View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_4 (Length: 417)
Name: NF5712_low_4
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Original strand, 1024091 - 1024508
Alignment:
| Q |
15 |
cataggacagtgtgtttgatattcatttaaaggcaatcaaagcatataggtacacattcaattgcaattcgtactttgattgggccaccaaaattttgaa |
114 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1024091 |
cataggacagtgtgtttgatattcaattcaaggcaatcaaagcatataggtacacattcaattgctattcgtactttgattgggccaccaaaattttgaa |
1024190 |
T |
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| Q |
115 |
atactatttgagaaaataagaagtatggagtcttctgccgattcagactccgtgttggtcttatgtgtcacttattctatgaattcaatga--------- |
205 |
Q |
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| T |
1024191 |
atactatttgagaaaataagaagtatggagtcttctgccaattcagactccgtgttggtcttatgtgtcacttattctatgaattcaatgaaacatttga |
1024290 |
T |
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| Q |
206 |
---ttaattatcaatggaatgtgctgcttcctgtattgccataatatagtagaatcaagttgtggcttgcatgtattaaaattcttattact---aacta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1024291 |
gagttaattatcaatggaatgtgctgcttcctgtattgccataatatagtagaatcaagttgtggcttgcatgtattaaaattcttattactcctaacta |
1024390 |
T |
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| Q |
300 |
tgtgtgcaagagtaatctagattctagatagttgtaagttagtacaccttaagttattttttgttccctaggtgtggtggatatttggaatcacggtgac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1024391 |
tgtgtgcaagagtaatctagattctagatagttgtaagttagtacaccttaagttattttttgttccctaggtgtggtggatatttggaatcacggtgac |
1024490 |
T |
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| Q |
400 |
actgtgattttgttaaag |
417 |
Q |
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| T |
1024491 |
actgtgattttgttaaag |
1024508 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 416
Target Start/End: Original strand, 28496627 - 28496655
Alignment:
| Q |
388 |
aatcacggtgacactgtgattttgttaaa |
416 |
Q |
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| T |
28496627 |
aatcacggtgacactgtgattttgttaaa |
28496655 |
T |
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