View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_7 (Length: 329)
Name: NF5712_low_7
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 43 - 310
Target Start/End: Original strand, 6411635 - 6411903
Alignment:
| Q |
43 |
taagctcaatatcaatatataataggctatgggcttaaatttgaacagcacgattcagtgaactgatcaaaataatttgccgaagtctgtaattttttaa |
142 |
Q |
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| T |
6411635 |
taagctcaatatcaatatataataggctatgggcttaaatttgaacagcacgattcagtgaactgatcaaaataatttgccgaagtctgtaattttttaa |
6411734 |
T |
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| Q |
143 |
gatgggtggcaaataagaaacaagaagtatgtaaaactggatattttaaacctggttttgtacatattcgtaggttacaaaaaccagttactaagttcac |
242 |
Q |
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| T |
6411735 |
gatgggtggcaaataagaaacaagaagtatgtaaaactggatattttaaacctggttttgtacatattcgtaggttacaaaaaccagttactaagttcac |
6411834 |
T |
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| Q |
243 |
accaggttttgg-nnnnnnnntagtttttaaactgattcctaaaaccacctgattttataaggggtttg |
310 |
Q |
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| T |
6411835 |
accaggctttggaaaaaaaaatagtttttaaactgattcctaaaaccacctgattttataaggagtttg |
6411903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 6408968 - 6409094
Alignment:
| Q |
134 |
attttttaagatgggtggcaaataagaaacaagaagtatg------taaaactggatattttaaacctggttttgtacatattcgtaggttacaaaaacc |
227 |
Q |
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| T |
6408968 |
atttgttaagatgaatggcgaataagaaacaagaagtttgcagtgttaaaacttgaaattttaaacctggttttgtacaaattagtagtttacaacaatc |
6409067 |
T |
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| Q |
228 |
agttactaagttcacaccaggttttgg |
254 |
Q |
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| T |
6409068 |
aattactaagttcacaccaggttttgg |
6409094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 6408489 - 6408529
Alignment:
| Q |
50 |
aatatcaatatataataggctatgggcttaaatttgaacag |
90 |
Q |
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| T |
6408489 |
aatatcgatatataataggctatgggcttaaattggaacag |
6408529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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