View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713-Insertion-4 (Length: 795)
Name: NF5713-Insertion-4
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 312 - 795
Target Start/End: Complemental strand, 45164988 - 45164525
Alignment:
| Q |
312 |
tatgttcaacttgtgggatgactacaattcgatcttgcaaaacatgcttttagaaaagggtgaagagctttatgttgtattctaagtaaccgagtgaaaa |
411 |
Q |
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| T |
45164988 |
tatgttcaacttgtgggatgactacaattcgatcttgcaaaacatgcttttagaaaagggtgaagagctttatgttgtattctaagtaaccgagtgaaaa |
45164889 |
T |
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| Q |
412 |
ttagtctcacagtagatccaaaagattgaagtttgtgaaaatacttaataaagtcaatagatgcctgataagtataaaacttcctttacacttttaagaa |
511 |
Q |
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| T |
45164888 |
ttagtctcacagtagatcc------ttgaagtttgtgaaaatacttaataaagtcaatagatgcctgataagtataaaacttcctttacacttttaagaa |
45164795 |
T |
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| Q |
512 |
aacactttaattaaatttctaacataagaaattctatgtttattaaattactcttctcggggtgtttaggtagcgtacgtatttattaattttctctcgt |
611 |
Q |
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| T |
45164794 |
aaccctttaattaaatttctaacataagaaattctatgtttattaaattactcttctcggggtgtttaggtagcgtacgtatttattaattttctctcgt |
45164695 |
T |
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| Q |
612 |
gtttgtcnnnnnnnctctctaattttnnnnnnntaatactcttccaaagtattgctgatcaatacatggttttgttgagtgatacacatatcgtgaggac |
711 |
Q |
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| T |
45164694 |
gtttgtctttttttctctctaattttaaaaaaataatactcttccaaagtattgctgatcaatacatggttttgtt--------------tcgtgaggac |
45164609 |
T |
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| Q |
712 |
tacaagtcattctttgtttgtgtcacagctgtatgaaattaatggttggtagttcagcttgtgcacttcacttcacaatactat |
795 |
Q |
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| T |
45164608 |
tacaagtcattctttgtttgtgtcacagctggatgaaattaatggttgatagttcagcttgtgcacttcacttcacaatactat |
45164525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 45165314 - 45165012
Alignment:
| Q |
14 |
ttcatcctttcttctctcaaacactcatatgtctccnnnnnnnnttcatgcttaattgcataaaaccaattaagcatggaagtctgcataataaaaccaa |
113 |
Q |
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| T |
45165314 |
ttcatcctttcttctctcaaacactcatatgtctccaaaaaaatttcatgcttaattgcataaaatcaattaagcatggaagtctgcataataaaaccaa |
45165215 |
T |
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| Q |
114 |
aaccaaat--tac-tagtgctagtattttgtaacatggtgttttacgatggacgtataattaagccatgcatatatgtgtgtgaaaaaacatatattagg |
210 |
Q |
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| T |
45165214 |
aaccaaatactatatagtgctagtattttctaacatggtgttttacgatggacgtataattaagccatgcatatatgtgtgtgaaaaaacatatattagg |
45165115 |
T |
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| Q |
211 |
agatatcaactatttaaatgagtttttgtatcgaaaagctattctatacctttctagctagtggggcattcctagcaactaaaagacaaacttatgggta |
310 |
Q |
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| T |
45165114 |
agatatcaactatttaaatgagtttttgtatcgaaaagctattctatacctttctagctagtggggcattactagcaactaaaagacaaacttatgggta |
45165015 |
T |
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| Q |
311 |
tta |
313 |
Q |
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||| |
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| T |
45165014 |
tta |
45165012 |
T |
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