View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5713-Insertion-5 (Length: 706)

Name: NF5713-Insertion-5
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5713-Insertion-5
NF5713-Insertion-5
[»] chr3 (21 HSPs)
chr3 (74-358)||(53741222-53741503)
chr3 (160-290)||(39430255-39430387)
chr3 (157-290)||(47006591-47006726)
chr3 (161-290)||(18029983-18030114)
chr3 (161-290)||(33791474-33791605)
chr3 (161-290)||(47849959-47850090)
chr3 (218-287)||(25134181-25134250)
chr3 (162-261)||(37919182-37919283)
chr3 (196-290)||(17587051-17587147)
chr3 (170-278)||(25096289-25096398)
chr3 (219-290)||(27117956-27118027)
chr3 (173-288)||(19961131-19961247)
chr3 (196-270)||(4539871-4539947)
chr3 (222-281)||(25102079-25102137)
chr3 (179-290)||(13637885-13637998)
chr3 (222-288)||(26040814-26040880)
chr3 (8-46)||(53741172-53741210)
chr3 (74-106)||(11042890-11042922)
chr3 (222-289)||(35306617-35306684)
chr3 (186-262)||(48192627-48192705)
chr3 (170-290)||(51325516-51325638)
[»] chr7 (10 HSPs)
chr7 (157-290)||(32786785-32786920)
chr7 (157-288)||(26081004-26081137)
chr7 (157-288)||(26104791-26104924)
chr7 (161-271)||(28337218-28337330)
chr7 (161-290)||(45837803-45837934)
chr7 (218-289)||(34964054-34964125)
chr7 (160-296)||(31054158-31054300)
chr7 (161-244)||(39837436-39837521)
chr7 (218-288)||(24330976-24331050)
chr7 (234-290)||(7907449-7907504)
[»] chr8 (22 HSPs)
chr8 (161-290)||(31313302-31313433)
chr8 (157-290)||(6530301-6530436)
chr8 (191-287)||(40505319-40505417)
chr8 (167-266)||(15067591-15067692)
chr8 (159-244)||(36680141-36680226)
chr8 (162-287)||(8769034-8769161)
chr8 (186-290)||(39699626-39699732)
chr8 (218-288)||(5493380-5493450)
chr8 (160-290)||(42685705-42685836)
chr8 (218-287)||(45244677-45244746)
chr8 (178-250)||(7774631-7774705)
chr8 (178-250)||(7791278-7791352)
chr8 (178-250)||(7811862-7811936)
chr8 (186-290)||(8867177-8867283)
chr8 (218-301)||(26014374-26014457)
chr8 (232-287)||(41602403-41602458)
chr8 (196-287)||(8114374-8114467)
chr8 (188-271)||(35865146-35865231)
chr8 (220-290)||(39699873-39699943)
chr8 (162-288)||(21372440-21372568)
chr8 (161-269)||(34576704-34576815)
chr8 (161-277)||(13948954-13949072)
[»] chr4 (21 HSPs)
chr4 (159-289)||(27918369-27918501)
chr4 (161-289)||(36989829-36989960)
chr4 (161-290)||(50297672-50297803)
chr4 (188-290)||(42051174-42051278)
chr4 (175-287)||(14138973-14139087)
chr4 (158-261)||(40311710-40311815)
chr4 (158-261)||(40321786-40321891)
chr4 (173-287)||(1008943-1009059)
chr4 (159-289)||(24940627-24940758)
chr4 (164-290)||(28675723-28675851)
chr4 (230-290)||(22019384-22019444)
chr4 (161-289)||(564146-564276)
chr4 (179-286)||(45249943-45250052)
chr4 (196-290)||(1961605-1961701)
chr4 (161-242)||(34936387-34936470)
chr4 (157-216)||(29508735-29508794)
chr4 (218-281)||(30033612-30033674)
chr4 (196-286)||(36937485-36937578)
chr4 (233-290)||(29508637-29508694)
chr4 (198-288)||(54997775-54997867)
chr4 (73-105)||(37861320-37861352)
[»] chr2 (23 HSPs)
chr2 (157-290)||(14275751-14275885)
chr2 (161-290)||(20061090-20061221)
chr2 (161-290)||(39420228-39420359)
chr2 (161-281)||(32294545-32294667)
chr2 (196-290)||(25626319-25626415)
chr2 (198-290)||(37230556-37230650)
chr2 (169-288)||(44068825-44068946)
chr2 (157-287)||(39364420-39364552)
chr2 (169-290)||(25626468-25626591)
chr2 (196-290)||(409893-409990)
chr2 (196-263)||(30549081-30549150)
chr2 (161-232)||(36528400-36528473)
chr2 (196-289)||(15079822-15079919)
chr2 (161-288)||(2889103-2889232)
chr2 (157-264)||(9950290-9950399)
chr2 (169-244)||(13349704-13349781)
chr2 (170-244)||(41890030-41890106)
chr2 (157-290)||(7743756-7743891)
chr2 (218-263)||(7061546-7061591)
chr2 (161-206)||(36278336-36278381)
chr2 (253-290)||(36528341-36528378)
chr2 (218-290)||(3348291-3348363)
chr2 (161-217)||(36285035-36285091)
[»] chr1 (17 HSPs)
chr1 (157-288)||(1035565-1035698)
chr1 (161-290)||(11017977-11018108)
chr1 (157-290)||(16394820-16394955)
chr1 (159-214)||(14758782-14758837)
chr1 (169-281)||(41884662-41884776)
chr1 (173-290)||(31262553-31262673)
chr1 (186-288)||(31635438-31635542)
chr1 (160-288)||(28490533-28490662)
chr1 (161-288)||(5799774-5799903)
chr1 (197-287)||(29033009-29033101)
chr1 (161-295)||(26952047-26952179)
chr1 (232-290)||(8644801-8644859)
chr1 (218-277)||(16583163-16583222)
chr1 (196-259)||(37316644-37316709)
chr1 (218-295)||(25366725-25366802)
chr1 (218-262)||(950079-950123)
chr1 (175-264)||(42066645-42066736)
[»] chr6 (12 HSPs)
chr6 (160-288)||(30249141-30249271)
chr6 (189-290)||(30438430-30438533)
chr6 (160-290)||(3787423-3787555)
chr6 (161-287)||(6469585-6469713)
chr6 (160-288)||(11659252-11659382)
chr6 (160-254)||(1065619-1065715)
chr6 (169-263)||(2831380-2831476)
chr6 (188-266)||(29285988-29286068)
chr6 (161-256)||(8504497-8504594)
chr6 (160-217)||(5849989-5850046)
chr6 (222-290)||(14215165-14215233)
chr6 (247-287)||(35033490-35033529)
[»] chr5 (14 HSPs)
chr5 (160-263)||(10523677-10523782)
chr5 (161-271)||(43340293-43340405)
chr5 (157-289)||(26105005-26105139)
chr5 (196-288)||(41144651-41144745)
chr5 (165-295)||(14547813-14547945)
chr5 (159-218)||(4164398-4164457)
chr5 (157-244)||(29557513-29557602)
chr5 (187-271)||(967577-967664)
chr5 (159-263)||(554321-554427)
chr5 (222-290)||(2987503-2987570)
chr5 (222-290)||(40845785-40845853)
chr5 (169-288)||(24519443-24519565)
chr5 (232-269)||(12000107-12000144)
chr5 (157-218)||(40044832-40044893)
[»] scaffold0116 (2 HSPs)
scaffold0116 (163-290)||(6040-6173)
scaffold0116 (173-262)||(3009-3100)
[»] scaffold0542 (1 HSPs)
scaffold0542 (188-290)||(4510-4614)
[»] scaffold0482 (1 HSPs)
scaffold0482 (178-250)||(561-635)
[»] scaffold0127 (1 HSPs)
scaffold0127 (160-238)||(13078-13158)
[»] scaffold0328 (1 HSPs)
scaffold0328 (161-261)||(12431-12533)
[»] scaffold0129 (1 HSPs)
scaffold0129 (73-105)||(37684-37716)
[»] scaffold0003 (1 HSPs)
scaffold0003 (246-290)||(322008-322052)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 74 - 358
Target Start/End: Original strand, 53741222 - 53741503
Alignment:
Q  74 tatttaaagggtcatgttaacttgtacccttattgttaacttgtgtcctaagggctcaagttatgtgccc-aaaggcacaagtt-----acccaaaaaga 167  Q
    |||||||||||||||| |||||||| |||||||||||||||||| |||||||| | |||||||||||||| || ||||||||||     ||||||| |||    
T  53741222 tatttaaagggtcatgctaacttgtgcccttattgttaacttgt-tcctaaggacacaagttatgtgccctaagggcacaagttaaacaacccaaagaga 53741320  T
Q  168 gcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacatgtgcct 265  Q
    |||||| ||||||  || ||   ||||||||||||||||||| |||||||   |||||||||||| ||||||||||||| || ||| |||||||||        
T  53741321 gcaactatgtattaaaaaac---atatgttaacttttaagaagttgaatgtatgacttttgatacgtatatttctataatgaattctttaacatgt---- 53741413  T
Q  266 ttgaggacacaagttagcatttgccctaaatatggatggatcatatgagaactaatcttttatcggactttca-tggatgctaactgtgtcgaa 358  Q
        | |||||||||||||||||||||||||||||| ||||| | ||| || ||||||||| || | |||||| ||||||||||||| ||||||    
T  53741414 ----gtacacaagttagcatttgccctaaatatggaaggatcgtttgataagtaatcttttctcaggctttcattggatgctaactgcgtcgaa 53741503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 39430387 - 39430255
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||| |||| |||| |||  |||||||||||||||| ||||||||| |||||| ||||     
T  39430387 caaaaagagcaactttgcattggaaaacataatattttaactttttagaagttgactgcacgacttttgatacatatgtttctataatgagttctttaag 39430288  T
Q  258 atgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||| ||| |||||| || |||||||||||||||    
T  39430287 atgcgcccttgagggcataagttagcatttgcc 39430255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 47006726 - 47006591
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||| |||||||||| ||||||| |||||| || |||| ||||||||| ||||||||  |||||||||| |  ||||||||||||  ||||||||    
T  47006726 acccaaaaaaagcaactttgcattggaaaacataacattttaaattttaagaagttgaatgcacgacttttgatgcgaatatttctataaaaagttcctt 47006627  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||| |||||| ||||||||| ||||||||    
T  47006626 aacatgtgcccttgagggcacaagttaacatttgcc 47006591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 18030114 - 18029983
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| ||||||| ||||||| | ||||||| || |||||||||||||||||||  ||||||||  ||||||||||||| ||   ||||||||||||    
T  18030114 aaaaagagtaactttgcattggaaaatataatattttgacttttaagaaattgaatgcacgacttttcgtacatatatttctttattaagttccttaaca 18030015  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||| || |||||| ||||||||    
T  18030014 tgtgcccttgagggcataagttaacatttgcc 18029983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 33791605 - 33791474
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| ||||||  ||||||| ||||||||| ||||||||||| || |||||||  |||| |||||||| ||||||| || || || ||||||||||    
T  33791605 aaaaagagtaactttacattggaaaacataatattttaacttttaaaaagttgaatgtacgacatttgatacgtatatttttacaatgaattccttaaca 33791506  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    | || | |||||||||||||||||||||||||    
T  33791505 tatgtcgttgaggacacaagttagcatttgcc 33791474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 47849959 - 47850090
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    ||||| |||||||||| |||| || | ||||||| |||| |||||| || | ||||||  || |||||||| |||||||||||||| |||||||||||||    
T  47849959 aaaaaaagcaactttgcattgaaaaatataatattttaatttttaaaaagtcgaatgcatgaattttgatagatatatttctataatgagttccttaaca 47850058  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||| | |||||||||||| ||| ||||||||    
T  47850059 tgtgtccttgaggacacaaattaacatttgcc 47850090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 25134181 - 25134250
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||| |||||    
T  25134181 cgacttttgatacatatatttctataatgagttccttaacatgtgtctttgagagcacaagttaacattt 25134250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 37919283 - 37919182
Alignment:
Q  162 aaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacat 259  Q
    |||||| |||||||  ||||||| ||||||||||| |||||||||||| |||||||  | | ||||||||| ||||||| ||||| ||||| ||||||||    
T  37919283 aaaagaacaactttacattggaaaacataatatgtcaacttttaagaagttgaatgcacaatttttgatacgtatatttatataatgagtttcttaacat 37919184  T
Q  260 gt 261  Q
    ||    
T  37919183 gt 37919182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 17587147 - 17587051
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||||  ||||||||  |||||||||||| ||| ||||||| || ||||| |||||||||||| |||||| |||||||||  |||||||    
T  17587147 ttaacttttaagatgttgaatgcacgacttttgatacgtatttttctattacaagttcattaacatgtgcccttgagggcacaagttaatatttgcc 17587051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 25096398 - 25096289
Alignment:
Q  170 aactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgccttt 267  Q
    ||||||||||| ||| | |||| || |||| ||||||||| |||||||   || |||| || | ||||||||||||| ||||||||||||||||||||||    
T  25096398 aactttgtattagaaaatataacattttaa-ttttaagaagttgaatgtatgattttttatgcgtatatttctataatgagttccttaacatgtgccttt 25096300  T
Q  268 gaggacacaag 278  Q
    |||| ||||||    
T  25096299 gagggcacaag 25096289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 27117956 - 27118027
Alignment:
Q  219 gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||| |||||||||||| || || |||||||| |||||||||| |||||| |||| |||||||||||||    
T  27117956 gacttttaatacatatatttttacaatgagttcctcaacatgtgcccttgagggcacacgttagcatttgcc 27118027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 19961247 - 19961131
Alignment:
Q  173 tttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaacatgtgcctttgag 270  Q
    |||||||||||| ||||||||| ||||||| || ||| |||||| |   ||||||||||| |||||||||||||  |||||||||||||||  | || ||    
T  19961247 tttgtattggaaaacataatattttaacttcta-gaagttgaatacacaacttttgatacgtatatttctataattagttccttaacatgtatccttcag 19961149  T
Q  271 gacacaagttagcatttg 288  Q
    | ||||||||| ||||||    
T  19961148 ggcacaagttatcatttg 19961131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 4539947 - 4539871
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgag 270  Q
    |||||||||||||| |||| |||  || |||| |||||||||||| ||||| ||||| |||||||||||||||||||    
T  4539947 ttaacttttaagaagttgattgcacgatttttaatacatatatttttataatgagtttcttaacatgtgcctttgag 4539871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 25102079 - 25102137
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagtta 281  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| |||||| |||||||||    
T  25102079 ttttgatacatatatttctataatgag-tccttaacatatgcccttgagggcacaagtta 25102137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 13637998 - 13637885
Alignment:
Q  179 ttggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacaca 276  Q
    |||||| |||||| || |||| ||||||||| ||||||||  || ||||||| | ||||||| ||||| || || |||||||||||   |||||| || |    
T  13637998 ttggaaaacataacattttaatttttaagaatttgaatgcacgaattttgatgcgtatatttttataatgactttcttaacatgtgtaattgagggcata 13637899  T
Q  277 agttagcatttgcc 290  Q
    ||||||||||||||    
T  13637898 agttagcatttgcc 13637885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 26040880 - 26040814
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttg 288  Q
    ||||||||| |||||||||||||||||||||||||| |||| | |||||  ||||| ||| ||||||    
T  26040880 ttttgatacgtatatttctataacgagttccttaacgtgtgtcattgagagcacaaattaacatttg 26040814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 53741172 - 53741210
Alignment:
Q  8 agaaattgatatggtaaaacttcaattacttgcctgtaa 46  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  53741172 agaaattgatgtggtaaaacttcaattacttgcctgtaa 53741210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 11042922 - 11042890
Alignment:
Q  74 tatttaaagggtcatgttaacttgtacccttat 106  Q
    |||||||||||||||||||||||||||||||||    
T  11042922 tatttaaagggtcatgttaacttgtacccttat 11042890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 35306617 - 35306684
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgc 289  Q
    ||||||||  ||||||||||||| |||||  ||||||| |||| |||||| ||||||||| |||||||    
T  35306617 ttttgataagtatatttctataatgagtttgttaacatatgcccttgagggcacaagttaacatttgc 35306684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 48192627 - 48192705
Alignment:
Q  186 acataatatgttaacttttaagaaattgaat--gcgacttttgatacatatatttctataacgagttccttaacatgtg 262  Q
    ||||||||||| |||||||||||| ||||||  |||| |||| |||  |||||||||||||  |||| |||||||||||    
T  48192627 acataatatgtcaacttttaagaagttgaatgcgcgatttttaataagtatatttctataataagtttcttaacatgtg 48192705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 51325516 - 51325638
Alignment:
Q  170 aactttgtattggaatacataatatgttaacttttaagaaattgaat--gcgacttttgatacatatatttctataacgagttccttaacatgtgccttt 267  Q
    ||||||||||||||||| |||| || |||| ||||||||| || |||   |||||||||||  |||||||| ||||| |||||  ||||| ||||| |||    
T  51325516 aactttgtattggaatatataacattttaatttttaagaagtttaatacacgacttttgatgaatatatttttataatgagttttttaacgtgtgctttt 51325615  T
Q  268 gaggacacaagttagcatttgcc 290  Q
    || |  |||||||| ||| ||||    
T  51325616 gaaggaacaagttaacatgtgcc 51325638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 32786920 - 32786785
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  |||||||||||| ||||||| ||||| |||||||||    
T  32786920 acccgaaaagagcaactttgtattggaaaacataatattttaacttttaagaagttgaatgcacgacttttgatacgtatatttatataatgagttcctt 32786821  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||| |||||| ||||||||||||||||||    
T  32786820 aacatgtgcccttgagggcacaagttagcatttgcc 32786785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 157 - 288
Target Start/End: Original strand, 26081004 - 26081137
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||||| ||| |||| |||| || ||||||||| |||||||||||||| ||||  ||   | |||| |||  ||||||||||||| |||||||||    
T  26081004 acccaaaaagaacaattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttcctt 26081103  T
Q  255 aacatgtgcctttgaggacacaagttagcatttg 288  Q
    || ||||||| |||||||||||||||||||||||    
T  26081104 aatatgtgccattgaggacacaagttagcatttg 26081137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 157 - 288
Target Start/End: Original strand, 26104791 - 26104924
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||||| ||| |||| |||| || ||||||||| |||||||||||||| ||||  ||   | |||| |||  ||||||||||||| |||||||||    
T  26104791 acccaaaaagaacaattttgcattgtaaaacataatattttaacttttaagaagttgacggcacaatttttaatatgtatatttctataatgagttcctt 26104890  T
Q  255 aacatgtgcctttgaggacacaagttagcatttg 288  Q
    || ||||||| |||||||||||||||||||||||    
T  26104891 aatatgtgccattgaggacacaagttagcatttg 26104924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 28337330 - 28337218
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| |||| || | ||| ||| |||||||||||||| |||| |||  || |||| |||||||||||||||||| ||||| |||||||    
T  28337330 aaaaagagcaactttgcattgaaaaatatagtattttaacttttaagaagttgattgcacgattttttatacatatatttctataatgagtttcttaaca 28337231  T
Q  259 tgtgcctttgagg 271  Q
    |||||| ||||||    
T  28337230 tgtgcccttgagg 28337218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 45837934 - 45837803
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| ||||||| ||| ||||||  ||||||||| || |||||||  || | |||||||  | ||||||||||| ||||  |||||||    
T  45837934 aaaaagagcaactttgcattggaaaacacaatatgacaacttttaataagttgaatgcacgccgtttgatatgtgtatttctataatgagtatcttaaca 45837835  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| ||| || ||||| ||||||||||||    
T  45837834 tgtgcccttgtgggcacaaattagcatttgcc 45837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 34964054 - 34964125
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgc 289  Q
    |||||||||||| |||||||||||||| || ||| ||||||||  || || | |||||||||||||||||||    
T  34964054 cgacttttgataaatatatttctataatgaattctttaacatgcacccttaaagacacaagttagcatttgc 34964125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 296
Target Start/End: Complemental strand, 31054300 - 31054158
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgactttt----gatacatatatttctataacgagttcct 253  Q
    |||||||| |||||||  ||||||  | ||||||| |||||||||||||| |||||||  ||||||||     |||||||||||||||||| || || ||    
T  31054300 caaaaagaacaactttacattggagaatataatattttaacttttaagaagttgaatgtacgacttttaatacatacatatatttctataatgaatttct 31054201  T
Q  254 taacatgtgcctttgaggacacaagttagcatttgccctaaat 296  Q
    |||||| |  |||| ||| |  |||||||||||| || |||||    
T  31054200 taacatatatctttaagggcgtaagttagcatttcccttaaat 31054158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 39837436 - 39837521
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataa 244  Q
    ||||| |||||||||| | || || | |||||| || |||||||||||| |||||||  ||||||||||||| | |||||||||||    
T  39837436 aaaaatagcaactttgcactgaaaaatataataggtcaacttttaagaagttgaatgcacgacttttgatacgtgtatttctataa 39837521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 24331050 - 24330976
Alignment:
Q  218 cgacttttgatacatatatttctataacga----gttccttaacatgtgcctttgaggacacaagttagcatttg 288  Q
    ||||||||||||| ||||||| ||||| ||    ||| ||||| ||||| ||||||||| |||||||||||||||    
T  24331050 cgacttttgatacgtatatttttataatgatcaagttacttaatatgtgtctttgaggatacaagttagcatttg 24330976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 7907504 - 7907449
Alignment:
Q  234 tatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||| ||||  ||||||||||||| |||||| ||||||||| ||||||||    
T  7907504 tatttctataatgagtatcttaacatgtgcc-ttgagggcacaagttaacatttgcc 7907449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 9e-38; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 31313433 - 31313302
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||| || ||||||||  |||||||||||| ||||||||||||| || ||||||||||    
T  31313433 aaaaagagcaactttgcattggaaaacataatatgtcaacttttaaaaagttgaatgcatgacttttgatacgtatatttctataatgacttccttaaca 31313334  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||| ||||||||||||||||||    
T  31313333 tgtgcccttgagggcacaagttagcatttgcc 31313302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 6530436 - 6530301
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttcctt 254  Q
    |||||||||||||||||||| ||||||| ||||||||| || ||||||||||| |||||||  |||||||| || | ||||||||| |||  ||||||||    
T  6530436 acccaaaaagagcaactttgcattggaaaacataatatattgacttttaagaagttgaatgcacgactttttatgcttatatttctttaataagttcctt 6530337  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||| |||||| ||||||||||||||||||    
T  6530336 aacatgtgcccttgagggcacaagttagcatttgcc 6530301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 40505319 - 40505417
Alignment:
Q  191 atatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    |||| |||||||||||||| ||||||||  ||||||||||| ||||||||  |||| |||||||||||||||| |||||||||||||||||||||||||    
T  40505319 atattttaacttttaagaagttgaatgcacgacttttgatatatatattttcataatgagttccttaacatgtacctttgaggacacaagttagcattt 40505417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 15067692 - 15067591
Alignment:
Q  167 agcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcc 264  Q
    |||||||||| ||||||| |||| |||  ||||||||| ||||||||| |||  |||||||||||| | |||||||||||||||||||||||| ||||||    
T  15067692 agcaactttgcattggaaaacatcataatttaacttttgagaaattgactgcacgacttttgatacgtttatttctataacgagttccttaacttgtgcc 15067593  T
Q  265 tt 266  Q
    ||    
T  15067592 tt 15067591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 36680141 - 36680226
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcgacttttgatacatatatttctataa 244  Q
    ||||||||||||| |||| ||||||| ||||||||||| ||| |||||||  ||||||||||| |||||||| |||||||||||||    
T  36680141 ccaaaaagagcaattttgcattggaaaacataatatgtcaacatttaagatgttgaatgcgacatttgatacgtatatttctataa 36680226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 8769034 - 8769161
Alignment:
Q  162 aaaagagcaactttgtattggaatacataatatgttaac-ttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||| ||||| || | || |||| ||||| |||||||||  |||||||   |||||| |||||||||||||||||| ||||||||||| |    
T  8769034 aaaagagcaactttatattgaaa-atatgatattttaaccttttaagaatatgaatgcacaactttttatacatatatttctataatgagttccttaaga 8769132  T
Q  259 tgtgcctttgaggacacaagttagcattt 287  Q
    |||||| |||||| ||| |||||||||||    
T  8769133 tgtgcccttgaggccaccagttagcattt 8769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 39699626 - 39699732
Alignment:
Q  186 acataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagc 283  Q
    ||||||||  ||||||||||| || || |||||  |||||||||||| ||||||| |||||  |  ||||||||||||| | |||| |||||||||||||    
T  39699626 acataatactttaacttttaaaaagttaaatgcacgacttttgatacgtatatttttataataaactccttaacatgtgtccttgaagacacaagttagc 39699725  T
Q  284 atttgcc 290  Q
    |||||||    
T  39699726 atttgcc 39699732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 5493380 - 5493450
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttg 288  Q
    ||||||||||| | | ||||||||||| || || ||||||||||||| |||||| ||||||||||||||||    
T  5493380 cgacttttgatgcgtgtatttctataatgactttcttaacatgtgcccttgagggcacaagttagcatttg 5493450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 42685836 - 42685705
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||| ||| | |||| |||| || ||||||||| ||||||||| |||| |||| | |  ||||||||||||| ||||||||||||  | |||||| ||    
T  42685836 caaaaaaagctattttgcattgaaaaacataatattttaactttttagaagttgactacacgacttttgatacacatatttctataataaattcctt-ac 42685738  T
Q  258 atgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||  ||| ||||| ||||||||||||    
T  42685737 atgtgccttcaagggcacaaattagcatttgcc 42685705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 45244746 - 45244677
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    |||||||| |||| ||||||||||||| |||||| |||||||||| ||||  |||||||||||| |||||    
T  45244746 cgacttttaatacgtatatttctataatgagttcattaacatgtgtctttagggacacaagttaacattt 45244677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 7774705 - 7774631
Alignment:
Q  178 attggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagtt 250  Q
    ||||||| |||||| || ||||  |||||||| ||||||||  |||||||||||||||||||||||||| |||||    
T  7774705 attggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7774631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 7791352 - 7791278
Alignment:
Q  178 attggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagtt 250  Q
    ||||||| |||||| || ||||  |||||||| ||||||||  |||||||||||||||||||||||||| |||||    
T  7791352 attggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7791278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 7811936 - 7811862
Alignment:
Q  178 attggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagtt 250  Q
    ||||||| |||||| || ||||  |||||||| ||||||||  |||||||||||||||||||||||||| |||||    
T  7811936 attggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 7811862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 8867283 - 8867177
Alignment:
Q  186 acataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagc 283  Q
    |||||| || |||| ||||||||| ||||||||   ||||||||| | ||||||||||||| |||||| |||||||||||| || | | ||||||||| |    
T  8867283 acataacattttaatttttaagaagttgaatgcacaacttttgatgcgtatatttctataatgagttctttaacatgtgcccttcaaggcacaagttaac 8867184  T
Q  284 atttgcc 290  Q
    || ||||    
T  8867183 atgtgcc 8867177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 26014457 - 26014374
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgccctaaatatgga 301  Q
    |||||||||||||||||||||  |||| ||||| ||||| ||||| | |||| |||| ||||||| ||||||| |||| |||||    
T  26014457 cgacttttgatacatatattttaataatgagtttcttaatatgtgtcattgaagacataagttagtatttgccataaacatgga 26014374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 41602458 - 41602403
Alignment:
Q  232 tatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    ||||||||||||| || |||||||||||||||| |||||  |||||||||||||||    
T  41602458 tatatttctataatgaattccttaacatgtgccgttgagagcacaagttagcattt 41602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 287
Target Start/End: Original strand, 8114374 - 8114467
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    |||| |||||| ||||||| |||  ||||||| |||||||||||| ||||| ||||| ||||||||||||  ||||||| | |||||| |||||    
T  8114374 ttaatttttaaaaaattgactgcacgacttttaatacatatatttttataatgagtttcttaacatgtgctcttgaggatataagttaacattt 8114467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 35865231 - 35865146
Alignment:
Q  188 ataatatgttaacttttaagaaattgaat--gcgacttttgatacatatatttctataacgagttccttaacatgtgcctttgagg 271  Q
    ||||||| ||||||||||| || |||| |  |||||||||||||  |||||||||||||  ||||||||||||| |||| ||||||    
T  35865231 ataatattttaacttttaaaaagttgactacgcgacttttgatatgtatatttctataataagttccttaacatatgcccttgagg 35865146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 39699873 - 39699943
Alignment:
Q  220 acttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||| ||||||| |||||  || |||||||||| |||| |||  ||||||||||||||||||||    
T  39699873 acttttgatacgtatatttttataataagctccttaacatctgcccttggagacacaagttagcatttgcc 39699943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 21372568 - 21372440
Alignment:
Q  162 aaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacat 259  Q
    ||||||| || |||| ||||||| |||||| |  ||||||||||| || |||||| |  ||||||| || | |||||||||||||  |||||||||||||    
T  21372568 aaaagagtaaatttgcattggaaaacataacactttaacttttaaaaagttgaatacacgactttttatgcgtatatttctataataagttccttaacat 21372469  T
Q  260 gtgcctttgaggacacaagttagcatttg 288  Q
     | || |||||| ||||| |||| |||||    
T  21372468 attcccttgagggcacaaattagtatttg 21372440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 34576815 - 34576704
Alignment:
Q  161 aaaaagagcaactttgtattgg-aatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaac 257  Q
    ||||||||||| |||  ||||| || |||||||||||||| ||||||||| |||||||  ||||||||||| |  ||||||| ||||  |||| |||| |    
T  34576815 aaaaagagcaaatttacattgggaaaacataatatgttaatttttaagaagttgaatgcacgacttttgatccgcatatttccataataagtttcttagc 34576716  T
Q  258 atgtgcctttga 269  Q
    ||||||| ||||    
T  34576715 atgtgcccttga 34576704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 13949072 - 13948954
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaactttt-aagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||| |||||||||| ||||  || |||| |||  ||||||||| |||||||||| | |  |||||||| ||| |||||||||||||  |||| ||||||    
T  13949072 aaaatgagcaactttatattaaaaaacatgataatttaactttttaagaaattgactacacgacttttg-tacgtatatttctataataagtttcttaac 13948974  T
Q  258 atgtgcctttgaggacacaa 277  Q
    ||||||| |||| |||||||    
T  13948973 atgtgccattgaagacacaa 13948954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 6e-36; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 159 - 289
Target Start/End: Original strand, 27918369 - 27918501
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaa 256  Q
    ||||||||||||| |||| |||| || | ||||||| |||||||||||||| || |||||  ||||||||||||||||||||||||||||||||||||||    
T  27918369 ccaaaaagagcaattttgcattgaaaaatataatattttaacttttaagaagtttaatgcacgacttttgatacatatatttctataacgagttccttaa 27918468  T
Q  257 catgtgcctttgaggacacaagttagcatttgc 289  Q
    |||||| | |||||| |||||||||||||||||    
T  27918469 catgtgtccttgagggcacaagttagcatttgc 27918501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 289
Target Start/End: Complemental strand, 36989960 - 36989829
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgtt-aacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||| ||||||||| ||||||| ||||||||| || |||||||||||| ||||||||  ||||||| |||  ||||||| ||||| ||||| |||||     
T  36989960 aaaaagtgcaactttgcattggaaaacataatattttgaacttttaagaagttgaatgcacgacttttaatatgtatatttttataatgagtttcttaat 36989861  T
Q  258 atgtgcctttgaggacacaagttagcatttgc 289  Q
    ||||||| |||||||||||||||| |||||||    
T  36989860 atgtgcccttgaggacacaagttaacatttgc 36989829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 50297672 - 50297803
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| || |||| ||||||| ||| ||||||  |||||||||||| ||||||||  | |||||||||  | ||||||||||| ||||  |||||||    
T  50297672 aaaaagagtaattttgcattggaaaacacaatatgacaacttttaagaagttgaatgcacgccttttgatatgtgtatttctataatgagtatcttaaca 50297771  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||| ||||||||||||||||||    
T  50297772 tgtgcccttgagggcacaagttagcatttgcc 50297803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 42051174 - 42051278
Alignment:
Q  188 ataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcat 285  Q
    ||||||| ||||||||||| || ||||||||  |||||||||||||||||||| ||||| |||||| |||| ||||| | |||| | |||||||||||||    
T  42051174 ataatattttaacttttaacaagttgaatgcacgacttttgatacatatatttttataatgagttcattaatatgtgtccttgatggcacaagttagcat 42051273  T
Q  286 ttgcc 290  Q
    |||||    
T  42051274 ttgcc 42051278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 14139087 - 14138973
Alignment:
Q  175 tgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgagga 272  Q
    |||||||||| | ||||||| ||||||||||||||||||| | |  || ||||||||| ||||||||||||| | |||| |||||||||||| |||| |     
T  14139087 tgtattggaaaatataatattttaacttttaagaaattgactacacgatttttgatacgtatatttctataaagggttcattaacatgtgcccttgaagg 14138988  T
Q  273 cacaagttagcattt 287  Q
    ||||||||| |||||    
T  14138987 cacaagttaacattt 14138973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 40311710 - 40311815
Alignment:
Q  158 cccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattga--atgcgacttttgatacatatatttctataacgagttcctta 255  Q
    |||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||  |  ||||||||||||| ||||||  ||||| || || ||||    
T  40311710 cccaaaaagagctactttgtattggaaaacataatattttaatttttaagaaattgactacacgacttttgatacgtatattattataatgaatttctta 40311809  T
Q  256 acatgt 261  Q
    ||||||    
T  40311810 acatgt 40311815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 40321786 - 40321891
Alignment:
Q  158 cccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattga--atgcgacttttgatacatatatttctataacgagttcctta 255  Q
    |||||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||  |  ||||||||||||| ||||||  ||||| || || ||||    
T  40321786 cccaaaaagagctactttgtattggaaaacataatattttaatttttaagaaattgactacacgacttttgatacgtatattattataatgaatttctta 40321885  T
Q  256 acatgt 261  Q
    ||||||    
T  40321886 acatgt 40321891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 1008943 - 1009059
Alignment:
Q  173 tttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgag 270  Q
    |||||||||||| ||||||||| |||||||||||| | |||||||   ||||||||||||||||||||||| ||  | || |||||||||| || |||||    
T  1008943 tttgtattggaaaacataatattttaacttttaagtagttgaatgtatgacttttgatacatatatttctacaataaatttcttaacatgtaccattgag 1009042  T
Q  271 gacacaagttagcattt 287  Q
    |  |||| |||||||||    
T  1009043 ggtacaaattagcattt 1009059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 289
Target Start/End: Complemental strand, 24940758 - 24940627
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaa 256  Q
    ||||||||||||| |||| |||| || ||||||||| |||||||||||||| |||||||  |||||||| ||   ||||||||| |||  ||||  ||||    
T  24940758 ccaaaaagagcaagtttgcattgaaaaacataatatattaacttttaagaagttgaatgcacgactttttatgtttatatttctttaataagtt-tttaa 24940660  T
Q  257 catgtgcctttgaggacacaagttagcatttgc 289  Q
    |||||||| |||| |  ||||||||||||||||    
T  24940659 catgtgcccttgaaggtacaagttagcatttgc 24940627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 290
Target Start/End: Original strand, 28675723 - 28675851
Alignment:
Q  164 aagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcgac--ttttgatacatatatttctataacgagttccttaacatgt 261  Q
    |||||||| |||| ||| ||| ||||||||| |  ||||||||  | |||||||| |   ||||||||  ||||||||||||| || |||||||||||||    
T  28675723 aagagcaattttgcattagaaaacataatatatcgacttttaaacagttgaatgcaaaaattttgatatgtatatttctataatgacttccttaacatgt 28675822  T
Q  262 gcctttgaggacacaagttagcatttgcc 290  Q
    ||| || |||||| |||||||||||||||    
T  28675823 gcccttaaggacataagttagcatttgcc 28675851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 22019444 - 22019384
Alignment:
Q  230 catatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||||||| |||||| |||||||||| | |||||| ||||||||||||||||||    
T  22019444 catatatttctataatgagttctttaacatgtgtccttgagggcacaagttagcatttgcc 22019384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 289
Target Start/End: Original strand, 564146 - 564276
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| |||| || |||||| || |||| ||||||||| |  |||||   | |||| |||| |||||||||||||  |  |||||||||    
T  564146 aaaaagagcaactttgcattgcaaaacataacattttaatttttaagaagtcaaatgcacaatttttaatacgtatatttctataataaactccttaaca 564245  T
Q  259 tgtgcctttgaggacacaagttagcatttgc 289  Q
    ||| || |||||||||||||||| |||||||    
T  564246 tgtacccttgaggacacaagttaacatttgc 564276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 45249943 - 45250052
Alignment:
Q  179 ttggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacaca 276  Q
    |||||| ||||||||| |||| ||||||||| ||||||||  |||||||||||   ||||||||||||  | || |||| |||||||| |||||| ||||    
T  45249943 ttggaaaacataatattttaaattttaagaagttgaatgcacgacttttgatatgaatatttctataaaaaatttcttagcatgtgcccttgagggcaca 45250042  T
Q  277 agttagcatt 286  Q
    ||||| ||||    
T  45250043 agttaacatt 45250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 1961701 - 1961605
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||| |||| ||||||||  |||||||||||  |||||||||||||  ||||  |||||||||||| |||||| ||||| ||| ||||||||    
T  1961701 ttaactttttagaagttgaatgcacgacttttgatatttatatttctataataagttttttaacatgtgcccttgagggcacaaattaacatttgcc 1961605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 34936387 - 34936470
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctat 242  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| || || ||||  ||||||| |||||||||||||||||    
T  34936387 aaaaagagcaactttatattaaaaaacataatattttaacttttaaaaagttaaatgtacgactttcgatacatatatttctat 34936470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 29508794 - 29508735
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaat 216  Q
    ||||||||||||||| |||| ||||||| ||||||||| | |||||||||||| ||||||    
T  29508794 acccaaaaagagcaattttgcattggaaaacataatatttaaacttttaagaagttgaat 29508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 30033612 - 30033674
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagtta 281  Q
    ||||||||||||| | |||||||||||  | |||||||||||||||| |||| |||||||||||    
T  30033612 cgacttttgatacgtttatttctataataaattccttaacatgtgcc-ttgatgacacaagtta 30033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 36937485 - 36937578
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtg-cctttgaggacacaagttagcatt 286  Q
    |||||||||||||| ||||||||  |  |||| |||||||||||||||||| |||||  |||||||||| | ||||||| ||||  ||||||||    
T  36937485 ttaacttttaagaagttgaatgcacgtttttttatacatatatttctataatgagtttgttaacatgtgtcatttgagggcacagattagcatt 36937578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 29508694 - 29508637
Alignment:
Q  233 atatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||  |||||||||||||||||| |||||| || |||||| ||||||||    
T  29508694 atatttttataattagttccttaacatgtgcccttgagggcataagttaacatttgcc 29508637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 54997775 - 54997867
Alignment:
Q  198 aacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttg 288  Q
    |||||||||||| ||||||||  |  ||||||||  | ||||||||||| ||||  ||||||||||||| |||| | ||||||||| ||||||    
T  54997775 aacttttaagaagttgaatgcacgcattttgatatgtttatttctataatgagtatcttaacatgtgccattgatggcacaagttaacatttg 54997867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 37861352 - 37861320
Alignment:
Q  73 ttatttaaagggtcatgttaacttgtaccctta 105  Q
    |||||||||||||||||||||||||| ||||||    
T  37861352 ttatttaaagggtcatgttaacttgtgccctta 37861320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 14275885 - 14275751
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||||||||| |||| ||||||| ||||||||| |||||||||||||| ||||||||  |||||||||||| ||||||||||||| |||||||||    
T  14275885 acccaaaaagagcaattttgcattggaaaacataatatattaacttttaagaagttgaatgcatgacttttgatacgtatatttctataatgagttcctt 14275786  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    || ||||||| ||| || ||||||||||||||||||    
T  14275785 aatatgtgcccttg-gggcacaagttagcatttgcc 14275751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 20061090 - 20061221
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| |||| || ||||||||||| |||||||||||| ||||||||   ||||||||||| ||||||||||||| |||||||||| ||    
T  20061090 aaaaagagcaactttgcattgaaaaacataatatgtcaacttttaagaagttgaatgcacaacttttgatacgtatatttctataatgagttccttagca 20061189  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||| ||||||||| ||||||||    
T  20061190 tgtgcccttgagggcacaagttaacatttgcc 20061221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 39420228 - 39420359
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| ||||||| ||||||||| |||||||| ||||| ||||||||  ||| ||| |||  ||||||||||||| |||||||||||||    
T  39420228 aaaaagagcaactttgcattggaaaacataatattttaactttcaagaagttgaatgcacgacatttaatatgtatatttctataatgagttccttaaca 39420327  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||   |||||||||||||||||    
T  39420328 tgtgcccttgagcgaacaagttagcatttgcc 39420359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 32294545 - 32294667
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    ||||||||||| |||  ||||||| ||||||||  || |||||| |||| ||||||||  ||||||| |||||||||||||||||| |||||||||||||    
T  32294545 aaaaagagcaaatttacattggaaaacataatagtttgacttttcagaagttgaatgcacgacttttaatacatatatttctataatgagttccttaaca 32294644  T
Q  259 tgtgcctttgaggacacaagtta 281  Q
    |||||| |||||| |||||||||    
T  32294645 tgtgcccttgagggcacaagtta 32294667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 25626319 - 25626415
Alignment:
Q  196 ttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||||| |||||||  ||||||||||||| |||||||||||||  ||||||||||||||||   |||||| ||||||||||||||||||    
T  25626319 ttaacttttaagaagttgaatgtacgacttttgatacgtatatttctataataagttccttaacatgtgttattgagggcacaagttagcatttgcc 25626415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 290
Target Start/End: Complemental strand, 37230650 - 37230556
Alignment:
Q  198 aacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||||||||||||  |||||||||||||||||||| ||||| || |||||| ||||||| | |||| | ||||||||||||||||||    
T  37230650 aacttttaagaaattgaatgcatgacttttgatacatatatttatataatgatttcctttacatgtgtccttgaaggcacaagttagcatttgcc 37230556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 44068825 - 44068946
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctt 266  Q
    |||||||| |||| || |||| |||  |||||||||||||| |||| |||  |||||||||||||||||||||||||| || |||||||||||||| |||    
T  44068825 caactttgcattgaaaaacatgataatttaacttttaagaagttgattgcacgacttttgatacatatatttctataatgaattccttaacatgtgtctt 44068924  T
Q  267 tgaggacacaagttagcatttg 288  Q
    ||||  ||||| ||| ||||||    
T  44068925 tgagagcacaaattaacatttg 44068946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 157 - 287
Target Start/End: Complemental strand, 39364552 - 39364420
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattga--atgcgacttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||| | |||||||| ||||||| ||||||||| ||||||||| |||| || |  || ||||||||||||   ||||||||||||  ||||||||    
T  39364552 acccaaaaataacaactttgcattggaaaacataatattttaactttttagaagtttactatacgacttttgatatgcatatttctataataagttcctt 39364453  T
Q  255 aacatgtgcctttgaggacacaagttagcattt 287  Q
    |||||||| | ||||||| ||||||||| ||||    
T  39364452 aacatgtgtcattgaggatacaagttagtattt 39364420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 25626591 - 25626468
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctt 266  Q
    |||||||| ||||||| |||| |||  |||||||||||||| |||| | |  |||||||||||| |||||||| ||||  ||||| |||||||||||  |    
T  25626591 caactttgaattggaaaacatgataatttaacttttaagaagttgactacacgacttttgatacgtatatttcaataataagttctttaacatgtgctct 25626492  T
Q  267 tgaggacacaagttagcatttgcc 290  Q
    ||||| ||||||||||||||||||    
T  25626491 tgagggcacaagttagcatttgcc 25626468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 409990 - 409893
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtg-cctttgaggacacaagttagcatttgcc 290  Q
    ||||||||| |||| |||| |||  |||||||||||  | |||||||||||||||||||||||||| || ||||||| | ||||||||| ||||||||    
T  409990 ttaacttttgagaagttgactgcacgacttttgataagtttatttctataacgagttccttaacatatgccctttgaaggcacaagttaacatttgcc 409893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 30549150 - 30549081
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgc 263  Q
    ||||| |||||||| |||| |||  |||||||||||| ||||||||||||| ||||||||||||||||||    
T  30549150 ttaacgtttaagaagttgattgcacgacttttgatacgtatatttctataaagagttccttaacatgtgc 30549081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 232
Target Start/End: Complemental strand, 36528473 - 36528400
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacat 232  Q
    |||||||||| ||||| ||||||| |||||| |||| |||||||||||| |||||||  |||||||||||||||    
T  36528473 aaaaagagcagctttgcattggaaaacataacatgtcaacttttaagaagttgaatgcacgacttttgatacat 36528400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 15079919 - 15079822
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcct---taacatgtgcctttgaggacacaagttagcatttgc 289  Q
    |||||||||||||| ||||||||  |||||||| ||  ||||||||||  | ||||||||   ||||||||||||||||| ||||||||||||||||||    
T  15079919 ttaacttttaagaagttgaatgcacgacttttgctatgtatatttctactatgagttcctaattaacatgtgcctttgag-acacaagttagcatttgc 15079822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 2889232 - 2889103
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| || ||||||||| || | || | || || ||||||||||| |||||||  ||| ||||||||  | ||||| |||||  ||||| ||||||    
T  2889232 aaaaagaggaattttgtattgaaaaatatgaaattttgacttttaagaagttgaatgtacgaattttgatatgtgtatttttataataagttcattaaca 2889133  T
Q  259 tgtgcctttgaggacacaagttagcatttg 288  Q
    |||||| |||||| ||||||||| ||||||    
T  2889132 tgtgcccttgagggcacaagttaacatttg 2889103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 264
Target Start/End: Complemental strand, 9950399 - 9950290
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    |||| ||||||| ||||||| ||||||| ||||||||| ||||||||| | || |||| |||  |||||||  ||| |||||||||||||  | ||||||    
T  9950399 acccgaaaagaggaactttgcattggaaaacataatattttaactttttaaaagttgactgcacgacttttagtacgtatatttctataataaattcctt 9950300  T
Q  255 aacatgtgcc 264  Q
    || |||||||    
T  9950299 aatatgtgcc 9950290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 13349781 - 13349704
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataa 244  Q
    ||||||| ||||| || | ||||||| ||||||||||| ||||||||||  ||||||||||||| ||||||| |||||    
T  13349781 caactttatattgaaaaatataatattttaacttttaaaaaattgaatgtacgacttttgatacttatatttttataa 13349704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 41890030 - 41890106
Alignment:
Q  170 aactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataa 244  Q
    ||||||| ||||||| |||||| || |||| ||||||||| ||||||||  |||||||||| | |||||||||||||    
T  41890030 aactttgcattggaaaacataacattttaatttttaagaagttgaatgcacgacttttgatgcgtatatttctataa 41890106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 290
Target Start/End: Original strand, 7743756 - 7743891
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    |||||||| ||||||||||| |  |||| ||||  ||  |||||||||||||| || | |||  |||||| ||| ||||||||||||||| |||||| ||    
T  7743756 acccaaaatgagcaactttgcacgggaaaacatggtaatttaacttttaagaagttaactgcacgactttcgatgcatatatttctataatgagttcttt 7743855  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||| | |  ||||||| | |||||| ||||||||    
T  7743856 aacatatacacttgaggatataagttaacatttgcc 7743891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 7061591 - 7061546
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgc 263  Q
    ||||||||||| |||||||||||||||  ||||| |||||||||||    
T  7061591 cgacttttgatgcatatatttctataataagttctttaacatgtgc 7061546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 36278336 - 36278381
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaa 206  Q
    |||||||||||||||||||||||| | ||||||| |||| ||||||    
T  36278336 aaaaagagcaactttgtattggaaaatataatattttaatttttaa 36278381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 290
Target Start/End: Complemental strand, 36528378 - 36528341
Alignment:
Q  253 ttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  36528378 ttaacatgtgcccttgagggcacaagttagcatttgcc 36528341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 3348363 - 3348291
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||  |||||||||||||| || || |||||||| |||| |||||| |  |||||| ||||||||    
T  3348363 cgacttttgattaatatatttctataaggaatttcttaacatatgcccttgagggcttaagttaacatttgcc 3348291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 36285091 - 36285035
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg 217  Q
    ||||||||||| |||| |||| || | ||||||| |||||||||||||| |||||||    
T  36285091 aaaaagagcaattttgcattgaaaaaaataatattttaacttttaagaagttgaatg 36285035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 157 - 288
Target Start/End: Complemental strand, 1035698 - 1035565
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||||| |||||||| || | || | ||||||| ||||||||||| || ||||||||  |||||||||||  ||||||||||||| |||||||||    
T  1035698 acccaaaaagaacaactttgcatcgaaaaatataatattttaacttttaataagttgaatgcaagacttttgatatgtatatttctataatgagttcctt 1035599  T
Q  255 aacatgtgcctttgaggacacaagttagcatttg 288  Q
    |||||||||| |||||| ||||||||| ||||||    
T  1035598 aacatgtgcccttgagggcacaagttaacatttg 1035565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 11017977 - 11018108
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||| ||||||||||| ||||||| |||| |||  |||||||||||||| |||| |||  ||||||| |||| |||||||||||||  ||||||||||||    
T  11017977 aaaatgagcaactttgcattggaaaacatgataatttaacttttaagaagttgactgcacgacttttaatacgtatatttctataataagttccttaaca 11018076  T
Q  259 tgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||| |||||  ||||||||| ||||||||    
T  11018077 tgtgcccttgagagcacaagttaacatttgcc 11018108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 157 - 290
Target Start/End: Complemental strand, 16394955 - 16394820
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttcctt 254  Q
    |||||||| || |||||||| |||| || |||| |||  |||||||||||||| | || ||  |||||||| |||| ||||||| ||||| |||||||||    
T  16394955 acccaaaatgaacaactttgcattgaaaaacatgataatttaacttttaagaagtagactgttcgacttttaatacgtatatttttataatgagttcctt 16394856  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||  | |||| ||||||||||||||||||||    
T  16394855 aacatgtatccttgaagacacaagttagcatttgcc 16394820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 14758837 - 14758782
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattga 214  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  14758837 ccaaaaagagcaactttgtattggaaaacataatattttaacttttaagaagttga 14758782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 41884662 - 41884776
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctt 266  Q
    |||||||| ||||||| | | ||||| |||||||||||||| |  |||||  |||||||||||  ||| ||||||||| ||||| ||||||||||||| |    
T  41884662 caactttgcattggaaaataaaatattttaacttttaagaagtcaaatgcatgacttttgatatgtatgtttctataatgagttacttaacatgtgccat 41884761  T
Q  267 tgaggacacaagtta 281  Q
    ||||| |||||||||    
T  41884762 tgagggcacaagtta 41884776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 31262673 - 31262553
Alignment:
Q  173 tttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacat-atatttctataacgagttccttaacatgtgcctttga 269  Q
    |||| ||||||| ||||||||||| |||||||||||| ||||||||   | ||||||||  | |||||||||||| ||||| ||||| || |||| ||||    
T  31262673 tttgcattggaaaacataatatgtcaacttttaagaagttgaatgcacaatttttgatatgttatatttctataatgagtttcttaatatatgcccttga 31262574  T
Q  270 ggacacaagttagcatttgcc 290  Q
    ||  |||||||||||||||||    
T  31262573 gggtacaagttagcatttgcc 31262553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 288
Target Start/End: Complemental strand, 31635542 - 31635438
Alignment:
Q  186 acataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagc 283  Q
    ||||||||| |||||||||||||| ||||||||  ||||||| |||  |||||||| |||| || |||||||||||||  |||||||  ||||| |||||    
T  31635542 acataatattttaacttttaagaagttgaatgcacgacttttaatatgtatatttccataatgaattccttaacatgtatctttgagagcacaaattagc 31635443  T
Q  284 atttg 288  Q
    |||||    
T  31635442 atttg 31635438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 288
Target Start/End: Original strand, 28490533 - 28490662
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||||||||||| ||||||  || ||||||||| ||||||||| |||| |||| ||  ||| ||||||||  ||||||||||||| || |||||||||    
T  28490533 caaaaagagcaactatgtattaaaaaacataatattttaactttttagaagttgattgcacga-ttttgatatgtatatttctataatgaattccttaac 28490631  T
Q  258 atgtgcctttgaggacacaagttagcatttg 288  Q
    ||||| | || ||  ||||| ||||||||||    
T  28490632 atgtgtcattaagagcacaaattagcatttg 28490662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 5799774 - 5799903
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaaca 258  Q
    ||||||||||  |||| |||| || || |||||||| ||| |||||||| ||||||||   ||||||||||  ||||||| |||||  | ||||||||||    
T  5799774 aaaaagagcagttttgcattgaaaaacgtaatatgtcaacctttaagaagttgaatgcacaacttttgatatgtatatttttataataacttccttaaca 5799873  T
Q  259 tgtgcctttgaggacacaagttagcatttg 288  Q
    | || | |||||| ||||||||||||||||    
T  5799874 tatgtccttgagggcacaagttagcatttg 5799903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 29033009 - 29033101
Alignment:
Q  197 taacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    ||||||||||||| ||||||||   ||||||||||| ||||||||||||  || |||||||||||||| | |||| | ||||| |||||||||    
T  29033009 taacttttaagaagttgaatgcacaacttttgatacgtatatttctatactgatttccttaacatgtgtcattgaaggcacaaattagcattt 29033101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 295
Target Start/End: Original strand, 26952047 - 26952179
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaa--tgcgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| ||||||||||||||| ||||||||| ||| ||||||||   |||||  | ||| |||| |||  |||||||||| || ||||| |||||||    
T  26952047 aaaaagagtaactttgtattggaaaacataatattttagcttttaag---ttgaaagtacgatttttaatatgtatatttctacaaggagtt-cttaaca 26952142  T
Q  259 tgtgcctttgaggacacaagttagcatttgccctaaa 295  Q
    | |||| | |||  |||||||||||||||||| ||||    
T  26952143 tatgccctagagagcacaagttagcatttgccataaa 26952179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 8644801 - 8644859
Alignment:
Q  232 tatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||||| |||||  |||||||||||| |||||| ||||||||| ||||||||    
T  8644801 tatatttctataatgagtttattaacatgtgcccttgagggcacaagttaacatttgcc 8644859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 16583222 - 16583163
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaa 277  Q
    ||||||||||||| ||| ||| |||||  ||||||||||||||||| |||||| ||||||    
T  16583222 cgacttttgatacgtatgtttttataataagttccttaacatgtgcttttgagaacacaa 16583163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 37316644 - 37316709
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacat 259  Q
    |||||||||||||| || ||| |  || ||||||||||||||||| ||||| ||||||||||||||    
T  37316644 ttaacttttaagaagttaaatacacgatttttgatacatatatttttataatgagttccttaacat 37316709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 25366802 - 25366725
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgccctaaa 295  Q
    |||||||||||||  ||| |||||||  ||||||||||||||||| | |||||  ||||||||| | |||||| ||||    
T  25366802 cgacttttgatacggataattctatattgagttccttaacatgtgtccttgagagcacaagttaacgtttgccttaaa 25366725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 950123 - 950079
Alignment:
Q  218 cgacttttgatacatatatttctataacgagttccttaacatgtg 262  Q
    ||||||||||||| |||| |||||||| ||||| |||||||||||    
T  950123 cgacttttgatacgtatacttctataatgagttgcttaacatgtg 950079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 42066736 - 42066645
Alignment:
Q  175 tgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcc 264  Q
    ||||||| || |||||| || | |||||||||||  ||||||||  ||||||| ||| |||||||||||| | |||||| |||| |||||||    
T  42066736 tgtattgaaaaacataacatttcaacttttaagatgttgaatgcacgacttttaatatatatatttctattatgagttctttaatatgtgcc 42066645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 30249271 - 30249141
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    ||||| ||| ||||||| |||| || ||||||||| |||||||||||||| |||| |||  || ||||||||| ||||||||||||| ||||||||||||    
T  30249271 caaaacgagtaactttgcattgaaaaacataatattttaacttttaagaagttgactgcacgaattttgatacctatatttctataatgagttccttaac 30249172  T
Q  258 atgtgcctttgaggacacaagttagcatttg 288  Q
    ||||| | || ||| ||||||||||||||||    
T  30249171 atgtgtcattaagggcacaagttagcatttg 30249141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 30438430 - 30438533
Alignment:
Q  189 taatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatt 286  Q
    |||||| | |||||||||||| |||||||  ||||| ||||||| ||||||| ||||| ||||||| ||||||||||| ||||||  |||||||||||||    
T  30438430 taatatttaaacttttaagaagttgaatgtacgactattgatacgtatatttttataaagagttccgtaacatgtgcccttgagggtacaagttagcatt 30438529  T
Q  287 tgcc 290  Q
    ||||    
T  30438530 tgcc 30438533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 3787555 - 3787423
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||||||||| |||  ||| ||| |||| |||  ||||||||||||||||||||||   ||||||| |||| ||||||| |||||  ||||| |||||    
T  3787555 caaaaagagcaattttacattagaaaacatgatagtttaacttttaagaaattgaatgtatgacttttaatacgtatatttttataataagttctttaac 3787456  T
Q  258 atgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||| | |||||| ||||| ||||||||||||    
T  3787455 atgtgtccttgagggcacaaattagcatttgcc 3787423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 6469585 - 6469713
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||| ||||||||||| |||| || |||| |||  |||| ||||||||| |||| |||  ||||||| ||| |||||||||||||| || ||||||||||    
T  6469585 aaaatgagcaactttgcattgaaaaacatgataatttaatttttaagaagttgactgcacgacttttaataaatatatttctataatgaattccttaaca 6469684  T
Q  259 tgtgcctttgaggacacaagttagcattt 287  Q
    | |||| ||||||  ||||||||||||||    
T  6469685 tatgccattgagggtacaagttagcattt 6469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 288
Target Start/End: Complemental strand, 11659382 - 11659252
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||||| ||||||| |||||||| ||| | ||| | ||||||||| || || |||||  || |||| ||||||||||||||||||    |||||||||    
T  11659382 caaaaagaacaactttatattggaaaacacattatatcaacttttaataagttcaatgcatgattttttatacatatatttctataatatattccttaac 11659283  T
Q  258 atgtgcctttgaggacacaagttagcatttg 288  Q
    |||| || |||||| || |||||||||||||    
T  11659282 atgttcccttgagggcataagttagcatttg 11659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 1065715 - 1065619
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttcctt 254  Q
    ||||||||  || ||| |||||||| | ||||||  ||||||||||| || |||||||  ||||||||||||||||||||| ||| | |||||||||    
T  1065715 caaaaagaataattttatattggaaaatataatagtttaacttttaataagttgaatgtacgacttttgatacatatatttttattatgagttcctt 1065619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 2831476 - 2831380
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaacatgtgc 263  Q
    |||||||||||| ||| |||||| || |||| ||||||||| |||||||  |||| | |||| |||||||||||||||  | ||| |||||||||||    
T  2831476 caactttgtattagaaaacataacattttaatttttaagaagttgaatgcacgacctgtgatgcatatatttctataataaattctttaacatgtgc 2831380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 29286068 - 29285988
Alignment:
Q  188 ataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctt 266  Q
    ||||||| |||| ||||||||| ||||||||  || |||| |||| ||||||||||||| |||||| ||||||| ||||||    
T  29286068 ataatattttaaattttaagaagttgaatgcacgattttttatacgtatatttctataatgagttcattaacatttgcctt 29285988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 8504594 - 8504497
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaa 256  Q
    ||||||| ||||||| ||||| || | ||||||| |||| |||||||||||||||||  | |||||| ||| |||| |||| |||| |||||| ||||    
T  8504594 aaaaagaacaactttatattgaaaaatataatattttaatttttaagaaattgaatgcacaacttttaatatatatgtttcgataatgagttcattaa 8504497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 5850046 - 5849989
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg 217  Q
    |||||||||||| |||| ||| ||| ||||||| |||||| ||||||||| |||||||    
T  5850046 caaaaagagcaattttgcatttgaaaacataatttgttaatttttaagaagttgaatg 5849989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 14215165 - 14215233
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||||||||  |||||  ||||| |||| ||||||| || | ||||||||||| ||||||||    
T  14215165 ttttgatacatatattcttataataagttcattaagatgtgcccttcaagacacaagttaacatttgcc 14215233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 35033529 - 35033490
Alignment:
Q  247 agttccttaacatgtgcctttgaggacacaagttagcattt 287  Q
    |||||||||||||||||| |||||||||||||||| |||||    
T  35033529 agttccttaacatgtgcc-ttgaggacacaagttaacattt 35033490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 160 - 263
Target Start/End: Complemental strand, 10523782 - 10523677
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaac 257  Q
    |||||||| ||| ||| |||||| | ||||||||  |||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||||||    
T  10523782 caaaaagaacaattttatattggtaaacataatagtttaacttttaagaaattgaatgcacgacttttgatacgtatatttctataatgagttccttaac 10523683  T
Q  258 atgtgc 263  Q
    ||||||    
T  10523682 atgtgc 10523677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 43340405 - 43340293
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||| |||||||  | |||||| || | ||||||||| |||  ||||||||||||    
T  43340405 aaaaagagcaactttgcattggaaaacataatatattaacttttaagaagttgaatgtacaactttttatgcttatatttctttaataagttccttaaca 43340306  T
Q  259 tgtgcctttgagg 271  Q
    |||| ||||||||    
T  43340305 tgtgtctttgagg 43340293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 26105139 - 26105005
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttcctt 254  Q
    |||||||| ||| ||||||| || |||| ||||||||| | |||||||||||| ||||||||  ||||||| || | ||||||||| |||  ||||||||    
T  26105139 acccaaaatgagaaactttgcatcggaaaacataatatatcaacttttaagaatttgaatgcacgactttttatgcgtatatttctttaataagttcctt 26105040  T
Q  255 aacatgtgcctttgaggacacaagttagcatttgc 289  Q
    |||||||| | |||||  |||||||||||||||||    
T  26105039 aacatgtgtcattgagtgcacaagttagcatttgc 26105005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 196 - 288
Target Start/End: Original strand, 41144651 - 41144745
Alignment:
Q  196 ttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttg 288  Q
    ||||||||||| || ||||||||  |||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||    
T  41144651 ttaacttttaaaaagttgaatgcacgacttttgatatgtatatttctataatgagttccttaacatgtgcccttgaggacacaagataacatttg 41144745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 165 - 295
Target Start/End: Complemental strand, 14547945 - 14547813
Alignment:
Q  165 agagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtg 262  Q
    |||||||||||| |||| || | || |||  ||||||||||| ||||| | |||  |||||||||| | ||||||||||||| || ||||||||||||||    
T  14547945 agagcaactttgcattgaaagatatgataatttaacttttaataaattaactgcacgacttttgatgcgtatatttctataaggaattccttaacatgtg 14547846  T
Q  263 cctttgaggacacaagttagcatttgccctaaa 295  Q
    || |||||| || |||||| |||||||| ||||    
T  14547845 cccttgagggcataagttaacatttgccttaaa 14547813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 4164398 - 4164457
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc 218  Q
    |||||||||||||||||  ||||||| | |||||||||||||||||||||| ||||||||    
T  4164398 ccaaaaagagcaactttacattggaaaatataatatgttaacttttaagaagttgaatgc 4164457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 29557602 - 29557513
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattga--atgcgacttttgatacatatatttctataa 244  Q
    |||||||| ||||||||||||||||||| |||| |||  ||||||||||| || || |  |  |||||||||||||||||||||||||||    
T  29557602 acccaaaatgagcaactttgtattggaaaacatgataatttaacttttaaaaatttaactacacgacttttgatacatatatttctataa 29557513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 967664 - 967577
Alignment:
Q  187 cataatatgttaacttttaagaaa-ttgaatgcg--acttttgatacatatatttctataacgagttccttaacatgtgcctttgagg 271  Q
    |||||||| ||||||||||| ||| ||| ||||   |||||| |||||||||||||||||| || |||||||||||||||| ||||||    
T  967664 cataatattttaacttttaaaaaagttggatgcaccacttttaatacatatatttctataatgaattccttaacatgtgcccttgagg 967577  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 554321 - 554427
Alignment:
Q  159 ccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaa 256  Q
    |||||| || ||| |||| ||||||| | || |||  ||||||||||| || |||| |||  | ||||| |||||||||||||||||| |||||||||||    
T  554321 ccaaaatgaacaattttgcattggaaaatatgataatttaacttttaaaaagttgactgcacggcttttaatacatatatttctataatgagttccttaa 554420  T
Q  257 catgtgc 263  Q
    |||||||    
T  554421 catgtgc 554427  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 2987503 - 2987570
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||||||||| ||||  |||||  |||||||||||  || ||||||||||||||||||||||    
T  2987503 ttttgatacatatatttatatagtgagttt-ttaacatgtgctcttaaggacacaagttagcatttgcc 2987570  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 40845853 - 40845785
Alignment:
Q  222 ttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    ||||||||||||||||| ||||| |||||||||||||| || | || ||| ||||| ||| ||||||||    
T  40845853 ttttgatacatatatttttataatgagttccttaacatatgtccttaagggcacaaattaacatttgcc 40845785  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 24519443 - 24519565
Alignment:
Q  169 caactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatatttctataacgagttccttaac-atgtgcct 265  Q
    |||||||| |||| || | |||| |||| |||||||||||| |||||||  |||||| ||||||| ||||| ||||||  | ||  ||||| |||||||     
T  24519443 caactttgcattgaaaaatataacatgtcaacttttaagaagttgaatgcacgacttgtgatacaaatattcctataataaattttttaacaatgtgccc 24519542  T
Q  266 ttgaggacacaagttagcatttg 288  Q
    |||||  ||||||||||||||||    
T  24519543 ttgagagcacaagttagcatttg 24519565  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 12000107 - 12000144
Alignment:
Q  232 tatatttctataacgagttccttaacatgtgcctttga 269  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12000107 tatatttctataacgagttcgttaacatgtgcccttga 12000144  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 40044832 - 40044893
Alignment:
Q  157 acccaaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc 218  Q
    ||||||||||||||| ||||| |||||| |||||  || |||| ||||||||| ||||||||    
T  40044832 acccaaaaagagcaattttgtgttggaaaacatacaattttaatttttaagaagttgaatgc 40044893  T

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Target: scaffold0116 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 163 - 290
Target Start/End: Original strand, 6040 - 6173
Alignment:
Q  163 aaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatg 260  Q
    |||||| || |||| ||| ||| |||||| || |||| ||||||||| |||||| |  |||||||||||||||||| ||||||| |||||||||||||||    
T  6040 aaagagtaattttgcatttgaaaacataacattttaatttttaagaagttgaatccatgacttttgatacatatatatctataatgagttccttaacatg 6139  T
Q  261 t----gcctttgaggacacaagttagcatttgcc 290  Q
    |    ||||| || ||||||||||||||||||||    
T  6140 tgtccgccttcgaagacacaagttagcatttgcc 6173  T

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Target: scaffold0116; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 3009 - 3100
Alignment:
Q  173 tttgtattggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtg 262  Q
    |||| ||| ||| |||||| || |||||||||||||| ||||||||  |||||||||||||||||| ||||||| |||||||||||||||||    
T  3009 tttgcatttgaaaacataacattttaacttttaagaagttgaatgcatgacttttgatacatatatatctataatgagttccttaacatgtg 3100  T

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Target: scaffold0542 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 4614 - 4510
Alignment:
Q  188 ataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagttccttaacatgtgcctttgaggacacaagttagcat 285  Q
    ||||||||  || ||||||||| ||||||||  |  ||||||||  ||||||||||||| ||||  ||||||||||| | |||||| |||||||||||||    
T  4614 ataatatgacaatttttaagaagttgaatgcacgcattttgatatgtatatttctataatgagtatcttaacatgtgtccttgagggcacaagttagcat 4515  T
Q  286 ttgcc 290  Q
    |||||    
T  4514 ttgcc 4510  T

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Target: scaffold0482 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 561 - 635
Alignment:
Q  178 attggaatacataatatgttaacttttaagaaattgaatgc--gacttttgatacatatatttctataacgagtt 250  Q
    ||||||| |||||| || ||||  |||||||| ||||||||  |||||||||||||||||||||||||| |||||    
T  561 attggaaaacataacattttaatgtttaagaagttgaatgcacgacttttgatacatatatttctataatgagtt 635  T

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Target: scaffold0127 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 238
Target Start/End: Original strand, 13078 - 13158
Alignment:
Q  160 caaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatg--cgacttttgatacatatattt 238  Q
    |||||||||||| |||| ||| ||| ||||||| |||||| ||||||||| |||||||  | ||||||||||||| |||||    
T  13078 caaaaagagcaattttgcatttgaaaacataatttgttaatttttaagaagttgaatgtactacttttgatacatctattt 13158  T

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Target: scaffold0328 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 12533 - 12431
Alignment:
Q  161 aaaaagagcaactttgtattggaatacataatatgttaacttttaagaaattgaatgcg--acttttgatacatatatttctataacgagttccttaaca 258  Q
    |||||||| ||||||| ||||||| |||| | || |||  ||||||||| ||||||||   ||||||||||| ||||||| |||||  ||||| ||||||    
T  12533 aaaaagagtaactttgcattggaaaacatgacattttagtttttaagaagttgaatgcacaacttttgatacgtatatttttataattagttctttaaca 12434  T
Q  259 tgt 261  Q
    |||    
T  12433 tgt 12431  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 37716 - 37684
Alignment:
Q  73 ttatttaaagggtcatgttaacttgtaccctta 105  Q
    |||||||||||||||||||||||||| ||||||    
T  37716 ttatttaaagggtcatgttaacttgtgccctta 37684  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 322008 - 322052
Alignment:
Q  246 gagttccttaacatgtgcctttgaggacacaagttagcatttgcc 290  Q
    |||||||||||||||||  ||||| | ||||||||||||||||||    
T  322008 gagttccttaacatgtgtttttgaaggcacaagttagcatttgcc 322052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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