View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5713-Insertion-2 (Length: 839)

Name: NF5713-Insertion-2
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5713-Insertion-2
NF5713-Insertion-2
[»] chr1 (32 HSPs)
chr1 (10-280)||(47459399-47459668)
chr1 (362-573)||(47459107-47459317)
chr1 (694-839)||(47457713-47457858)
chr1 (26-134)||(22346756-22346865)
chr1 (44-148)||(5453942-5454047)
chr1 (434-573)||(19563357-19563497)
chr1 (44-134)||(28493486-28493577)
chr1 (432-573)||(43824194-43824339)
chr1 (8-154)||(34644407-34644554)
chr1 (49-134)||(19035340-19035426)
chr1 (15-134)||(868529-868647)
chr1 (58-134)||(31737491-31737568)
chr1 (15-134)||(24177637-24177757)
chr1 (450-573)||(36384310-36384434)
chr1 (7-146)||(48841200-48841340)
chr1 (15-134)||(21472864-21472984)
chr1 (15-134)||(28041253-28041373)
chr1 (653-697)||(47458982-47459026)
chr1 (26-122)||(4611062-4611159)
chr1 (19-102)||(2764372-2764456)
chr1 (44-134)||(1114023-1114114)
chr1 (44-134)||(30688418-30688509)
chr1 (656-695)||(37028789-37028828)
chr1 (520-573)||(41677820-41677874)
chr1 (37-134)||(45835334-45835431)
chr1 (44-84)||(2898614-2898654)
chr1 (61-134)||(7213104-7213178)
chr1 (62-126)||(18802924-18802988)
chr1 (41-129)||(20259949-20260038)
chr1 (432-493)||(37028555-37028616)
chr1 (97-134)||(25376040-25376077)
chr1 (664-697)||(43824218-43824251)
[»] chr3 (28 HSPs)
chr3 (9-151)||(26772602-26772745)
chr3 (15-134)||(39583355-39583475)
chr3 (7-149)||(38670998-38671141)
chr3 (26-134)||(32546656-32546765)
chr3 (431-573)||(35637209-35637354)
chr3 (8-135)||(44198627-44198755)
chr3 (431-573)||(3984431-3984575)
chr3 (430-573)||(2663222-2663367)
chr3 (458-570)||(49323171-49323285)
chr3 (15-134)||(53785570-53785690)
chr3 (46-134)||(44694-44783)
chr3 (15-129)||(37133125-37133240)
chr3 (25-83)||(32691002-32691060)
chr3 (44-135)||(49017827-49017919)
chr3 (60-134)||(8592002-8592077)
chr3 (44-91)||(26276520-26276567)
chr3 (31-128)||(3376880-3376978)
chr3 (654-696)||(35637085-35637127)
chr3 (47-135)||(2601689-2601778)
chr3 (15-103)||(26856888-26856977)
chr3 (15-91)||(26393812-26393888)
chr3 (44-134)||(46940928-46941019)
chr3 (653-695)||(3984657-3984699)
chr3 (44-90)||(5338552-5338598)
chr3 (92-134)||(25324891-25324933)
chr3 (431-493)||(28212599-28212661)
chr3 (26-91)||(13582415-13582480)
chr3 (61-141)||(50657231-50657312)
[»] chr7 (26 HSPs)
chr7 (15-134)||(21326964-21327084)
chr7 (8-148)||(28517406-28517547)
chr7 (7-136)||(45003015-45003145)
chr7 (8-140)||(5825128-5825261)
chr7 (8-133)||(40726599-40726725)
chr7 (62-147)||(38766172-38766258)
chr7 (26-122)||(982822-982919)
chr7 (431-573)||(24879071-24879216)
chr7 (29-122)||(45613982-45614076)
chr7 (73-147)||(38832150-38832225)
chr7 (15-134)||(25187057-25187177)
chr7 (17-91)||(27027758-27027832)
chr7 (458-554)||(48065011-48065109)
chr7 (30-134)||(2904242-2904346)
chr7 (73-149)||(36931887-36931963)
chr7 (26-134)||(45974736-45974845)
chr7 (26-82)||(27521385-27521441)
chr7 (15-99)||(30216184-30216268)
chr7 (15-83)||(48539094-48539162)
chr7 (15-122)||(19277164-19277274)
chr7 (8-84)||(23037457-23037533)
chr7 (15-102)||(24527482-24527570)
chr7 (15-91)||(41117896-41117972)
chr7 (91-134)||(2520924-2520967)
chr7 (44-85)||(32336318-32336359)
chr7 (431-484)||(48064843-48064896)
[»] chr6 (14 HSPs)
chr6 (9-148)||(17249425-17249565)
chr6 (44-149)||(7749327-7749433)
chr6 (8-149)||(33220830-33220972)
chr6 (15-129)||(3137373-3137488)
chr6 (15-138)||(357842-357966)
chr6 (62-129)||(28009160-28009228)
chr6 (19-134)||(28543258-28543374)
chr6 (26-122)||(32115591-32115688)
chr6 (7-91)||(34304401-34304485)
chr6 (37-135)||(28625791-28625890)
chr6 (44-134)||(34168782-34168872)
chr6 (15-84)||(959493-959562)
chr6 (93-149)||(32531053-32531109)
chr6 (62-122)||(749501-749562)
[»] chr4 (28 HSPs)
chr4 (8-149)||(50001045-50001187)
chr4 (8-149)||(3329842-3329984)
chr4 (8-151)||(53619430-53619574)
chr4 (31-134)||(30940874-30940978)
chr4 (8-150)||(23255558-23255701)
chr4 (25-140)||(55933596-55933712)
chr4 (458-569)||(50470028-50470142)
chr4 (9-132)||(39001260-39001384)
chr4 (9-145)||(48657035-48657170)
chr4 (8-137)||(4419122-4419251)
chr4 (57-134)||(40392722-40392800)
chr4 (48-133)||(12053329-12053415)
chr4 (58-134)||(23604951-23605028)
chr4 (28-136)||(31846962-31847071)
chr4 (74-140)||(41372253-41372320)
chr4 (44-122)||(53170386-53170464)
chr4 (45-134)||(26521350-26521440)
chr4 (61-149)||(12917895-12917984)
chr4 (431-573)||(31799267-31799412)
chr4 (44-120)||(50464451-50464528)
chr4 (37-135)||(47585156-47585255)
chr4 (26-134)||(600829-600938)
chr4 (653-696)||(31799143-31799186)
chr4 (61-134)||(6865990-6866064)
chr4 (19-84)||(50442609-50442674)
chr4 (15-134)||(16955321-16955441)
chr4 (19-82)||(34107826-34107889)
chr4 (519-573)||(42171224-42171278)
[»] chr5 (28 HSPs)
chr5 (8-152)||(27336538-27336683)
chr5 (8-146)||(430451-430590)
chr5 (431-573)||(43146337-43146481)
chr5 (431-573)||(29668508-29668651)
chr5 (19-140)||(35310303-35310425)
chr5 (429-554)||(38088988-38089114)
chr5 (15-137)||(32269923-32270045)
chr5 (67-146)||(2917539-2917619)
chr5 (8-139)||(13167029-13167161)
chr5 (8-146)||(25663151-25663290)
chr5 (428-573)||(20256893-20257041)
chr5 (67-140)||(33692230-33692304)
chr5 (431-573)||(2134742-2134887)
chr5 (15-103)||(2566221-2566310)
chr5 (26-130)||(23023460-23023565)
chr5 (519-573)||(24147136-24147191)
chr5 (58-120)||(23092694-23092757)
chr5 (37-91)||(37873786-37873840)
chr5 (29-82)||(15292165-15292218)
chr5 (8-116)||(15506734-15506843)
chr5 (26-134)||(42921559-42921667)
chr5 (653-696)||(24147272-24147315)
chr5 (653-696)||(29668384-29668427)
chr5 (653-696)||(38088856-38088899)
chr5 (653-696)||(43146212-43146255)
chr5 (11-73)||(15809972-15810034)
chr5 (11-89)||(26212705-26212783)
chr5 (62-134)||(35455835-35455908)
[»] chr8 (31 HSPs)
chr8 (431-573)||(29525858-29526004)
chr8 (15-134)||(22589462-22589582)
chr8 (44-151)||(39434513-39434619)
chr8 (430-570)||(30233796-30233938)
chr8 (15-130)||(38815159-38815275)
chr8 (49-134)||(18596759-18596845)
chr8 (430-554)||(35162985-35163111)
chr8 (431-573)||(41774932-41775078)
chr8 (58-134)||(18804474-18804551)
chr8 (450-573)||(9305223-9305348)
chr8 (44-134)||(24320198-24320289)
chr8 (519-573)||(36676334-36676389)
chr8 (8-149)||(42659073-42659215)
chr8 (8-88)||(3187878-3187958)
chr8 (67-140)||(44337195-44337268)
chr8 (26-124)||(8882215-8882314)
chr8 (431-510)||(36675639-36675718)
chr8 (520-573)||(27768883-27768937)
chr8 (44-126)||(25021969-25022052)
chr8 (26-84)||(5329739-5329797)
chr8 (89-134)||(1187393-1187438)
chr8 (19-103)||(37514113-37514198)
chr8 (75-134)||(12751032-12751092)
chr8 (15-122)||(24450995-24451101)
chr8 (653-696)||(29525734-29525777)
chr8 (653-696)||(35163218-35163261)
chr8 (45-122)||(40223555-40223633)
chr8 (91-140)||(13232055-13232103)
chr8 (56-116)||(26033679-26033740)
chr8 (653-690)||(27768765-27768802)
chr8 (655-696)||(30233670-30233711)
[»] chr2 (26 HSPs)
chr2 (8-137)||(27494169-27494299)
chr2 (26-134)||(4413203-4413312)
chr2 (431-573)||(18058769-18058914)
chr2 (25-149)||(28224846-28224971)
chr2 (431-569)||(39822891-39823031)
chr2 (44-134)||(15515302-15515393)
chr2 (26-134)||(17344499-17344608)
chr2 (15-122)||(9685541-9685649)
chr2 (67-122)||(20143123-20143179)
chr2 (431-568)||(5737193-5737332)
chr2 (58-134)||(3208413-3208490)
chr2 (26-134)||(13413212-13413321)
chr2 (58-134)||(30602350-30602427)
chr2 (31-134)||(18745096-18745200)
chr2 (59-134)||(41702133-41702209)
chr2 (653-696)||(18058989-18059032)
chr2 (58-152)||(34250156-34250251)
chr2 (653-695)||(39822764-39822806)
chr2 (78-134)||(10587144-10587201)
chr2 (8-89)||(27502269-27502350)
chr2 (434-511)||(25628873-25628950)
chr2 (26-134)||(41868045-41868153)
chr2 (58-134)||(42122678-42122755)
chr2 (91-134)||(2626050-2626093)
chr2 (93-151)||(38723997-38724055)
chr2 (663-696)||(39822972-39823005)
[»] scaffold0309 (1 HSPs)
scaffold0309 (43-134)||(5185-5277)
[»] scaffold0009 (1 HSPs)
scaffold0009 (27-134)||(102967-103075)
[»] scaffold0406 (1 HSPs)
scaffold0406 (41-129)||(6754-6843)
[»] scaffold0148 (1 HSPs)
scaffold0148 (15-134)||(33111-33231)
[»] scaffold0244 (1 HSPs)
scaffold0244 (44-91)||(16809-16856)
[»] scaffold0110 (1 HSPs)
scaffold0110 (61-134)||(47692-47766)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-105; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 47459668 - 47459399
Alignment:
Q  10 tatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgcgcagcttgttgtctgtt 109  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||||||| |    
T  47459668 tatgcatagcaatgttatgtctcctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaaggtctagcgcgcagcttgttgtctgct 47459569  T
Q  110 tgccttctattcatgtgtaagtaatattgatcgtaaatattaatagtattgatagaagagatgagtttgtaaaggaaacacttgatcaagtgaattaaca 209  Q
    || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  47459568 tggctcctattcatgtgtaaggaatattgatcgtaaatattaatagtattgatagaagagatgagtttgtaagggaaacacttgatccagtgaattaaca 47459469  T
Q  210 aaatttaggagatttgagatttgttatgattttttaaaggtcggtgatatttacaaatgttttaattacac 280  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||||||    
T  47459468 aaatttaggagatttgagatttgttataatttttt-aaggttggtgatacttacaaatgttttaattacac 47459399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 362 - 573
Target Start/End: Complemental strand, 47459317 - 47459107
Alignment:
Q  362 cagaacttttcaaagcaatttttaaattcgtttctttaacaagtgatctaaaagtaatatttaaacattgagatattcttacatcaattctcacctaaca 461  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47459317 cagaacttttcaaagtaatttttaaattcgtttctttaacaagtgatctaaaagtaatatttaa-cattgagatattcttacatcaattctcacctaaca 47459219  T
Q  462 cattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtgattttaattaaggaaatggaaacataaatggtgatggtgg 561  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||||    
T  47459218 cattattcttacatccaaccaataaaaaaatgacacatgttattaactttaaaaaaagtgattttaattaaggaaatggaaacataaatgatgatggtgg 47459119  T
Q  562 ttcttgtcggtt 573  Q
    ||||||||||||    
T  47459118 ttcttgtcggtt 47459107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 694 - 839
Target Start/End: Complemental strand, 47457858 - 47457713
Alignment:
Q  694 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47457858 ttgatctttcgtgtgacaccatccaaacaagcttcaattctccttttaccatcattcaagcttctaaccaccaccatggaagcaagctaaacaaagacct 47457759  T
Q  794 tcacaccaccttccacaatcatatcgaatccatccaccacaacccg 839  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||    
T  47457758 tcacaccaccttccacaatcatctcgaatcaatccaccacaacccg 47457713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 22346865 - 22346756
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| || ||| ||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |    
T  22346865 atgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaag 22346766  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  22346765 tgtaaataat 22346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 5454047 - 5453942
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcg 142  Q
    ||||||||||| |  ||||||| ||||| ||||||||||||||||||| |||||||||||| | | |||||| ||||||||||||||||||||||||| |    
T  5454047 aatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatag 5453948  T
Q  143 taaata 148  Q
    ||||||    
T  5453947 taaata 5453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 434 - 573
Target Start/End: Original strand, 19563357 - 19563497
Alignment:
Q  434 atattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtgattttaattaag 533  Q
    |||||||| ||| || ||||||| || |||| ||||||||| |||||||||||||  ||| ||||| |||||||||||       |||||||||||||||    
T  19563357 atattcttgcataaactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattattaacttttaaaaaagtgattttaattaag 19563456  T
Q  534 gaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||||| |||||||||||||| | ||||||| |||||||||    
T  19563457 gaaatgaaaacataaatggtggtgggtggtttttgtcggtt 19563497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 28493486 - 28493577
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| |||||||||| |||||| ||||    
T  28493486 aatgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataat 28493577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 432 - 573
Target Start/End: Original strand, 43824194 - 43824339
Alignment:
Q  432 agatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt---nnnnnnngtgattttaa 528  Q
    |||||||||| |||||| ||||||  ||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||           |||||||||    
T  43824194 agatattcttgcatcaactctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttattaactttaaaaaaaatgttgattttaa 43824293  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||||| |||||||||||||| | |||||||||| ||||||    
T  43824294 ttaaggaaatgaaaacataaatggtggtgggtggttcttatcggtt 43824339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 34644554 - 34644407
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||| ||||| ||||||||||| ||| || ||||||||||| | || |||||||||||||||||||||| ||||||| |||||| |||||| |     
T  34644554 gttatgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcggcgcagtttgttgccc 34644455  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatattaata 154  Q
    | || ||| ||||| |||| ||  |||||||||| ||||||| |||||    
T  34644454 gcttacctcctatttatgtatatataatattgatagtaaataataata 34644407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 19035426 - 19035340
Alignment:
Q  49 tgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||| ||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataat 19035340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 868529 - 868647
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || |||  ||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||| | | |||||    
T  868529 atagcaatgtcatgtctcctaagtccatgaat--tgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 868626  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  868627 ttctattcaagtgtaaataat 868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 31737491 - 31737568
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  31737491 gaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttctattcaagtgtaaataat 31737568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 24177637 - 24177757
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  || ||||||| ||| || ||||||||||||| |||||||| |||||||| ||||||||||||||| | ||||||||||| | | ||| |    
T  24177637 atagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagcttgttgcccgcttgtc 24177736  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  24177737 ttctattcaagtgtaaataat 24177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 573
Target Start/End: Complemental strand, 36384434 - 36384310
Alignment:
Q  450 tctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnn-gtgattttaattaaggaaatggaaacataa 548  Q
    ||||||| ||||||| ||||||||| ||||||||||||| |||  || ||||||||||||||        ||||||||||||||||||||||||||||||    
T  36384434 tctcacccaacacatcattcttacacccaaccaataaaa-aataacatatgttattaactttaaaaaagtgtgattttaattaaggaaatggaaacataa 36384336  T
Q  549 atggtgat-ggtggttcttgtcggtt 573  Q
    ||| || | |||||||||||||||||    
T  36384335 atgatggtgggtggttcttgtcggtt 36384310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 48841200 - 48841340
Alignment:
Q  7 agttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtc 105  Q
    ||||||| |||  |||| |||||||||||  ||||| ||| || |||| | ||||||||||||||| ||||||||| ||||||| ||||| |||||||||    
T  48841200 agttatgcataataatgttatgtctcctaaatctatgaatattatgtttacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtc 48841299  T
Q  106 tgtttgccttctattcatgtgtaagtaatattgatcgtaaa 146  Q
     | || |||  ||||||||||||||||||||| || |||||    
T  48841300 cgcttacctcatattcatgtgtaagtaatattaatagtaaa 48841340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 21472984 - 21472864
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || ||||||| ||||| ||||| || |||||||||||||||||||||||| ||||| ||| ||| | | ||||     
T  21472984 atagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaacttattgcccgcttgca 21472885  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  21472884 ttctattcaagtgtaaataat 21472864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 28041253 - 28041373
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||  ||| ||| || ||||||||| ||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||| |    
T  28041253 atagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaaggtctagcggcggagcttgttgtccgcttgtc 28041352  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||| | |||||| ||||    
T  28041353 ttctatttaagtgtaaataat 28041373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 653 - 697
Target Start/End: Complemental strand, 47459026 - 47458982
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47459026 gaggtgttagattttaattggttgggtgtaagaatgatgtgttga 47458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 4611159 - 4611062
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattca 122  Q
    |||||||||| ||| || ||| ||||||||| || ||||||||||| |||||||||||||||| | || |||||||||||| | ||||||| ||||||    
T  4611159 atgtctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgccttttattca 4611062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 2764456 - 2764372
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgtt 102  Q
    ||||| |||||||| || ||| |||||||||||||| | || |||||||||| |||||||||||||| |||| ||||||||||||    
T  2764456 caatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagcggcgcagcttgtt 2764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 1114023 - 1114114
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||| | |||||||| |||||||||||||||||||||| | || |||||||||| | | ||| |||||||||| |||||| ||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataat 1114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 30688509 - 30688418
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||| | |||||||| |||||  ||||||||||| |||||| |||||||||||| | | ||||| ||||||||||||||| ||||    
T  30688509 aatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatctattcatgtgtaattaat 30688418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 656 - 695
Target Start/End: Original strand, 37028789 - 37028828
Alignment:
Q  656 gtgttagattttaattggttgggtgtaagaatgatgtgtt 695  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37028789 gtgttagattttaattggttgggtgtaagaatgatgtgtt 37028828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 573
Target Start/End: Original strand, 41677820 - 41677874
Alignment:
Q  520 tgattttaattaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||    
T  41677820 tgattttaattaaggaaatggaaacataaatggtggtgggtggttattgtcggtt 41677874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 45835334 - 45835431
Alignment:
Q  37 gtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||| ||||||||||| | ||||||||||||||||||||||||| ||||||| |||||| || ||| | |||| | ||||||||| |||||| ||||    
T  45835334 gtctatgaatgttgtgtttacgaggattgattttgccatccaaaaa-gtctagctgcgcagtttattgcccgtttcctttctattcaagtgtaaataat 45835431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 2898654 - 2898614
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaagg 84  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  2898654 aatgttgtgtttaagaggattgattttgccatccaaaaagg 2898614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 7213178 - 7213104
Alignment:
Q  61 gattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||| |||| ||||||||||||||||||| ||||| ||||||| | | |||||||||||||| |||||| ||||    
T  7213178 gattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 7213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 18802988 - 18802924
Alignment:
Q  62 attgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtg 126  Q
    ||||||||||| |||||||||| ||||||| | |||||| ||||||||||| ||||||||||||||    
T  18802988 attgattttgcaatccaaaaag-tctagcgacacagcttattgtctgtttgtcttctattcatgtg 18802924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 20259949 - 20260038
Alignment:
Q  41 ataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaa 129  Q
    |||||||||||||| |   |||||| |||||||||||||||||||||||| |||||| |||||| |   ||| |||||||||| ||||||    
T  20259949 ataaatgttgtgtttatatggattggttttgccatccaaaaaggtctagcggcgcagtttgttgccccattgtcttctattcaagtgtaa 20260038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 37028555 - 37028616
Alignment:
Q  432 agatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatg 493  Q
    |||||||||| |||||| ||||||| || |||| ||||||||| ||||||||||||| ||||    
T  37028555 agatattcttgcatcaactctcaccgaatacatcattcttacacccaaccaataaaaaaatg 37028616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 25376040 - 25376077
Alignment:
Q  97 cttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| |||||||||||||||||||||||| ||||    
T  25376040 cttgttgtttgtttgccttctattcatgtgtaattaat 25376077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 697
Target Start/End: Complemental strand, 43824251 - 43824218
Alignment:
Q  664 ttttaattggttgggtgtaagaatgatgtgttga 697  Q
    |||| |||||||||||||||||||||||||||||    
T  43824251 tttttattggttgggtgtaagaatgatgtgttga 43824218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 4e-37; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 26772745 - 26772602
Alignment:
Q  9 ttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctg 107  Q
    ||||| ||| ||||| ||||||||||| ||| || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| | |    
T  26772745 ttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccg 26772646  T
Q  108 tttgccttctattcatgtgtaagtaatattgatcgtaaatatta 151  Q
     |||||| |||||||||||||||||||||||||  |||||||||    
T  26772645 cttgcctcctattcatgtgtaagtaatattgataataaatatta 26772602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 39583355 - 39583475
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||  || ||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||     
T  39583355 atagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgct 39583454  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    |||||||||||||||||||||    
T  39583455 ttctattcatgtgtaagtaat 39583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 38670998 - 38671141
Alignment:
Q  7 agttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtc 105  Q
    ||||||| ||||||||| ||||||||||| ||| || ||||||||||  | |||||||| |||||||||| ||||| ||||||| |||||||||||||||    
T  38670998 agttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttgtc 38671097  T
Q  106 tgtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
     | || ||| ||||| |||||||| |||||||||| ||||||||    
T  38671098 cgcttacctcctatttatgtgtaaataatattgatagtaaatat 38671141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 32546765 - 32546656
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| | | |||||||||||||| |    
T  32546765 atgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgccttctattcaag 32546666  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  32546665 tgtaaataat 32546656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 35637354 - 35637209
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgattttaa 528  Q
    ||||| ||||| ||| || ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||||||||         ||||||||||    
T  35637354 gagattttcttgcatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgattttaa 35637255  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    || ||||||||||||||||||| ||| | ||||||||||| |||||    
T  35637254 tttaggaaatggaaacataaatagtggtgggtggttcttgccggtt 35637209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 44198755 - 44198627
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtct 106  Q
    |||||| |||||||||  |||||||||| ||| || |||||||||||   ||  ||||||||||||||||||||||||  |||| | ||||||||||||     
T  44198755 gttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttgagcgacacagcttgttgtcc 44198656  T
Q  107 gtttgccttctattcatgtgtaagtaata 135  Q
    | |||||||||||||| |||||| |||||    
T  44198655 gcttgccttctattcaagtgtaaataata 44198627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 431 - 573
Target Start/End: Original strand, 3984431 - 3984575
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnn-gtgattttaat 529  Q
    |||||||||||  || |||||||||| || |||| ||||||| |  | |||||||||| |||| |||||||||||||||||        ||||||||||     
T  3984431 gagatattctttgatgaattctcaccaaagacatcattcttaaactcgaccaataaaaaaatgacacatgttattaactttaaaaaagtgtgattttaac 3984530  T
Q  530 taaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||    
T  3984531 taaggaaatagaaacataaatggtggtgggtggttcttgtcggtt 3984575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 430 - 573
Target Start/End: Original strand, 2663222 - 2663367
Alignment:
Q  430 tgagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtg--atttta 527  Q
    ||||||||||||  || || ||||||  ||||||| ||||||||| | ||||||||||| |||| || ||||||||||||||       |||  ||||||    
T  2663222 tgagatattcttgtatgaactctcactcaacacatcattcttacaccaaaccaataaaa-aatgacatatgttattaactttaaaaaaagtgtgatttta 2663320  T
Q  528 attaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||||||||||||||||||||| | |||||||||||| ||||    
T  2663321 attaaggaaatggaaacataaatggtggtgggtggttcttgtaggtt 2663367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 458 - 570
Target Start/End: Complemental strand, 49323285 - 49323171
Alignment:
Q  458 aacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnn-gtgattttaattaaggaaatggaaacataaatggtgat 556  Q
    ||||||| ||||||||| | |||||||||||  ||| |||||||| ||||||||        |||||||||||||||||||||||||||||||||||| |    
T  49323285 aacacatcattcttacacctaaccaataaaaagatgacacatgttgttaactttaaaaaagtgtgattttaattaaggaaatggaaacataaatggtggt 49323186  T
Q  557 -ggtggttcttgtcg 570  Q
     ||||||||||||||    
T  49323185 gggtggttcttgtcg 49323171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 53785690 - 53785570
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || |||||| |||| | |||||||| ||||||||||||| |||||| ||| ||| ||||||||| | | |||||    
T  53785690 atagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcccgcttgcc 53785591  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  53785590 ttctattcaagtgtaaataat 53785570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 44783 - 44694
Alignment:
Q  46 tgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||||  ||||||  |||||||||||||||||||||||| |||||| |||||| | | |||||||||||||| |||||| ||||    
T  44783 tgttgtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgccttctattcaagtgtaaataat 44694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 37133125 - 37133240
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||  || ||||||||||| |  ||||||| |||||| ||||||||||||||||| |||||| ||||||||   ||| |    
T  37133125 atagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaaggtctagcggcgcagtttgttgtcccattgtc 37133224  T
Q  114 ttctattcatgtgtaa 129  Q
    ||||||||| ||||||    
T  37133225 ttctattcaggtgtaa 37133240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 32691002 - 32691060
Alignment:
Q  25 tatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaag 83  Q
    ||||||||||| |||||| ||||||||||| |||||||||||||||  |||||||||||    
T  32691002 tatgtctcctaagtctatgaatgttgtgtttaagaggattgattttatcatccaaaaag 32691060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 49017919 - 49017827
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaag-gtctagcgcgcagcttgttgtctgtttgccttctattcatgtgtaagtaata 135  Q
    ||||||||||| | ||||||||||||||||||||||||||  ||    | ||||||||||||| | |||||||||||||| |||||| |||||    
T  49017919 aatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagcttgttgtccgcttgccttctattcaagtgtaaataata 49017827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 8592077 - 8592002
Alignment:
Q  60 ggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||  |   ||||||| ||||||||||||||||||    
T  8592077 ggattgattttgccatccaaaaaggcccagcggcgcagcttgttacccacttgccttatattcatgtgtaagtaat 8592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 26276567 - 26276520
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||||    
T  26276567 aatgttgtgtttatgaggattgattttgccatccaaaaagatctagcg 26276520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 3376880 - 3376978
Alignment:
Q  31 tcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgta 128  Q
    ||||| |||||| ||||||||||| | || ||||||||||| |||| |||||| |||| | | |||||||||| | ||||||||||||| | |||||||    
T  3376880 tcctatgtctatgaatgttgtgtttatgatgattgattttgtcatctaaaaagatctaacggtgcagcttgttatatgtttgccttctacttatgtgta 3376978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 696
Target Start/End: Complemental strand, 35637127 - 35637085
Alignment:
Q  654 aggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    ||||||| |||||||||||||||||||||| ||||||||||||    
T  35637127 aggtgtttgattttaattggttgggtgtaaaaatgatgtgttg 35637085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 2601778 - 2601689
Alignment:
Q  47 gttgtgttcaagaggattgattttgccatccaaaaaggtctagcgc-gcagcttgttgtctgtttgccttctattcatgtgtaagtaata 135  Q
    |||||||| | |||||||||||||||||    |||| ||||| ||  ||||||||||||| ||||| ||||||||||||||||| |||||    
T  2601778 gttgtgtttacgaggattgattttgccactgtaaaaagtctaacgatgcagcttgttgtccgtttgtcttctattcatgtgtaattaata 2601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 26856888 - 26856977
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttg 103  Q
    |||||||||  |||||||||| || ||| ||||||||| |   |||||||| |||| ||||||||||||| ||||| |||||||||||||    
T  26856888 atagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagcttgttg 26856977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 26393812 - 26393888
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    ||||||||  ||||||||||  |||||| ||||||||||| | |||||||||| || |||||||| ||||| |||||    
T  26393812 atagcaatattatgtctccttggtctatgaatgttgtgtttacgaggattgatatttccatccaacaaggtttagcg 26393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 46940928 - 46941019
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgc-gcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||| | ||  ||||||||||  ||||||||||  ||||||  ||| ||||||| |||||| |||||||||||||||||| ||||    
T  46940928 aatgttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgcctgtttaccttctattcatgtgtaattaat 46941019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 653 - 695
Target Start/End: Original strand, 3984657 - 3984699
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 695  Q
    |||||||| |||||||||||||||| | |||||||||||||||    
T  3984657 gaggtgtttgattttaattggttggatttaagaatgatgtgtt 3984699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 5338598 - 5338552
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc 90  Q
    ||||||||||| | |||||||| ||||||||||||||| ||||||||    
T  5338598 aatgttgtgtttacgaggattggttttgccatccaaaatggtctagc 5338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 25324933 - 25324891
Alignment:
Q  92 cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||    
T  25324933 cgcaccttattgtctgtttgccttctattcatatgtaagtaat 25324891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 431 - 493
Target Start/End: Original strand, 28212599 - 28212661
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatg 493  Q
    ||||||||||| ||| || ||||| | ||||||| ||||||||| ||||||||||||| ||||    
T  28212599 gagatattcttgcataaactctcatccaacacatcattcttacacccaaccaataaaaaaatg 28212661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 13582480 - 13582415
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    |||||||||| | | || ||||||||||| | || ||||||||| |||||||||||||| ||||||    
T  13582480 atgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggcctagcg 13582415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 50657312 - 50657231
Alignment:
Q  61 gattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatc 141  Q
    ||||| |||||| || ||||||| ||||||| || || |||||||| | ||| ||  |||||||||||||||||||||||||    
T  50657312 gattggttttgctattcaaaaagatctagcgacgtagtttgttgtcagcttgtctcatattcatgtgtaagtaatattgatc 50657231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 3e-35; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 21326964 - 21327084
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    ||||||||| ||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  21326964 atagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctgcttgcc 21327063  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  21327064 ttctattcaagtgtaaataat 21327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 28517406 - 28517547
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtct 106  Q
    |||||| ||| ||||| ||||||||||| ||| || ||||||||||| | |||||||| |||||||||||||||| |||||||| | |||||||||| |     
T  28517406 gttatgcataacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtctagcgacacagcttgttgccc 28517505  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaata 148  Q
    || ||||| ||||||||||||||||||||||||| |||||||    
T  28517506 gtctgcctcctattcatgtgtaagtaatattgatagtaaata 28517547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 45003015 - 45003145
Alignment:
Q  7 agttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtc 105  Q
    ||||||| ||||||||| |||||||| || | | || ||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| |||||    
T  45003015 agttatgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtc 45003114  T
Q  106 tgtttgccttctattcatgtgtaagtaatat 136  Q
     | |||||| |||||||||||||||||||||    
T  45003115 cgcttgcctcctattcatgtgtaagtaatat 45003145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 5825261 - 5825128
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtc-tagcgcgcagcttgttgtct 106  Q
    |||||| ||||||||| ||||||||||| ||||||  |||||||||| | |||||||| |||||||||| ||||||||| ||  ||||||||||||  ||    
T  5825261 gttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgttacct 5825162  T
Q  107 gtttgccttctattcatgtgtaagtaatattgat 140  Q
    | |||||| ||||||||||||||| |||||||||    
T  5825161 gcttgcctcctattcatgtgtaagaaatattgat 5825128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 40726599 - 40726725
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||| |||||||||||||||||  || || ||||||||||| | ||||||||||||||||||||||||| ||||| |  |||||||||||| |     
T  40726599 gttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgccc 40726698  T
Q  107 gtttgccttctattcatgtgtaagtaa 133  Q
    | |||||| ||||||||||||||||||    
T  40726699 gcttgcctcctattcatgtgtaagtaa 40726725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 38766258 - 38766172
Alignment:
Q  62 attgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaat 147  Q
    |||| |||||||||||||||||||||||| ||||||||||||| | | |||||| ||||||||||||||||||||||||| ||||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagtaaat 38766172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 982919 - 982822
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattca 122  Q
    |||||| ||| ||| || ||||||||||||| |||||||| | ||||||||||||||||||||||| | |||||||||| ||||||||||||||||||    
T  982919 atgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctgtttgccttctattca 982822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 24879216 - 24879071
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnn--gtgattttaa 528  Q
    ||||||||||| ||| || ||||||| ||||||||||||||||| || | ||||||||  ||| || ||||||||||||||         ||||||||||    
T  24879216 gagatattcttgcatgaactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttattaactttaaaaaaaatgtgattttaa 24879117  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||    
T  24879116 ttaaggaaatggaaacataaatggtggtgggtggtttttgtcggtt 24879071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 45613982 - 45614076
Alignment:
Q  29 tctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattca 122  Q
    ||||||| ||| || ||||||||||| | |||||||| ||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||    
T  45613982 tctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 45614076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 38832225 - 38832150
Alignment:
Q  73 catccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaat 147  Q
    ||||||||||||||||||| |||||||||||| | | |||||| |||||||| |||||||||||||||| ||||||    
T  38832225 catccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatagtaaat 38832150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 25187057 - 25187177
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  ||||||||||  || || ||||||||||||   | |||||||||| ||||| |||||| |||||| ||||||||||||| | | |||||    
T  25187057 atagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttaccatctaaaaagatctagcggcgcagcttgttgcccgcttgcc 25187156  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  25187157 ttctattcaagtgtaaataat 25187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 27027758 - 27027832
Alignment:
Q  17 agcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    |||||||  |||||||||| ||| || ||||||||||||| |||||||| |||||| |||||||||| |||||||    
T  27027758 agcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaagatctagcg 27027832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 458 - 554
Target Start/End: Complemental strand, 48065109 - 48065011
Alignment:
Q  458 aacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnng--tgattttaattaaggaaatggaaacataaatggtg 554  Q
    ||||||||||||||||| |||||||||||||  ||| |||||||||||||||||       |  |||||||| || |||||||||||||||||| ||||    
T  48065109 aacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaaagtttgattttacttgaggaaatggaaacataaacggtg 48065011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 2904346 - 2904242
Alignment:
Q  30 ctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgta 128  Q
    |||||| |||||| ||||||||||| | ||  |||| |||||| |||||||||||| ||| | || |||||||||||||| || ||||||||||||||||    
T  2904346 ctcctaggtctatgaatgttgtgtttacgataattggttttgctatccaaaaaggt-tagtggcgtagcttgttgtctgtatgtcttctattcatgtgta 2904248  T
Q  129 agtaat 134  Q
    | ||||    
T  2904247 attaat 2904242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 36931887 - 36931963
Alignment:
Q  73 catccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    ||||||||||| ||||||| ||||||||||| || | |||||| |||||||| |||||||||||||||| ||||||||    
T  36931887 catccaaaaag-tctagcggcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatagtaaatat 36931963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 45974736 - 45974845
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctag-cgcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||  || ||||||||||| |  |||||  |||||| |||||||||||||||||  ||||||||||||||| | ||| |||||||||| |    
T  45974736 atgtctcctaggttcatgaatgttgtgtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattcaag 45974835  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  45974836 tgtaaataat 45974845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 27521441 - 27521385
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaa 82  Q
    |||||||||| |||||| ||||||||||| | ||||||||||||||||||| |||||    
T  27521441 atgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 30216184 - 30216268
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgcgcagctt 99  Q
    |||||||||  || ||||||| |||||| ||||||||||||| |||||| ||||||| ||| ||||||| || || |||||||||    
T  30216184 atagcaatgtcatatctcctaggtctatgaatgttgtgttcacgaggatcgattttgtcattcaaaaagatcgagggcgcagctt 30216268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 48539162 - 48539094
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaag 83  Q
    |||||||||  |||||||||| ||| || ||||||||||| | |||||||| |||||||||||||||||    
T  48539162 atagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 19277274 - 19277164
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaa--gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttg 111  Q
    |||||||||  |||||||||| ||| || |||||||||||||   ||  |||| |||||||||||||||||||||||| ||||||||| ||| | |  ||    
T  19277274 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaaggtctagcggcgcagcttattgcccgcctg 19277175  T
Q  112 ccttctattca 122  Q
    |||||||||||    
T  19277174 ccttctattca 19277164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 23037533 - 23037457
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaagg 84  Q
    |||||| |||||||||  || |||| || |||||| ||| ||||||| | ||||||||||||||||||| |||||||    
T  23037533 gttatgcatagcaatgtcatttctcttaggtctatgaattttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 24527570 - 24527482
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgtt 102  Q
    |||||||||  || ||||||  ||| || |||||||| |||| |||||||| ||||| ||||||||||| |||||| ||||||||||||    
T  24527570 atagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaagatctagcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 41117896 - 41117972
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    |||||||||  |||| ||||| ||| || ||||||||||||| || |||||||||||| ||||||||| ||| ||||    
T  41117896 atagcaatgtcatgtttcctaggtccatgaatgttgtgttcacgatgattgattttgctatccaaaaaagtccagcg 41117972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 2520924 - 2520967
Alignment:
Q  91 gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  2520924 gcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2520967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 32336359 - 32336318
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggt 85  Q
    |||||||||||||  | |||||||||||||||||||||||||    
T  32336359 aatgttgtgttcacaaagattgattttgccatccaaaaaggt 32336318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 48064843 - 48064896
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaat 484  Q
    |||| |||||||||| |||||  ||| ||||||||||||||||||| |||||||    
T  48064843 gagaaattcttacatgaattcgtacccaacacattattcttacatctaaccaat 48064896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 17249425 - 17249565
Alignment:
Q  9 ttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctg 107  Q
    ||||||||||||||| ||||||||||| ||  || ||||||||||| | |||||||| |||||||||||||||||||||||| ||||||||||||| | |    
T  17249425 ttatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccg 17249524  T
Q  108 tttgccttctattcatgtgtaagtaatattgatcgtaaata 148  Q
     |||||| |||||||||| |||||||||||||| |||||||    
T  17249525 cttgcctcctattcatgtataagtaatattgatagtaaata 17249565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 7749433 - 7749327
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgc-gcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcg 142  Q
    ||||||||||| | |||||||| ||||||||||| |||||||||||||  ||||||||||| | | |||||| |||||||||||||| |||||||||| |    
T  7749433 aatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaatattgatag 7749334  T
Q  143 taaatat 149  Q
    |||||||    
T  7749333 taaatat 7749327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 33220830 - 33220972
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtct 106  Q
    |||||| ||||||||| | ||||| ||| ||| || ||||||| ||| | ||  |||| ||||||||||| ||||||||||||| |||||||||||| |     
T  33220830 gttatgcatagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttgttggcc 33220929  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    | |||||| ||||||||||||||||||||||||| ||| ||||    
T  33220930 gcttgcctcctattcatgtgtaagtaatattgatagtatatat 33220972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 3137373 - 3137488
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || ||||||||||| | |||||||| ||||||||||||||||||  |||| | ||| ||||||| | |||||||    
T  3137373 atagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgcc 3137472  T
Q  114 ttctattcatgtgtaa 129  Q
    ||| ||||||||||||    
T  3137473 ttccattcatgtgtaa 3137488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 357842 - 357966
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    ||||||||| ||| ||||||| ||| || ||||||||||| | || |||| ||||||||||| ||||| || |||| ||  ||||||||||| ||||| |    
T  357842 atagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaatgtatagcggcatagcttgttgtcggtttgtc 357941  T
Q  114 ttctattcatgtgtaagtaatattg 138  Q
    | |||||||| ||||||||||||||    
T  357942 tcctattcatatgtaagtaatattg 357966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 28009160 - 28009228
Alignment:
Q  62 attgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaa 129  Q
    ||||||||||| ||||||||||| ||| || |||||||| ||||| |||||||||||||||||||||||    
T  28009160 attgattttgcaatccaaaaaggcctaacgacgcagcttattgtccgtttgccttctattcatgtgtaa 28009228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 28543374 - 28543258
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttct 117  Q
    ||||| ||||| ||||| ||| |||||| || |||| |||||||||| ||||||||||  ||||| ||||||| |||| ||  ||||| | |||||||||    
T  28543374 caatgttatgtttcctaggtccataaatattatgtttaagaggattggttttgccatctgaaaagatctagcggcgcaactaattgtccgcttgccttct 28543275  T
Q  118 attcatgtgtaagtaat 134  Q
    ||||||| |||||||||    
T  28543274 attcatgcgtaagtaat 28543258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 32115688 - 32115591
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattca 122  Q
    |||||||||| ||| || ||||||||||| | || |||||||||||| ||| ||||||||||||| | | | |||||||| |||||| ||||||||||    
T  32115688 atgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaaaaaggtctagcggtggaacttgttgtttgtttgtcttctattca 32115591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 34304485 - 34304401
Alignment:
Q  7 agttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    ||||||| ||||||||   ||||||| || |||||| |||||||| || | ||||||||||||||| |||||||||||| |||||    
T  34304485 agttatgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaaggtatagcg 34304401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 28625890 - 28625791
Alignment:
Q  37 gtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaata 135  Q
    |||||| ||||||||||| | |  ||||||||||||||| ||||||| |||||| ||||||||| ||  | |||||||||||||| | |||||| |||||    
T  28625890 gtctatgaatgttgtgtttacggagattgattttgccattcaaaaagatctagcggcgcagcttattacccgtttgccttctatttaagtgtaaataata 28625791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 34168872 - 34168782
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||| | |||||||| |||||| ||||||||||| |||||| |||| ||||| | | | ||||||||||||||||||||| ||||    
T  34168872 aatgttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttctattcatgtgtaattaat 34168782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 959562 - 959493
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaagg 84  Q
    ||||||||| | ||||||||| ||| || ||||||||||| | |||||||||||||| |||| |||||||    
T  959562 atagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaagg 959493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 32531053 - 32531109
Alignment:
Q  93 gcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    |||||||||||||||  || ||  |||||||||||||||||||||||| ||||||||    
T  32531053 gcagcttgttgtctgcgtgtctcatattcatgtgtaagtaatattgatagtaaatat 32531109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 749501 - 749562
Alignment:
Q  62 attgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattca 122  Q
    ||||||||||||||||||||| ||||  || | |||||||||||| | ||||||||||||||    
T  749501 attgattttgccatccaaaaacgtctgacgacacagcttgttgtccgcttgccttctattca 749562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 50001045 - 50001187
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||||||||| |||||||||||  || |||||||||||||| | || ||||||||||||||||||||||| |||||| ||||||||||||| |     
T  50001045 gttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgccc 50001144  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    | |||||| |||||||||||||||||||||| || ||||||||    
T  50001145 gcttgcctcctattcatgtgtaagtaatattaatagtaaatat 50001187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 3329984 - 3329842
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||||||||| ||||||||||| ||| || |||| |||||| | || ||||| |||||||||||||||||||||||| ||||||||||||| |     
T  3329984 gttatgcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttgttgccc 3329885  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    | |||||| ||||||| ||||||||||||||||| ||||||||    
T  3329884 gcttgcctcctattcacgtgtaagtaatattgatagtaaatat 3329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 53619574 - 53619430
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||| ||||| |||||||| || ||| || ||||||||||| | ||| |||| |||||||||||||||||||||||| ||||||||||||| ||    
T  53619574 gttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgcct 53619475  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatatta 151  Q
      || ||| ||||||||||||||||||||||||| ||||||||||    
T  53619474 acttacctcctattcatgtgtaagtaatattgatagtaaatatta 53619430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 30940874 - 30940978
Alignment:
Q  31 tcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaa 129  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||| ||||||    
T  30940874 tcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgccttctattcaagtgtaa 30940973  T
Q  130 gtaat 134  Q
     ||||    
T  30940974 ataat 30940978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 23255701 - 23255558
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||| ||||| ||||||||||| ||| || ||| ||||||| | ||||||||||||||||||||| ||| ||||||| |||||||||||||||     
T  23255701 gttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatccagaaaagtctagcggcgcagcttgttgtcc 23255602  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatatt 150  Q
    | || ||| |||||||| ||| |||||||||||| |||||||||    
T  23255601 gcttacctcctattcatatgtgagtaatattgatagtaaatatt 23255558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 55933596 - 55933712
Alignment:
Q  25 tatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcat 123  Q
    ||||||||||| |||  | ||||||||||| | || |||||||||||||||||||||| |||||||| ||||| |||||||| | |||||| ||||||||    
T  55933596 tatgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgcttgcctcctattcat 55933695  T
Q  124 gtgtaagtaatattgat 140  Q
    ||| |||||||||||||    
T  55933696 gtgcaagtaatattgat 55933712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 458 - 569
Target Start/End: Original strand, 50470028 - 50470142
Alignment:
Q  458 aacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtg--attttaattaaggaaatggaaacataaatggtga 555  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||||||||||       |||  |||||| ||||||||||||||||||||||||||     
T  50470028 aacacattattcttacatccaaccaataaaaatatgacacatgttattaactttaaaaaaagtgtaattttatttaaggaaatggaaacataaatggtgg 50470127  T
Q  556 t-ggtggttcttgtc 569  Q
    | |||||||||||||    
T  50470128 tgggtggttcttgtc 50470142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 39001384 - 39001260
Alignment:
Q  9 ttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctg 107  Q
    ||||| ||| ||||| | ||||||||| ||| || ||||||||||| | |||||||| ||||| |||||||||||||||||| |||||| |||||| | |    
T  39001384 ttatgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccg 39001285  T
Q  108 tttgccttctattcatgtgtaagta 132  Q
     |||||| |||||||||||||||||    
T  39001284 cttgcctcctattcatgtgtaagta 39001260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 48657035 - 48657170
Alignment:
Q  9 ttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgcgcagcttgttgtctgt 108  Q
    ||||| ||||||||| |||||||| || |||||| ||||||||||| | || ||||||||||||| ||||||||| ||||| | |  |||||||| |||     
T  48657035 ttatgcatagcaatgttatgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaagatctagtg-gtggcttgttgcctgc 48657133  T
Q  109 ttgccttctattcatgtgtaagtaatattgatcgtaa 145  Q
    ||| || |||||||||| |||||||||||||| ||||    
T  48657134 ttggctcctattcatgtataagtaatattgatagtaa 48657170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 4419251 - 4419122
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||| ||||| ||||||||||| ||| || ||||||||||| | || ||||| ||||||||||||||||  |||||| ||||||||||||| |     
T  4419251 gttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgatgattggttttgccatccaaaaa-atctagcggcgcagcttgttgccc 4419153  T
Q  107 gtttgccttctattcatgtgtaagtaatatt 137  Q
    | |||||| ||||||||||| ||||||||||    
T  4419152 gcttgcctcctattcatgtgcaagtaatatt 4419122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 40392722 - 40392800
Alignment:
Q  57 agaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||||| ||||    
T  40392722 agaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataat 40392800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 12053415 - 12053329
Alignment:
Q  48 ttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaa 133  Q
    ||||||| | ||| |||| |||||||||| ||||||| | |||| |||||||||||||||| |||||||||||||||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaagtaa 12053329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 23605028 - 23604951
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||| ||||    
T  23605028 gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataat 23604951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 31847071 - 31846962
Alignment:
Q  28 gtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtg 126  Q
    |||||||| ||| || |||||||||||   |||||||  || ||||||||||||||||||||| |||||| |||||| | | |||||| |||||||||||    
T  31847071 gtctcctaggtccatgaatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgtg 31846972  T
Q  127 taagtaatat 136  Q
    ||||||||||    
T  31846971 taagtaatat 31846962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 41372253 - 41372320
Alignment:
Q  74 atccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgat 140  Q
    ||||| ||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||    
T  41372253 atccacaaaggtctagcagcgcaacttgttgtctgcttgcctcctattcatgtgtaagtaatattgat 41372320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 53170464 - 53170386
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattca 122  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||||| | ||||| ||||||||| ||||||||||||||    
T  53170464 aatgttgtgttcacgaggattgattttgctatctaaaaaggtctagcagtgcagc-tgttgtctgcttgccttctattca 53170386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 26521440 - 26521350
Alignment:
Q  45 atgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||| | |||||||| ||||| ||||||||||||| |||| || |||||| ||||| | ||||||||||| ||||||||||||||    
T  26521440 atgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgccttctatccatgtgtaagtaat 26521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 12917984 - 12917895
Alignment:
Q  61 gattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    ||||||||||| |||||||||||||||| || | || ||| ||||||| ||||||  |||||||| ||||||||||||||| ||||||||    
T  12917984 gattgattttgtcatccaaaaaggtctaacggcacaacttattgtctgcttgcctcttattcatgagtaagtaatattgatagtaaatat 12917895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 31799412 - 31799267
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgattttaa 528  Q
    ||||| ||||| ||| || ||||||| ||||||| ||||||| |  ||| |||||||| |||| |||||||||||||||||         ||||||||||    
T  31799412 gagattttcttgcatgaactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttattaactttaaaaaaagtgtgattttaa 31799313  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||| |||||| |||||||||||||| | ||||||| |||||||||    
T  31799312 ttaaagaaatgaaaacataaatggtggtaggtggttattgtcggtt 31799267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 50464451 - 50464528
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctatt 120  Q
    ||||||||||| | ||||||| ||||||||||||||||||  ||||| ||||||||||||||| | ||||||||||||    
T  50464451 aatgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttctatt 50464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 47585156 - 47585255
Alignment:
Q  37 gtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaata 135  Q
    |||||||||| ||||||| | || ||||| ||||| |||| |||||||| ||||| || || |||||||||||||||||||||||||  ||||| |||||    
T  47585156 gtctataaattttgtgtttacgaagattggttttgtcatctaaaaaggtttagcggcgtagtttgttgtctgtttgccttctattcaaatgtaaataata 47585255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 600829 - 600938
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || |||| |||||| | || ||||  |||||||||||||||| || ||||| || ||||||||||| | |||||||||||||| |    
T  600829 atgtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaatgtatagcgacgtagcttgttgtccgcttgccttctattcaag 600928  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  600929 tgtaaataat 600938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 31799186 - 31799143
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  31799186 gaggtgttagattttaattggttgggtgtaagaattatatgttg 31799143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 6865990 - 6866064
Alignment:
Q  61 gattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||| || | ||||||||||||||| | || |||||||||| |||  ||||||||||||||||||||||    
T  6865990 gattgattttacctttcaaaaaggtctagcgacacaacttgttgtctttttatcttctattcatgtgtaagtaat 6866064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 50442609 - 50442674
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaagg 84  Q
    ||||| ||||||||||| ||  ||  |||||||||| |||||||||| ||||||||||||||||||    
T  50442609 caatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagg 50442674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 16955441 - 16955321
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| | | || ||||||||||| | |||||||||||| |||||| |||||| ||   || ||||| |||||||| | |||||    
T  16955441 atagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattgatttggccatcaaaaaagatccgacgacgcagtttgttgtccgcttgcc 16955342  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||| ||| |||||| ||||    
T  16955341 ttctactcaagtgtaaataat 16955321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 34107826 - 34107889
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaa 82  Q
    ||||| |||||||||||  || || ||||||||||||| |||||||| ||||| ||||||||||    
T  34107826 caatgttatgtctcctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaa 34107889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 519 - 573
Target Start/End: Complemental strand, 42171278 - 42171224
Alignment:
Q  519 gtgattttaattaaggaaatggaaacataaatggtgatggtggttcttgtcggtt 573  Q
    ||||||||||||||| ||||| |||||| |||||||  || ||||||||||||||    
T  42171278 gtgattttaattaagaaaatgaaaacatgaatggtgtgggcggttcttgtcggtt 42171224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 27336683 - 27336538
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||||||||||||| ||||||||||| ||| || |||||||| || |  |||||||||||||||||| ||||||||||||| | |||| || |||||     
T  27336683 gttatgtatagcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaaggtctagcggtgcagtttattgtcc 27336584  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatattaa 152  Q
    | ||| || ||||||||||||||||||||||||| |||||||||||    
T  27336583 gcttgtctcctattcatgtgtaagtaatattgatagtaaatattaa 27336538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 430590 - 430451
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| |||| |||| ||||||||||| ||| || ||||||||||| | ||||||||||| ||||||||||||||||||| | | ||||||||| ||||    
T  430590 gttatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgtngtct 430491  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaa 146  Q
    | |||||| ||||||||||| ||||||||||||| |||||    
T  430490 gcttgcctcctattcatgtgcaagtaatattgatagtaaa 430451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 43146481 - 43146337
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt-nnnnnnngtgattttaat 529  Q
    ||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||||||||        |||||||||||    
T  43146481 gagatattcttacatgaactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaagtgtgattttaat 43146382  T
Q  530 taaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||||||||| ||||||||| | ||||| |||||||||||    
T  43146381 taaggaaatggaaacgtaaatggtggtgggtgggtcttgtcggtt 43146337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 29668651 - 29668508
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgattttaa 528  Q
    ||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||  ||| |||||||| ||||||||         ||||||||||    
T  29668651 gagatattcttgcatgaactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgttgttaactttaaaaaaagtgtgattttaa 29668553  T
Q  529 ttaaggaaatggaaacataaatggtgatggtggttcttgtcggtt 573  Q
    |||||||||||||||||||||| |||  ||||||| |||||||||    
T  29668552 ttaaggaaatggaaacataaatagtgggggtggttgttgtcggtt 29668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 35310425 - 35310303
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttct 117  Q
    ||||| ||||||||||| ||| || ||||||||||| | ||| |||| |||||||||||||| |||| || || |||||||||||| | | |||||| ||    
T  35310425 caatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgcttgcctcct 35310326  T
Q  118 attcatgtgtaagtaatattgat 140  Q
    |||||||||||||||||||||||    
T  35310325 attcatgtgtaagtaatattgat 35310303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 429 - 554
Target Start/End: Complemental strand, 38089114 - 38088988
Alignment:
Q  429 ttgagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactt-tnnnnnnngtgatttta 527  Q
    ||||||||||||| |||||| ||||| | ||||||||||||||||| |||||||||||||  ||| ||||||||||||| ||         |||||||||    
T  38089114 ttgagatattcttgcatcaactctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttattaatttaaaaaaaatgtgatttta 38089015  T
Q  528 attaaggaaatggaaacataaatggtg 554  Q
    |||||||||||| ||||||||||||||    
T  38089014 attaaggaaatgaaaacataaatggtg 38088988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 32269923 - 32270045
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgcgcagcttgttgtctgtttgcct 114  Q
    |||||||||  |||||||||| ||| || ||||||||||| | |||||||||||| |||||||||||| |  ||||| ||||||||||  | | ||||||    
T  32269923 atagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagcgggcagcttgttacccgcttgcct 32270022  T
Q  115 tctattcatgtgtaagtaatatt 137  Q
    |||||||| |||||| |||||||    
T  32270023 tctattcaagtgtaaataatatt 32270045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 2917539 - 2917619
Alignment:
Q  67 ttttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaa 146  Q
    ||||||||||||||||||||||||| ||||| |||||| ||| |||||| ||||||||||||| ||||||||||| |||||    
T  2917539 ttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgtaggtaatattgatagtaaa 2917619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 13167029 - 13167161
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||| ||||||||| ||||||||||| ||| || ||||||| ||| | || |||||||| ||  |||||||||| |||||| ||||||||||||| |     
T  13167029 gttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgttatccaaaaagatctagcggcgcagcttgttgccc 13167128  T
Q  107 gtttgccttctattcatgtgtaagtaatattga 139  Q
      |||||| |||||||||||||| |||||||||    
T  13167129 acttgcctcctattcatgtgtaattaatattga 13167161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 146
Target Start/End: Original strand, 25663151 - 25663290
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtct 106  Q
    |||||| ||| ||||| |||||| |||| ||| || ||||||| ||| | ||||||||  |||| |||||||||||||||| || ||||||||||||       
T  25663151 gttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaaggtctaacgacgcagcttgttgctc 25663250  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaa 146  Q
    |||||||| || || ||||||||||||||||||| |||||    
T  25663251 gtttgcctcctttttatgtgtaagtaatattgatagtaaa 25663290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 428 - 573
Target Start/End: Original strand, 20256893 - 20257041
Alignment:
Q  428 attgagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt---nnnnnnngtgatt 524  Q
    |||||||||||||| ||| || ||||| | |||||||| |||||||| |||| ||||||||  ||| |||||||||||||||||          ||||||    
T  20256893 attgagatattcttgcataaactctcatccaacacatttttcttacacccaa-caataaaaatatgacacatgttattaactttaaaaaaaagtgtgatt 20256991  T
Q  525 ttaattaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||  ||||||||||||||||||||||||| | |||||||||||||||||    
T  20256992 ttagctaaggaaatggaaacataaatggtggtgggtggttcttgtcggtt 20257041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 33692230 - 33692304
Alignment:
Q  67 ttttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgat 140  Q
    |||| |||||||||||| ||||||| |||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  33692230 tttttccatccaaaaagatctagcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaatattgat 33692304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 2134887 - 2134742
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtg--attttaa 528  Q
    ||||||||||| ||| || ||||| | ||||||| ||| ||||| | ||||||||||| |||| |||||||| ||||||||       |||  |||||||    
T  2134887 gagatattcttgcatgaactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgttcttaactttaaaaaaagtgtgattttaa 2134788  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    | ||||||||| |||||||||||||| | |||||||||||||||||    
T  2134787 tcaaggaaatgaaaacataaatggtggtgggtggttcttgtcggtt 2134742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 2566221 - 2566310
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttg 103  Q
    |||||||||  ||||||||||  || || ||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  2566221 atagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttg 2566310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 23023565 - 23023460
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtcta-gcgcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||| | || ||||||||||| |||||||||||| ||| | ||||| ||| ||||| ||||||||| |||| |||    
T  23023565 atgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgcatcttattgtccgtttgccttttatttatg 23023466  T
Q  125 tgtaag 130  Q
    ||||||    
T  23023465 tgtaag 23023460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 24147136 - 24147191
Alignment:
Q  519 gtgattttaattaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  24147136 gtgattttaattaagtaaatggaaacataaatggtgatcggtggttcttttcggtt 24147191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 23092757 - 23092694
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctatt 120  Q
    |||||||||||||| ||||||| ||||||||||  ||||| |||||||||| ||||||||||||    
T  23092757 gaggattgattttgtcatccaacaaggtctagcaacgcagtttgttgtctgcttgccttctatt 23092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 37873786 - 37873840
Alignment:
Q  37 gtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    |||||| ||||||||||| ||||||||||||||||| ||| ||||||| ||||||    
T  37873786 gtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggcctagcg 37873840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 15292165 - 15292218
Alignment:
Q  29 tctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaa 82  Q
    ||||||| ||| || ||||||||||| | |||||||||||||||||||||||||    
T  15292165 tctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaa 15292218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 15506734 - 15506843
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    ||||||||||||||||  ||||||||||   |||  ||||||||||| | ||||||||||||| ||||| ||||||| ||| | ||||| |||||||       
T  15506734 gttatgtatagcaatgtcatgtctcctagacctacgaatgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcgcaacttgttgctc 15506833  T
Q  107 gtttgccttc 116  Q
    ||||||||||    
T  15506834 gtttgccttc 15506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 42921667 - 42921559
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| |||| | ||||||| |  ||||||| ||||||||||||||||| |||||| ||||||||||||  |   |||||||||||||| |    
T  42921667 atgtctcctaagtccataa-tattgtgtttacaaggattggttttgccatccaaaaagatctagcggcgcagcttgtttcccacttgccttctattcaag 42921569  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  42921568 tgtaaataat 42921559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 24147272 - 24147315
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| |||||||||||||||||||||||||  ||||||||    
T  24147272 gaggtgtttgattttaattggttgggtgtaagaaatatgtgttg 24147315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 29668427 - 29668384
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| |||||||||| |||| |||||||||||||||||||    
T  29668427 gaggtgtttgattttaattagttgagtgtaagaatgatgtgttg 29668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 38088899 - 38088856
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||    
T  38088899 gaggtgtttgatttcaattggttgggggtaagaatgatgtgttg 38088856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 43146255 - 43146212
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||    
T  43146255 gaggtgtttgattttaattgattgggtgtaagaatgatttgttg 43146212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 15810034 - 15809972
Alignment:
Q  11 atgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgcc 73  Q
    |||||||||||||  |||||||||| | | || ||||| ||||||| ||||||||||||||||    
T  15810034 atgtatagcaatgtcatgtctcctaggcccatgaatgtcgtgttcacgaggattgattttgcc 15809972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 26212705 - 26212783
Alignment:
Q  11 atgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctag 89  Q
    |||||| |||||  ||||||||||| ||| || |||||||| |||| |||||||| ||||||| ||| ||||| |||||    
T  26212705 atgtatggcaatattatgtctcctaagtccatgaatgttgttttcatgaggattggttttgccttccgaaaagatctag 26212783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 35455908 - 35455835
Alignment:
Q  62 attgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||| ||||||| |||||||| ||||||| ||| |||||||||  |||||  ||||||||||||||||| ||||    
T  35455908 attggttttgccgtccaaaaatgtctagcagcggagcttgttgcatgtttatcttctattcatgtgtaattaat 35455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 29526004 - 29525858
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt---nnnnnnngtgatttta 527  Q
    ||||||||||| ||| || ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||||||||          |||||||||    
T  29526004 gagatattcttgcatgaactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttattaactttaaaaaagagtgtgatttta 29525905  T
Q  528 attaaggaaatggaaacataaatggtgatg-gtggttcttgtcggtt 573  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  29525904 attaaggaaatggaaacataaatggtggtgtgtggttcttgtcggtt 29525858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 22589462 - 22589582
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  ||||||| || |||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| | | |||||    
T  22589462 atagcaatgtcatgtctcataggtctatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 22589561  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    || |||||| |||||| ||||    
T  22589562 ttttattcaagtgtaaataat 22589582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 39434619 - 39434513
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcg 142  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||   |   |||| ||||||||||||||||||||||||| |    
T  39434619 aatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgctag--cgcctcctattcatgtgtaagtaatattgatag 39434522  T
Q  143 taaatatta 151  Q
    |||||||||    
T  39434521 taaatatta 39434513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 430 - 570
Target Start/End: Complemental strand, 30233938 - 30233796
Alignment:
Q  430 tgagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgatttta 527  Q
    |||||||||||| ||| || ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||         |||||||||    
T  30233938 tgagatattcttgcatgaactctcacctaacacatcattcttacacccaaccaataaaa-aatgacacatgttattaactttaaaaaaagtgtgatttta 30233840  T
Q  528 attaaggaaatggaaacataaatggtgat-ggtggttcttgtcg 570  Q
    ||||| |||||| |||||||||||||| | ||||| ||||||||    
T  30233839 attaatgaaatgaaaacataaatggtggtgggtgggtcttgtcg 30233796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 38815275 - 38815159
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || ||||||||||| | |||||||| |||| |||||||||||||  |||| ||||||||||||| | | |||||    
T  38815275 atagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgcc 38815176  T
Q  114 ttctattcatgtgtaag 130  Q
    |||||||||||||||||    
T  38815175 ttctattcatgtgtaag 38815159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 18596759 - 18596845
Alignment:
Q  49 tgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| |||||||| ||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||| |||||| ||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataat 18596845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 430 - 554
Target Start/End: Original strand, 35162985 - 35163111
Alignment:
Q  430 tgagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgatttta 527  Q
    |||||||||||| ||| || ||||  | ||||||||||||||||| || ||||||||||  ||| |||||||||||||||||         |||||||||    
T  35162985 tgagatattcttgcatgaactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttattaactttaaaaaaagtgtgatttta 35163084  T
Q  528 attaaggaaatggaaacataaatggtg 554  Q
    |||||||||||||||||||||||||||    
T  35163085 attaaggaaatggaaacataaatggtg 35163111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 431 - 573
Target Start/End: Complemental strand, 41775078 - 41774932
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaa-tggcacatgttattaactttnnnnnnngtg--atttta 527  Q
    ||||||||||| ||| || ||||||| ||||||| ||| ||||||||||| ||||||| || || ||||||||||| |||||       |||  ||||||    
T  41775078 gagatattcttgcatgaactctcacccaacacatcatttttacatccaacaaataaaaaaaatgacacatgttatttactttaaaaaaagtgttatttta 41774979  T
Q  528 attaaggaaatggaaacataaatggtgatgg-tggttcttgtcggtt 573  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  41774978 attaaggaaatggaaacataaatggtggtggatggttcttgttggtt 41774932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 18804551 - 18804474
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||| ||||    
T  18804551 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttctattcaagtgtaaataat 18804474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 450 - 573
Target Start/End: Complemental strand, 9305348 - 9305223
Alignment:
Q  450 tctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt-nnnnnnngtgattttaattaaggaaatggaaacataa 548  Q
    ||||||| |||||||||||||||||  ||||||||||||  ||| |||||||||||||||||        ||||||||||||||||||||  ||||||||    
T  9305348 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttattaactttaaaaaagtgtgattttaattaaggaaataaaaacataa 9305249  T
Q  549 atggtgat-ggtggttcttgtcggtt 573  Q
    |||||| | ||||||||||| |||||    
T  9305248 atggtggtgggtggttcttggcggtt 9305223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 24320289 - 24320198
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||| | ||||||||||||||  ||||||||||||||||| | ||||||||||| ||||||| ||||||||| ||||||| ||||    
T  24320289 aatgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcctgtttgtcttctattcgtgtgtaattaat 24320198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 573
Target Start/End: Original strand, 36676334 - 36676389
Alignment:
Q  519 gtgattttaattaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36676334 gtgattttaattaaggaaatggaaacataaatggtgatgggtggttcttgtcggtt 36676389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 42659215 - 42659073
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcgcgc-agcttgttgtct 106  Q
    |||||| ||||||||  ||||||| ||| ||  || ||||||||||| | ||||||| |||||| |||||||||||||||| ||    | |||||||||     
T  42659215 gttatgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaaggtctaacggtataacttgttgtcc 42659116  T
Q  107 gtttgccttctattcatgtgtaagtaatattgatcgtaaatat 149  Q
    | |||||| |||||| |||||||||||||||||| ||||||||    
T  42659115 gcttgcctcctattcttgtgtaagtaatattgatagtaaatat 42659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 3187958 - 3187878
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtcta 88  Q
    |||||| ||||||||| ||||||||||| ||| || ||||||||||| | ||| |||| ||||||||||||||||||||||    
T  3187958 gttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtcta 3187878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 44337268 - 44337195
Alignment:
Q  67 ttttgccatccaaaaaggtctagcgcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgat 140  Q
    |||||||||||||||||||| ||||  ||||||||||   | |||||| |||||||||||||||||||||||||    
T  44337268 ttttgccatccaaaaaggtccagcggccagcttgttgctcgcttgcctcctattcatgtgtaagtaatattgat 44337195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 8882314 - 8882215
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||| | ||||||| ||||||||||| ||||| || || | |||||||||||||  |||||| ||||||||||||    
T  8882314 atgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaatgtttaacggcgcagcttgttgcatgtttgtcttctattcatg 8882215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 431 - 510
Target Start/End: Original strand, 36675639 - 36675718
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactt 510  Q
    ||||||||||| |||  ||||||||| || |||||||||||||| |||||||||||||  ||| ||||| ||||||||||    
T  36675639 gagatattcttgcatgcattctcacccaatacattattcttacacccaaccaataaaaatatgacacatattattaactt 36675718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 573
Target Start/End: Complemental strand, 27768937 - 27768883
Alignment:
Q  520 tgattttaattaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  27768937 tgattttaattaaggaaatggaaatataaatggtggtgggtggttcttgtcggtt 27768883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 25021969 - 25022052
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtg 126  Q
    ||||||||||| |  | ||||||||||  ||||||||||  ||||||| || |||||||||| |||||||||||||||||||||    
T  25021969 aatgttgtgtttacaatgattgattttatcatccaaaaaattctagcgacgtagcttgttgtttgtttgccttctattcatgtg 25022052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 5329739 - 5329797
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaagg 84  Q
    |||||||||| |||||| ||||||||||| | ||||||| |||||| ||||||||||||    
T  5329739 atgtctcctatgtctatcaatgttgtgtttatgaggattaattttgacatccaaaaagg 5329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 1187393 - 1187438
Alignment:
Q  89 gcgcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||    
T  1187393 gcgcgcagcttgttgtctgcttgccttctattcaagtgtaaataat 1187438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 37514198 - 37514113
Alignment:
Q  19 caatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttg 103  Q
    ||||| || ||||| || ||| || |||||||| |||| |||||||||| |||||| ||||||||||||| | |||||||||||||    
T  37514198 caatgttacgtctcttaggtccatgaatgttgtattcacgaggattgatcttgccacccaaaaaggtctaacggcgcagcttgttg 37514113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 12751032 - 12751092
Alignment:
Q  75 tccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||| ||||| ||||||||||||||| |||||| ||||||| |||||||| ||||    
T  12751032 tccaaaaaggcctagcagcgcagcttgttgtcagtttgctttctatttatgtgtaattaat 12751092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 24451101 - 24450995
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || ||||||||||||| || ||||| ||||||||||| ||||  |||||| ||||||||| ||||| ||||  |    
T  24451101 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgattg-ttttgccatcc-aaaatatctagcggcgcagcttattgtccgttttgc 24451004  T
Q  114 ttctattca 122  Q
    |||||||||    
T  24451003 ttctattca 24450995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Complemental strand, 29525777 - 29525734
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| |||||||||| |||||||||||||||| |||||||    
T  29525777 gaggtgtttgattttaattagttgggtgtaagaatgttgtgttg 29525734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 35163218 - 35163261
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||    
T  35163218 gaggtgtttgattttaattgattggatgtaagaatgatgtgttg 35163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 40223555 - 40223633
Alignment:
Q  45 atgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattca 122  Q
    |||||||||||| || ||||  |||||||||| ||||| |||||  | |||||||| ||||||||||| ||||||||||    
T  40223555 atgttgtgttcatgatgattagttttgccatcaaaaaatgtctaatggcgcagcttattgtctgtttgtcttctattca 40223633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 13232055 - 13232103
Alignment:
Q  91 gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgat 140  Q
    |||||||||||||| || |||| |||| ||||||||||||||||||||||    
T  13232055 gcgcagcttgttgt-tgcttgctttctcttcatgtgtaagtaatattgat 13232103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 26033679 - 26033740
Alignment:
Q  56 aagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttc 116  Q
    |||||||||| ||||| |||| |||||||  ||||| ||||||||||||| |||||||||||    
T  26033679 aagaggattggttttgtcatctaaaaaggattagcgacgcagcttgttgtttgtttgccttc 26033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 690
Target Start/End: Complemental strand, 27768802 - 27768765
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgat 690  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  27768802 gaggtgtttgattttaattggttggatgtaagaatgat 27768765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 696
Target Start/End: Complemental strand, 30233711 - 30233670
Alignment:
Q  655 ggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  30233711 ggtgtcagattttaattggttaggtgtaagaaagatgtgttg 30233670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 137
Target Start/End: Complemental strand, 27494299 - 27494169
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtct 106  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||||| | ||  |||| |||||||||||||||||||||| | ||||||||||||| ||    
T  27494299 gttatgtatagcaatgttatgtctcctaagtctatgaatattgtgtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgttgcct 27494200  T
Q  107 gtttgccttctattcatgtgtaagtaatatt 137  Q
    | |||||| |||||||| |||||||||||||    
T  27494199 gcttgcctcctattcatatgtaagtaatatt 27494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 4413203 - 4413312
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |   |||||||||||||| |    
T  4413203 atgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccacttgccttctattcaag 4413302  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  4413303 tgtaaataat 4413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 573
Target Start/End: Original strand, 18058769 - 18058914
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaactttnnnnnnngtg--attttaa 528  Q
    ||||||||||| ||| || ||||||| |||||||||||||||||    || |||||||  ||| |||||||||||||||||       |||  |||||||    
T  18058769 gagatattcttgcatgaactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttattaactttaaataaagtgtgattttaa 18058868  T
Q  529 ttaaggaaatggaaacataaatggtgat-ggtggttcttgtcggtt 573  Q
    |||||||||||||||||||||||||| | |||||||||||||||||    
T  18058869 ttaaggaaatggaaacataaatggtggtgggtggttcttgtcggtt 18058914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 28224971 - 28224846
Alignment:
Q  25 tatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcat 123  Q
    ||||||||||| ||| || ||||||||||| | || ||||  |||||||||||||||||||||||| ||||||||| ||| | | ||| || ||||||||    
T  28224971 tatgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgcttgtctcctattcat 28224872  T
Q  124 gtgtaagtaatattgatcgtaaatat 149  Q
     |||||||||||||||| ||||||||    
T  28224871 ttgtaagtaatattgatagtaaatat 28224846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 431 - 569
Target Start/End: Complemental strand, 39823031 - 39822891
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt--nnnnnnngtgattttaa 528  Q
    |||||||| || |||||| ||||||| ||||||| ||||||||| |||||||||||||  ||| ||||||||||||| |||         ||||||||||    
T  39823031 gagatattattgcatcaactctcacccaacacatcattcttacacccaaccaataaaaatatgacacatgttattaaatttaaaaaaagtgtgattttaa 39822932  T
Q  529 ttaaggaaatggaaacataaatggtgatggtggttcttgtc 569  Q
    ||||| |||||||||||||||||||| || | |||||||||    
T  39822931 ttaagaaaatggaaacataaatggtggtgatagttcttgtc 39822891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 15515302 - 15515393
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||||| |||||||| |||||||||||||||| ||||||| |||||| |||||| |||||||||||||| ||| |||||| ||||    
T  15515302 aatgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcctgtttgccttctactcaagtgtaaataat 15515393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 17344608 - 17344499
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||| | ||||||||||||| | ||||||||||||||| | ||||||||||||| | | |||||||||||||| |    
T  17344608 atgtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgccggcttgccttctattcaag 17344509  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  17344508 tgtaaataat 17344499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 9685541 - 9685649
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    |||||||||  |||||||||| ||| || |||||||||||||  | ||||| |||||||||||||||||||||||| ||||||||||||| | | |||||    
T  9685541 atagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 9685640  T
Q  114 ttctattca 122  Q
    || ||||||    
T  9685641 ttatattca 9685649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 20143123 - 20143179
Alignment:
Q  67 ttttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattca 122  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  20143123 ttttgccatccaaaaaggtctagcggcgcaacttgttgtctgtttgccttctattca 20143179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 431 - 568
Target Start/End: Original strand, 5737193 - 5737332
Alignment:
Q  431 gagatattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt-nnnnnnngtgattttaat 529  Q
    ||||||||||||||| || ||||| | ||||||| ||||||||| ||||| ||||||| | || ||  |||||||||||||        |||||||| ||    
T  5737193 gagatattcttacatgaactctcatccaacacatcattcttacacccaacaaataaaaaattgacatctgttattaactttaaaaaagagtgattttcat 5737292  T
Q  530 taaggaaatggaaacataaatggtgat-ggtggttcttgt 568  Q
    ||||||||||||||| ||||||||| | ||||||||||||    
T  5737293 taaggaaatggaaacgtaaatggtggtgggtggttcttgt 5737332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 3208413 - 3208490
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||| | | |||||||||||||| |||||| ||||    
T  3208413 gaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 3208490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 13413321 - 13413212
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||||| ||| || ||||||||||| | ||| |||| |||||||||||||||||| ||| | || |||||||||||| | ||| |||||||||| |    
T  13413321 atgtctcctaggtccatgaatgttgtgtttatgagaattggttttgccatccaaaaaggcctaacggctcagcttgttgtccgcttgtcttctattcaag 13413222  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  13413221 tgtaaataat 13413212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 30602427 - 30602350
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||||| | |  |||||||||||||||||||| ||||    
T  30602427 gaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaat 30602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 18745096 - 18745200
Alignment:
Q  31 tcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaa 129  Q
    ||||| |||||| ||||||||||| |  ||||||| |||||||||||||||||||||||| ||||||||| |||   | ||| |||||||||| ||||||    
T  18745096 tcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagcttattgctcgcttgtcttctattcaagtgtaa 18745195  T
Q  130 gtaat 134  Q
     ||||    
T  18745196 ataat 18745200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 41702209 - 41702133
Alignment:
Q  59 aggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||| |||||||||||||||||| |||| | |||||||||||| |   ||||||||||||||||||||||||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaat 41702133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 653 - 696
Target Start/End: Original strand, 18058989 - 18059032
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgttg 696  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  18058989 gaggtgtttgattttaattggttgggtgtaagaatgatgtgttg 18059032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 34250156 - 34250251
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaatattaa 152  Q
    ||||||| |||||| ||||||||||| ||||   |||||  |||||||| ||||||||  ||||||||||||||||||||||||  ||||||||||    
T  34250156 gaggattaattttgtcatccaaaaagatctaatagcgcaatttgttgtcggtttgcctcatattcatgtgtaagtaatattgatattaaatattaa 34250251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 653 - 695
Target Start/End: Complemental strand, 39822806 - 39822764
Alignment:
Q  653 gaggtgttagattttaattggttgggtgtaagaatgatgtgtt 695  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  39822806 gaggtgtttgattttaattggttgggtgtaagaatgatgtgtt 39822764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 10587144 - 10587201
Alignment:
Q  78 aaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||    
T  10587144 aaaaaggtctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaat 10587201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 27502350 - 27502269
Alignment:
Q  8 gttatgtatagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctag 89  Q
    |||||| ||||||||   ||||||||||  ||||| ||||||||||| | || |||||||||||| ||||||||||||||||    
T  27502350 gttatgcatagcaatatcatgtctcctagatctatgaatgttgtgtttacgaagattgattttgcaatccaaaaaggtctag 27502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 511
Target Start/End: Original strand, 25628873 - 25628950
Alignment:
Q  434 atattcttacatcaattctcacctaacacattattcttacatccaaccaataaaagaatggcacatgttattaacttt 511  Q
    |||||||| ||| || ||||||| ||||||||||| ||||| |||||||||||||  |||  |||| |||||||||||    
T  25628873 atattcttgcatgaactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattattaacttt 25628950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 41868045 - 41868153
Alignment:
Q  26 atgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatg 124  Q
    |||||||| | ||| || ||||||||||| | |||||||| |||||||| |||||||| |||||| ||||| ||||||| | | |||| ||||||||| |    
T  41868045 atgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaacttgttgcccgcttgctttctattcaag 41868143  T
Q  125 tgtaagtaat 134  Q
    ||||| ||||    
T  41868144 tgtaaataat 41868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 42122755 - 42122678
Alignment:
Q  58 gaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||| || |||||||||||||||| ||||||| ||||||||| ||||  | |||||||||||||| |||||| ||||    
T  42122755 gaggactggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttctattcaagtgtaaataat 42122678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 2626050 - 2626093
Alignment:
Q  91 gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||    
T  2626050 gcgcagcttgttgtccgcttgccttctattcatgtgtaattaat 2626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 38723997 - 38724055
Alignment:
Q  93 gcagcttgttgtctgtttgccttctattcatgtgtaagtaatattgatcgtaaatatta 151  Q
    |||||||||||   | |||||| ||||| ||||||||||||||||||| ||||||||||    
T  38723997 gcagcttgttgctcgcttgcctcctatttatgtgtaagtaatattgatagtaaatatta 38724055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 696
Target Start/End: Original strand, 39822972 - 39823005
Alignment:
Q  663 attttaattggttgggtgtaagaatgatgtgttg 696  Q
    ||||| ||||||||||||||||||||||||||||    
T  39822972 atttttattggttgggtgtaagaatgatgtgttg 39823005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 5277 - 5185
Alignment:
Q  43 aaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||| | | |||| ||||||||| |||||| ||||    
T  5277 aaatgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataat 5185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 103075 - 102967
Alignment:
Q  27 tgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgccttctattcatgt 125  Q
    ||||||||| ||| || ||||||||||| | |||||||| |||||||||||||||||||||||| ||||| ||||||| | | |||||||||||||| ||    
T  103075 tgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagt 102976  T
Q  126 gtaagtaat 134  Q
    |||| ||||    
T  102975 gtaaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 6843 - 6754
Alignment:
Q  41 ataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaa 129  Q
    ||||| |||||||| | ||| |||| ||||||||||||||||||||||||| |||||||||||| | | |||||||||||||| ||||||    
T  6843 ataaaagttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 33231 - 33111
Alignment:
Q  15 atagcaatgctatgtctcctacgtctataaatgttgtgttcaagaggattgattttgccatccaaaaaggtctagc-gcgcagcttgttgtctgtttgcc 113  Q
    ||||||||  ||||||||||| ||| || || || ||||| | |||||||||||||| ||||||||||||  | || | ||||||||||| ||| |||||    
T  33231 atagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcctgcttgcc 33132  T
Q  114 ttctattcatgtgtaagtaat 134  Q
    ||||||||| |||||| ||||    
T  33131 ttctattcaagtgtaaataat 33111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 16809 - 16856
Alignment:
Q  44 aatgttgtgttcaagaggattgattttgccatccaaaaaggtctagcg 91  Q
    |||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  16809 aatgttgtattcacgagaattgattttgccatccaaaaaggtctagcg 16856  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 47692 - 47766
Alignment:
Q  61 gattgattttgccatccaaaaaggtctagcg-cgcagcttgttgtctgtttgccttctattcatgtgtaagtaat 134  Q
    |||||||||| ||||| ||||| || ||||| | || ||||||||| ||||| |||||||||| |||||||||||    
T  47692 gattgattttaccatcgaaaaatgtttagcggcacaacttgttgtccgtttgtcttctattcacgtgtaagtaat 47766  T

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