View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713-Insertion-3 (Length: 830)
Name: NF5713-Insertion-3
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 606; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 8 - 673
Target Start/End: Original strand, 48657659 - 48658325
Alignment:
| Q |
8 |
tgttgtaatatgcacatcatgtgattattgagtcttacagcaacttatttttgctctttnnnnnnn-tgtataattgggataaagtccttaatataactt |
106 |
Q |
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| T |
48657659 |
tgttgtaatatgcacatcatgtgattattgattcttacagcaatttatttttgctctttaaaaaaaatgtataattgggataaagtccttaatataactt |
48657758 |
T |
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| Q |
107 |
taaaatttactcgcaggtgactcatttactattgtacgttggctttgatagtacctacttgcaagagggggttggccttgaaattcactaactcaatttc |
206 |
Q |
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| T |
48657759 |
taaaatttactcgcaggtgactcatttactattgtacgttggctttgatagtacctacttgcaagagggggttggccttgaaattcactaactcaatttc |
48657858 |
T |
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| Q |
207 |
cagccagacatgatgcataatgatgacatgtgaggactgaggattgttagcagggacccctctaaaatgacactccaagctttcttgaagatgtgtatag |
306 |
Q |
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| T |
48657859 |
ctgccagacatgatacataatgatgacatgtgaggactgaggattgttagcagggacccctctaaaatgacattccaagctttcttgaagatgtgtatag |
48657958 |
T |
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| Q |
307 |
tacatagaatggaggttgtgtcagaagaacacttggattagaatgggaattgaatctgatcataacggagaggttgtgtgcagtacatagaatggaggat |
406 |
Q |
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| T |
48657959 |
tacatagaatggaggttgtgtcagaagaacacttggattagaatgggaattgaatctgatcataacggagaggttgtgtgcagtacatagaatggaggat |
48658058 |
T |
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| Q |
407 |
gagtcaaaatgaatgtgtgaattacatccaacaagatttatatgctagtaaaacaataggtgtgctctcttttgcaacaatgacaatgaaattaatcgta |
506 |
Q |
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| T |
48658059 |
gagtcaaaatgaatgtgtgcattacatccaacaagatttatatgctagtaaaacaataggtgtgctctcttttgcaacaatgacaatgaaattaatcgta |
48658158 |
T |
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| Q |
507 |
ttaattggtgtcggtactttacttctcgtggactccatttaatttcccacggggaggttgggtgcagtagatagaatgaaggttgagtcgaagggcactt |
606 |
Q |
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| T |
48658159 |
ttaattggtgtcggtcctttacttctcgtggactccatttaatttcccacggggaggttgggtgcagtagatagaatgaaggttgagtcgaaggacactt |
48658258 |
T |
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| Q |
607 |
tgattggaaagaggctgattaccagggggaggatgtgtgcattacatagagtgtgcttttgttgctg |
673 |
Q |
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| T |
48658259 |
tgattggaaagaggctgattaccagggggaggatgtgtgcattacatagagtgtgcttttgttgctg |
48658325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 672 - 827
Target Start/End: Original strand, 48658773 - 48658928
Alignment:
| Q |
672 |
tgccaattttacgtacaaacttgctagtagattgcctaaagcggaaatgctagatagtaaggcgaaatttaaacgaaaaacaacgaacgaagttactatg |
771 |
Q |
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| T |
48658773 |
tgccaattttacgtacaaacttgctagtagattgcctaaagcggaaatgctagatagtaaggcaaaatttaaacgaaaaacaacgaacgaagttactatg |
48658872 |
T |
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| Q |
772 |
gatttgttattacatttttatttctatcccattactttatgaccactttactcttg |
827 |
Q |
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| T |
48658873 |
gatttgttattacatttttatttctatcccattactttatggccactttactcttg |
48658928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 48662214 - 48662276
Alignment:
| Q |
287 |
tttcttgaagatgtgtatagtacatagaatggaggttgtgtcagaagaacacttggattagaa |
349 |
Q |
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| T |
48662214 |
tttcttgaagctgtgtatagtacatagaatggaggttgcgccagaaggacacttggaatagaa |
48662276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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