||||| ||| ||||||||    
T  29467032 tgtaaaaatttaataaatcaacaatcaagtgtaccatggaaattcataaatttataaatttatcca 29467097  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 17712953 - 17712889
Alignment:
Q  157 ctactgcacaaatgacattttgcaacatttttgcggtgacaattttaaaaaagtgttgcacacat 221  Q
    |||||||||| ||||||||||| |||||||||  ||||||||||  | ||||||||| |||||||    
T  17712953 ctactgcacacatgacattttgtaacatttttttggtgacaattgaacaaaagtgttacacacat 17712889  T

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Target: scaffold0406 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 3810 - 3747
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    ||||||||||||||||| |||||||| |||| |||||||||||| |||  || |||||||||||    
T  3810 taaaaatataataaattcacaatcaaatgtaccatgaaaattcataaaacttcgtaattttatc 3747  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 18982579 - 18982516
Alignment:
Q  93 taaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaa--tttgtaattttatc 154  Q
    |||||||||||||| || ||||||||||||| |||| ||||||| |||  ||||||||||||||    
T  18982579 taaaaatataataagttcacaatcaagtgtaccatggaaattcataaaactttgtaattttatc 18982516  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 26917366 - 26917422
Alignment:
Q  85 taaccgtgtaaaaatataataaatttacaatcaagtgtatcatgaaaattcacaaat 141  Q
    ||||||||||||||||||||||| | |||| |||||||| | |||||||||| ||||    
T  26917366 taaccgtgtaaaaatataataaactcacaaacaagtgtaccgtgaaaattcagaaat 26917422  T

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