View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713-Insertion-10 (Length: 237)
Name: NF5713-Insertion-10
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713-Insertion-10 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 35742409 - 35742181
Alignment:
| Q |
9 |
tgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagcaa |
108 |
Q |
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| T |
35742409 |
tgtaaagaatttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagcaa |
35742310 |
T |
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| Q |
109 |
ataatctgattgatcttacactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcacg |
208 |
Q |
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| T |
35742309 |
ataatctgattgatcttgcactcaaagctactgagagctgcacatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcacg |
35742210 |
T |
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| Q |
209 |
acgcggtatttacaaggttagaaaacatc |
237 |
Q |
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| T |
35742209 |
acgcggtatttacaaggttagaaaacatc |
35742181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 35748768 - 35748547
Alignment:
| Q |
18 |
tttgaatattttgattttgctcctcctactcttgaagtcttattgatagaatttaatccaaagatgaagtcaatttgtctcaagaaagcaaataatctga |
117 |
Q |
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| T |
35748768 |
tttgaatattttgatatttctgttactactctcaaagtcttattgctacaatttcatcaagagatgaagtcaatttgtctcaagaaagcaattaatttga |
35748669 |
T |
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| Q |
118 |
ttgatcttacactcaaagctactgagagctgc----acatttggtttgatcaaaagtttgccaaaaaacattcaaaggctttctattagttcacgacgcg |
213 |
Q |
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| T |
35748668 |
ttgatcttacactcaaagctactaatggatgcgtatgtatttggtttgatcaaaagtttaccaaaaaacattcaaaggctttctattggtccatgactcg |
35748569 |
T |
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| Q |
214 |
gtatttacaaggttagaaaaca |
235 |
Q |
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| T |
35748568 |
gtgtttacaaggttagaaaaca |
35748547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 35737619 - 35737573
Alignment:
| Q |
82 |
tgaagtcaatttgtctcaagaaagcaaataatctgattgatcttaca |
128 |
Q |
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| T |
35737619 |
tgaagtcaatttgtctcaaaaaagcacacaatcttattgatcttaca |
35737573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 3148 - 3104
Alignment:
| Q |
81 |
atgaagtcaatttgtctcaagaaagcaaataatctgattgatctt |
125 |
Q |
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| T |
3148 |
atgaagtcaatttgtctcaagaaagcaaagaatctgactgatctt |
3104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 10862894 - 10862933
Alignment:
| Q |
87 |
tcaatttgtctcaagaaagcaaataatctgattgatctta |
126 |
Q |
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| T |
10862894 |
tcaatttgtctcaagaatgcaaagaatctgattgatctta |
10862933 |
T |
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