View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_6 (Length: 371)
Name: NF5712_low_6
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 53823939 - 53823635
Alignment:
| Q |
17 |
aaaaaggatgaaaataaatgagaacacatgcgttgttgatgtcttaaagaagacgatagagtcnnnnnnntaggcaaatatgaatgaaatgaatgtgaag |
116 |
Q |
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| T |
53823939 |
aaaaaggatgtaaataaatgagaacacatgcgttgttgttgtcttaaagaagacgatagagtcaaaaaaataggcaaatatgaatgaaatgaatgtgaag |
53823840 |
T |
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| Q |
117 |
tatacacaaagcattacttgtcttgttttggtcacttgcacttttggttgtccaactggacaaaaactacaacgaattcattaatggccttacgtagcgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
53823839 |
tatacacaaagcattacttgtcttgttttggtcacttgcacttttggtagtccaacttgacaaaaactacaactaattcattaatggccttgcgtagcgt |
53823740 |
T |
|
| Q |
217 |
tgaaaacatgcttcagttagaggctgctatggttccaaaaaccggcttactaatttcttttacgcgttcattatgaaaaaagattgtgactatattaatc |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53823739 |
tgaaaacatgcgtcagttagaggctgctatggttccaaaaaccggcttactaatttcttttacgcgttcattatga-aaaagattgtgactatattaatc |
53823641 |
T |
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| Q |
317 |
tagaag |
322 |
Q |
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|||||| |
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| T |
53823640 |
tagaag |
53823635 |
T |
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