View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5712_low_9 (Length: 291)
Name: NF5712_low_9
Description: NF5712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5712_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 52180000 - 52180259
Alignment:
| Q |
13 |
aatatttttcggcatgtttttctctgctgaagctgaggttcgggacactcgttggctttggaaacgaacccgaaccacaccattcgaatggttactatgt |
112 |
Q |
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| T |
52180000 |
aatatttttcggcatgtttttctctgctgaagctgaggttcgggacactcgttggctttggaaacgaacccgaaccacaccattcgaatggttactatgt |
52180099 |
T |
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| Q |
113 |
ttcccattgggcattcgtccatcgggtcgtgttttcttttggtcttatgctttttatctctctcgttatcttcacatgattaggacaattttcattgttt |
212 |
Q |
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| T |
52180100 |
ttcccattgggcattcgtccatcgggtcgtgttttcttttggtcatatgctttttatctctctcgttatcttcacatgattaggacaattttcattgttt |
52180199 |
T |
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| Q |
213 |
tgaccgaaagaaaattgtcgttttttagattatttaacaactcgattattctcataatgt |
272 |
Q |
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| T |
52180200 |
tgaccgaaagaaaattgtcgttttttagattatttaacaactcgattattctcataatgt |
52180259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 6665178 - 6665252
Alignment:
| Q |
85 |
aaccacaccattcgaatggttactatgtttcccattgggcattcgtccatcgggtcgtgttttcttttggtctta |
159 |
Q |
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| T |
6665178 |
aaccaccccttttgaatggttcctttgtttcccacttggtatgcgtccatctggtcgtgttttcttctggtctta |
6665252 |
T |
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