View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5713-Insertion-6 (Length: 654)

Name: NF5713-Insertion-6
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5713-Insertion-6
NF5713-Insertion-6
[»] chr3 (20 HSPs)
chr3 (15-504)||(35057872-35058362)
chr3 (514-654)||(35058405-35058543)
chr3 (395-507)||(3845193-3845304)
chr3 (208-260)||(40147885-40147937)
chr3 (208-263)||(25359606-25359661)
chr3 (208-263)||(52364049-52364104)
chr3 (556-622)||(14022065-14022131)
chr3 (269-303)||(31708221-31708255)
chr3 (572-624)||(5407008-5407060)
chr3 (208-243)||(41115414-41115449)
chr3 (206-252)||(1441424-1441470)
chr3 (395-492)||(38022330-38022424)
chr3 (210-263)||(8801990-8802043)
chr3 (208-261)||(35058359-35058412)
chr3 (208-261)||(44771692-44771745)
chr3 (269-301)||(5406973-5407005)
chr3 (214-261)||(32523374-32523422)
chr3 (269-301)||(40147834-40147866)
chr3 (208-243)||(49634091-49634127)
chr3 (211-263)||(54596819-54596871)
[»] chr1 (35 HSPs)
chr1 (211-303)||(30557505-30557605)
chr1 (208-303)||(1514341-1514446)
chr1 (206-301)||(3016158-3016263)
chr1 (212-261)||(11049252-11049301)
chr1 (206-267)||(47321935-47321995)
chr1 (214-304)||(51500830-51500915)
chr1 (207-303)||(28083870-28083976)
chr1 (211-261)||(30850433-30850483)
chr1 (212-261)||(3515820-3515869)
chr1 (208-261)||(28287370-28287423)
chr1 (208-261)||(48549046-48549099)
chr1 (208-263)||(50571282-50571337)
chr1 (212-261)||(6021806-6021855)
chr1 (217-303)||(7524120-7524216)
chr1 (208-261)||(8381964-8382017)
chr1 (208-260)||(20026199-20026251)
chr1 (581-625)||(28287257-28287301)
chr1 (213-262)||(36780149-36780199)
chr1 (213-259)||(40663015-40663061)
chr1 (211-261)||(47892422-47892472)
chr1 (268-301)||(213265-213298)
chr1 (208-261)||(7790676-7790729)
chr1 (208-261)||(10324972-10325025)
chr1 (432-493)||(24587838-24587899)
chr1 (216-261)||(27849145-27849190)
chr1 (206-263)||(34387725-34387782)
chr1 (208-261)||(37522944-37522997)
chr1 (268-300)||(213522-213554)
chr1 (269-301)||(1416205-1416237)
chr1 (221-261)||(31362239-31362279)
chr1 (210-261)||(33693020-33693072)
chr1 (269-301)||(34915135-34915167)
chr1 (207-263)||(38797661-38797717)
chr1 (325-385)||(40352493-40352553)
chr1 (267-299)||(47053471-47053503)
[»] chr7 (21 HSPs)
chr7 (208-258)||(41386852-41386902)
chr7 (403-504)||(27571763-27571863)
chr7 (208-261)||(38123700-38123753)
chr7 (556-622)||(45557457-45557523)
chr7 (189-249)||(17111836-17111896)
chr7 (556-624)||(33853409-33853477)
chr7 (209-259)||(28725088-28725138)
chr7 (208-303)||(45557363-45557468)
chr7 (208-261)||(27571860-27571913)
chr7 (208-261)||(30182330-30182383)
chr7 (268-301)||(40561742-40561775)
chr7 (559-606)||(12306818-12306865)
chr7 (208-263)||(22195862-22195917)
chr7 (208-259)||(29842087-29842138)
chr7 (459-497)||(12306933-12306971)
chr7 (554-620)||(15050383-15050449)
chr7 (208-242)||(26984533-26984567)
chr7 (208-299)||(40491576-40491677)
chr7 (556-624)||(29829294-29829362)
chr7 (399-467)||(38123769-38123836)
chr7 (556-620)||(40561687-40561751)
[»] chr6 (30 HSPs)
chr6 (189-262)||(6895983-6896056)
chr6 (208-301)||(4910906-4911009)
chr6 (208-268)||(6654117-6654177)
chr6 (208-259)||(765422-765473)
chr6 (208-303)||(16540105-16540210)
chr6 (208-261)||(5724664-5724717)
chr6 (208-303)||(25195348-25195451)
chr6 (395-496)||(1485238-1485339)
chr6 (192-262)||(31725758-31725828)
chr6 (208-256)||(7952748-7952796)
chr6 (555-622)||(34911034-34911100)
chr6 (208-303)||(3482044-3482149)
chr6 (208-261)||(1485180-1485233)
chr6 (208-261)||(30927041-30927094)
chr6 (572-624)||(19601377-19601429)
chr6 (556-624)||(28466909-28466977)
chr6 (556-624)||(34736756-34736824)
chr6 (206-261)||(852528-852583)
chr6 (208-263)||(28052947-28053002)
chr6 (395-497)||(5724721-5724822)
chr6 (269-303)||(8856376-8856410)
chr6 (432-497)||(579126-579191)
chr6 (208-257)||(25195848-25195897)
chr6 (208-261)||(26280603-26280656)
chr6 (572-617)||(34026417-34026462)
chr6 (556-620)||(882778-882842)
chr6 (461-497)||(2234305-2234341)
chr6 (325-373)||(16540241-16540289)
chr6 (269-301)||(34620955-34620987)
chr6 (269-301)||(34748392-34748424)
[»] chr4 (39 HSPs)
chr4 (212-298)||(16551959-16552053)
chr4 (208-305)||(32818350-32818457)
chr4 (395-504)||(2635056-2635164)
chr4 (207-263)||(8604654-8604710)
chr4 (208-263)||(55186994-55187049)
chr4 (206-263)||(9064227-9064284)
chr4 (208-263)||(50061660-50061715)
chr4 (213-267)||(49138791-49138845)
chr4 (190-259)||(1616371-1616439)
chr4 (560-624)||(48045677-48045741)
chr4 (208-263)||(9134608-9134663)
chr4 (206-261)||(35065059-35065114)
chr4 (208-303)||(21691194-21691299)
chr4 (395-449)||(33843584-33843637)
chr4 (554-624)||(33843801-33843871)
chr4 (208-303)||(53713543-53713648)
chr4 (208-261)||(14596687-14596740)
chr4 (208-261)||(30357510-30357563)
chr4 (208-261)||(31012773-31012826)
chr4 (208-243)||(29779106-29779141)
chr4 (390-469)||(29904120-29904198)
chr4 (210-261)||(41370044-41370095)
chr4 (220-263)||(45011884-45011927)
chr4 (209-259)||(1048716-1048766)
chr4 (211-261)||(26617469-26617519)
chr4 (208-261)||(32817486-32817540)
chr4 (273-303)||(35065136-35065166)
chr4 (459-504)||(33560655-33560700)
chr4 (208-261)||(37439143-37439196)
chr4 (208-261)||(43571476-43571529)
chr4 (268-301)||(55927754-55927787)
chr4 (267-303)||(1616457-1616493)
chr4 (325-365)||(1616523-1616563)
chr4 (321-349)||(5025588-5025616)
chr4 (208-243)||(11271589-11271625)
chr4 (213-261)||(16643981-16644029)
chr4 (267-303)||(45694681-45694717)
chr4 (395-467)||(49138956-49139027)
chr4 (267-303)||(52342023-52342059)
[»] chr8 (27 HSPs)
chr8 (210-303)||(32927892-32927995)
chr8 (208-261)||(4662937-4662990)
chr8 (208-261)||(15677850-15677903)
chr8 (210-303)||(35494990-35495093)
chr8 (208-263)||(13384686-13384741)
chr8 (208-267)||(32994270-32994329)
chr8 (208-263)||(38868496-38868551)
chr8 (208-263)||(44141082-44141137)
chr8 (208-303)||(26100128-26100233)
chr8 (208-303)||(37684403-37684508)
chr8 (556-624)||(2778605-2778673)
chr8 (189-261)||(38335895-38335967)
chr8 (208-263)||(7244633-7244688)
chr8 (208-261)||(10367993-10368046)
chr8 (210-303)||(16972046-16972149)
chr8 (174-261)||(18355882-18355970)
chr8 (206-265)||(6027079-6027138)
chr8 (210-261)||(10378232-10378283)
chr8 (206-265)||(11572488-11572547)
chr8 (208-263)||(36200164-36200219)
chr8 (208-242)||(7644562-7644596)
chr8 (269-303)||(9461520-9461554)
chr8 (321-363)||(41891804-41891846)
chr8 (267-301)||(43492221-43492255)
chr8 (208-261)||(30098908-30098961)
chr8 (52-80)||(11784697-11784725)
chr8 (267-303)||(32101140-32101176)
[»] chr5 (24 HSPs)
chr5 (206-261)||(9818730-9818785)
chr5 (206-263)||(18851114-18851171)
chr5 (208-263)||(38845441-38845496)
chr5 (206-260)||(6951340-6951394)
chr5 (556-622)||(18637375-18637441)
chr5 (208-303)||(42858106-42858211)
chr5 (208-263)||(14299328-14299383)
chr5 (391-431)||(2090182-2090222)
chr5 (208-263)||(39097244-39097299)
chr5 (213-299)||(8121547-8121633)
chr5 (558-624)||(34250279-34250345)
chr5 (208-261)||(18637282-18637335)
chr5 (208-263)||(11648080-11648135)
chr5 (208-263)||(34250383-34250438)
chr5 (406-504)||(10898626-10898723)
chr5 (269-303)||(11577603-11577637)
chr5 (209-255)||(22226276-22226322)
chr5 (208-257)||(22572442-22572491)
chr5 (459-504)||(29922582-29922627)
chr5 (212-261)||(36639939-36639988)
chr5 (395-431)||(22572557-22572593)
chr5 (206-258)||(31906255-31906307)
chr5 (432-504)||(34250435-34250507)
chr5 (393-449)||(38845650-38845705)
[»] chr2 (26 HSPs)
chr2 (206-261)||(42740973-42741028)
chr2 (397-490)||(33047650-33047742)
chr2 (208-259)||(43501123-43501174)
chr2 (211-261)||(2002729-2002779)
chr2 (208-303)||(33019138-33019243)
chr2 (208-261)||(30503207-30503260)
chr2 (267-303)||(16518845-16518881)
chr2 (210-261)||(42982544-42982595)
chr2 (208-265)||(12037059-12037116)
chr2 (193-303)||(13912770-13912890)
chr2 (325-376)||(12850727-12850778)
chr2 (208-243)||(21234577-21234612)
chr2 (269-303)||(680272-680306)
chr2 (336-390)||(22536146-22536200)
chr2 (556-618)||(30503299-30503361)
chr2 (272-301)||(1976848-1976877)
chr2 (206-263)||(3352072-3352129)
chr2 (268-301)||(15220845-15220878)
chr2 (206-263)||(31453379-31453436)
chr2 (268-301)||(40401627-40401660)
chr2 (208-241)||(43717322-43717355)
chr2 (269-301)||(8800682-8800714)
chr2 (269-317)||(9143044-9143092)
chr2 (267-303)||(11504044-11504080)
chr2 (271-299)||(42982615-42982643)
chr2 (554-606)||(43717415-43717467)
[»] scaffold0168 (3 HSPs)
scaffold0168 (208-263)||(31824-31879)
scaffold0168 (395-497)||(31719-31820)
scaffold0168 (271-303)||(31900-31932)
[»] scaffold0005 (1 HSPs)
scaffold0005 (208-261)||(220638-220691)
[»] scaffold0361 (1 HSPs)
scaffold0361 (269-301)||(14098-14130)


Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 35057872 - 35058362
Alignment:
Q  15 gactatgtataagctatttctatgttaaattgtttagatatgttataagttattttcataagctattccaaccgggttatagaaataagacgtaaaaagt 114  Q
    |||| |||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||    
T  35057872 gactgtgtatacgctatttctatgttaaactgtttagataagttataagttattttcataagctattccaaccgagttatagaaataaggcgtaaaatgt 35057971  T
Q  115 ttatggacattccataaggtctctcaaaatgtctactgtatgtttggttccactcttaaaattgattttgccattttggttgttgtcgaggataattgat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  35057972 ttatggacattccataaggtctctcaaaatgtctactgtatgtttggttccactcttagaattgattttgccattttggttgttgttgaggataattgat 35058071  T
Q  215 tctacttgaagctaggatttgtagcttttaattctagaattgattttcatacagttcaactcac-ttttacatgaatgtatccaaacacatacccttttt 313  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||    
T  35058072 tctacatgaagctaggatttgtagcttttaattatagaattgattttcatacagttcaactcactttttacatgaatgtatccaaacacataccactttt 35058171  T
Q  314 agtccggaactaaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacactgccaaacatacgcttaatgtatgtttggtttcactt 413  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  35058172 agtccggaactaaaatcaattctacaaaatcaattctatcaaaattaattctccacaccgcacggccaaacatacgcttaatgtatgtttggtttcactt 35058271  T
Q  414 ctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35058272 ctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctctcgagtagaattgattttgcctcaagaatt 35058362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 514 - 654
Target Start/End: Original strand, 35058405 - 35058543
Alignment:
Q  514 ttgattttaacactcaaatattattgttcagctcactttttatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactca 613  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35058405 ttgattttaacactcaaatattattgttcaactcactttt-atatccaaacataaagcactttatcttcaactcacttttagttagaatcaatccactca 35058503  T
Q  614 aaatcaattttgtggatgtagaaccatacataaacttattg 654  Q
    ||||||||||||||||||| |||||||||||| ||||||||    
T  35058504 aaatcaattttgtggatgt-gaaccatacatacacttattg 35058543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 507
Target Start/End: Complemental strand, 3845304 - 3845193
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 494  Q
    ||||||||||||| ||||| |||||  |||||||||| ||||||||| ||||||| || || | ||||||||| | | |||  ||||||||||||| |||    
T  3845304 tgtatgtttggttccacttttggagtaaccaaaattg-attctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgattctgc 3845206  T
Q  495 ctcaagaatttat 507  Q
    ||| |||||||||    
T  3845205 ctctagaatttat 3845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 40147937 - 40147885
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 260  Q
    |||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  40147937 aattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 25359661 - 25359606
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| ||| |||||||| |||| |||||| ||||||||||||    
T  25359661 aattgattctacttgaagttagaatttgtagttttttattctataattgattttca 25359606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 52364049 - 52364104
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||| ||||||||||||||| ||||| |||||||| |||||| ||||||||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttca 52364104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 622
Target Start/End: Original strand, 14022065 - 14022131
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 622  Q
    |||||||||| |||  ||||||||  |||||||||||||| |||||| ||| |||||||||||||||    
T  14022065 tatccaaacacaaattactttatctgcaactcacttttagatagaataaattcactcaaaatcaatt 14022131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 31708255 - 31708221
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||||||||||||||||||||||    
T  31708255 ttcaactcacttttacatgaatgtatccaaacaca 31708221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 5407008 - 5407060
Alignment:
Q  572 actttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||| | |||||||| |||||| |||||||||| |||||||||||||||||    
T  5407008 actttaccttcaactcaattttagctagaatcaattcactcaaaatcaatttt 5407060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 41115449 - 41115414
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagctttt 243  Q
    |||||||||||||||||||||| |||||||||||||    
T  41115449 aattgattctacttgaagctagaatttgtagctttt 41115414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 1441470 - 1441424
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctaga 252  Q
    ||||| || |||||||||| |||||||||||||||||| ||||||||    
T  1441470 ataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 492
Target Start/End: Original strand, 38022330 - 38022424
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatttt 492  Q
    ||||||||||||||||||||| || |||||||| || |||||||||  ||||||| || || |  |||||||||| ||||   |||||||||||||||    
T  38022330 tgtatgtttggtttcacttctagaaggaccaaagtt-gattctagaagtgtagaattgattttggcatgtttgattgctc--aagtagaattgatttt 38022424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 8801990 - 8802043
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||  |||||||||||| ||||| || ||||| |||||||||    
T  8801990 ttgattctacttgaatttaggatttgtagtttttagttttagaaatgattttca 8802043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 35058359 - 35058412
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||| |||||| | ||  ||||||| |||||||||||||||||    
T  35058359 aattgattctacttggagctagaaattcgagcttttgattctagaattgatttt 35058412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 44771692 - 44771745
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||| | || |||| ||||||||||||| |||||| ||||||||||    
T  44771692 aattgattctacctaaatctagaatttgtagcttttgattctaaaattgatttt 44771745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 5406973 - 5407005
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    ||||| |||||||||||||||||||||||||||    
T  5406973 ttcaaatcacttttacatgaatgtatccaaaca 5407005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 32523422 - 32523374
Alignment:
Q  214 ttctacttg-aagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||||||||||    
T  32523422 ttctacttggaagttaggatttgtagcttttgattctaaaattgatttt 32523374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 40147866 - 40147834
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||| ||||||||||||||    
T  40147866 ttcaactcacttttacattaatgtatccaaaca 40147834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 49634127 - 49634091
Alignment:
Q  208 aattgattcta-cttgaagctaggatttgtagctttt 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49634127 aattgattctaacttgaagctaggatttgtagctttt 49634091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 54596819 - 54596871
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||| || |||||| ||| ||||||| ||||||||| |||||||||||||||    
T  54596819 tgattttatttgaagttagaatttgtaacttttaattttagaattgattttca 54596871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 30557505 - 30557605
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgattttca--------tacagttcaactcacttttacatgaatgtatccaaacac 302  Q
    |||||||| ||||||||||||||||||| |||| |||||||||||||||||||        || ||||||||||||||||| ||||||||||||||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgattttcacacaaatttatagttcaactcacttttatatgaatgtatccaaacac 30557604  T
Q  303 a 303  Q
    |    
T  30557605 a 30557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 1514341 - 1514446
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 297  Q
    |||| ||||||||||||||||||||||||||||||| ||| || |||||||||| | |||          |||||||||| |||||||||||||||||||    
T  1514341 aatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatcca 1514440  T
Q  298 aacaca 303  Q
    ||||||    
T  1514441 aacaca 1514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 301
Target Start/End: Original strand, 3016158 - 3016263
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatc 295  Q
    |||||||||||||||||||  ||| ||||||||||||| |||||||||||||| || |          ||| ||||||||||||||||||||||||||||    
T  3016158 ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatc 3016257  T
Q  296 caaaca 301  Q
    ||||||    
T  3016258 caaaca 3016263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 11049252 - 11049301
Alignment:
Q  212 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttt 11049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 47321995 - 47321935
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 267  Q
    |||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  47321995 ataattgattatacttgaagctagaatttgcag-ttttaattctagaattgattttcataca 47321935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 51500915 - 51500830
Alignment:
Q  214 ttctacttgaagctaggatttgtagcttttaattctagaattgattttcatacagttcaactcacttttacatgaatgtatccaaacacat 304  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||  ||||   ||||||| |||||||||||| ||||  |||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatttt--taca---caactcaattttacatgaatttatcttaacacat 51500830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 28083976 - 28083870
Alignment:
Q  207 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcatac----------agttcaactcacttttacatgaatgtatcc 296  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||| ||||| | ||          |||||| ||||||||||||||||| |||||    
T  28083976 taattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcacttttacatgaatatatcc 28083877  T
Q  297 aaacaca 303  Q
    |||||||    
T  28083876 aaacaca 28083870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 30850483 - 30850433
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgatttt 30850433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 3515820 - 3515869
Alignment:
Q  212 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||| | ||||||||||| |||||||||||||||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgatttt 3515869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 28287423 - 28287370
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgatttt 28287370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 48549099 - 48549046
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||| | ||||||||| | |||||||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgatttt 48549046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 50571282 - 50571337
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||| |||| ||||    
T  50571282 aattgattctacttgaagttaggatttgtagttttttattctagaactgatgttca 50571337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 6021806 - 6021855
Alignment:
Q  212 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||| |||||||||| |||||| ||| ||||||    
T  6021806 gattctacttgaagctaggatatgtagcttttgattctataatagatttt 6021855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 7524120 - 7524216
Alignment:
Q  217 tacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||| |          || |||||||||||||||||||| ||||| ||||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacaca 7524216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 8381964 - 8382017
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||| | ||||||| | || ||||||||||||||||    
T  8381964 aattgattctacttgaagctagaaattgtagcctctagttctagaattgatttt 8382017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 20026251 - 20026199
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 260  Q
    |||||||||||||||||||||| | ||  ||||||||| ||||||||||||||    
T  20026251 aattgattctacttgaagctagaaattcaagcttttaactctagaattgattt 20026199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 625
Target Start/End: Complemental strand, 28287301 - 28287257
Alignment:
Q  581 tcaactcacttttagttagaatcaatccactcaaaatcaattttg 625  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||    
T  28287301 tcaactcacttttagctagaatcaattcactcaaagtcaattttg 28287257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 36780199 - 36780149
Alignment:
Q  213 attctacttgaagctaggattt-gtagcttttaattctagaattgattttc 262  Q
    ||||||||||||| |||||||| ||||||||| ||| ||||||||||||||    
T  36780199 attctacttgaagttaggattttgtagcttttgattatagaattgattttc 36780149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 40663061 - 40663015
Alignment:
Q  213 attctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||||| ||||||| ||||||||||||| |||| ||||||||||    
T  40663061 attctacttaaagctagtatttgtagcttttgattcaagaattgatt 40663015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 47892472 - 47892422
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||| ||||||| | ||| ||||||| |||||||||||||||||    
T  47892472 tgattctacttaaagctagaaattgaagcttttgattctagaattgatttt 47892422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 213298 - 213265
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||||| |||||||||||||    
T  213298 gttcaactcacttttacatgcatgtatccaaaca 213265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 7790729 - 7790676
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||| || ||||||||| |||  |||||| ||||||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttt 7790676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 10325025 - 10324972
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||| ||||||||||| ||| | ||||||||||| |||||| ||||||||||    
T  10325025 aattgagtctacttgaagatagaaattgtagcttttgattctataattgatttt 10324972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 493
Target Start/End: Original strand, 24587838 - 24587899
Alignment:
Q  432 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttg 493  Q
    |||||||||| ||||||| || || | ||||||||| | |||||||||||||||||| ||||    
T  24587838 gattctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttg 24587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 27849145 - 27849190
Alignment:
Q  216 ctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||| ||| |||||||||| || ||||||||||||||    
T  27849145 ctacttgaagctacgatgtgtagcttttgatactagaattgatttt 27849190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 34387782 - 34387725
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||| ||||||||| | ||| ||| ||||||| |||||| ||||||||||||    
T  34387782 ataattgattttacttgaagttgggaattgcagcttttgattctataattgattttca 34387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 37522997 - 37522944
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||| | ||| || |||| || ||||||||||||||    
T  37522997 aattgattctacttgaagctagaagttggagttttttatcctagaattgatttt 37522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 213554 - 213522
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaac 300  Q
    |||||||||||||||||||||||| ||||||||    
T  213554 gttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 1416237 - 1416205
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||||||||||| ||||||    
T  1416237 ttcaactcacttttacatgaatgtattcaaaca 1416205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 31362279 - 31362239
Alignment:
Q  221 tgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  31362279 tgaagttagaatttgtagcttttgattctagaattgatttt 31362239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 33693020 - 33693072
Alignment:
Q  210 ttgattcta-cttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||    
T  33693020 ttgattctaacttgaagctagaaattgtagcttttgattctataattgatttt 33693072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 34915135 - 34915167
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||||||||||| ||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaaca 34915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 38797717 - 38797661
Alignment:
Q  207 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||| ||||||||| || |||||||| ||| ||| || ||||||||||||||    
T  38797717 taattgattatacttgaagttatgatttgtaacttctaaatcaagaattgattttca 38797661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 40352493 - 40352553
Alignment:
Q  325 aaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacactgccaaaca 385  Q
    ||||||||||| ||||||||||||||| |||| | |||||||| |||| |||  |||||||    
T  40352493 aaaatcaattccacaaaatcaattctatcaaaatcaattctcctcaccgcacaaccaaaca 40352553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 47053471 - 47053503
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaa 299  Q
    |||| ||||||||||||||||||||||||||||    
T  47053471 agtttaactcacttttacatgaatgtatccaaa 47053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 41386902 - 41386852
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgat 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 504
Target Start/End: Original strand, 27571763 - 27571863
Alignment:
Q  403 tggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaa 502  Q
    ||||||||||||| ||||||||||| ||| |||| |||| ||||||| ||  ||  ||||||||||| ||||| ||||| |||||||||| |||||||||    
T  27571763 tggtttcacttctagagggaccaaatttg-attcaagaggtgtagaattgactcctacatgtttgattgctctcgagtataattgattttacctcaagaa 27571861  T
Q  503 tt 504  Q
    ||    
T  27571862 tt 27571863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 38123753 - 38123700
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttt 38123700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 622
Target Start/End: Original strand, 45557457 - 45557523
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 622  Q
    |||||||||| ||| ||||||| | |||||||||||||||| ||||||||| || ||||||||||||    
T  45557457 tatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaatcaatt 45557523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 17111836 - 17111896
Alignment:
Q  189 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattct 249  Q
    |||||||| | ||||| | ||||||||||||||||||||| |||||||||||||| |||||    
T  17111836 tttggttgctttcgagtagaattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 624
Target Start/End: Complemental strand, 33853477 - 33853409
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||||| ||||||| | |||||||||| ||||  ||||||||| |||| ||||||||||||    
T  33853477 tatccaaacataaatcactttagcttcaactcactcttagccagaatcaattcactaaaaatcaatttt 33853409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  209 attgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||| ||||||||||||| ||||||||||||| |||||| ||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 45557363 - 45557468
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 297  Q
    |||||||| | || |||||||| || |||||||||||||||||| ||||||||| | |||          | ||||||||||||||||||||||||||||    
T  45557363 aattgattttgctagaagctagaatctgtagcttttaattctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatcca 45557462  T
Q  298 aacaca 303  Q
    ||||||    
T  45557463 aacaca 45557468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 27571860 - 27571913
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||| ||| | ||| ||||||| |||||||||||||||||    
T  27571860 aattgattctacttgaagttagaaattggagcttttgattctagaattgatttt 27571913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 30182383 - 30182330
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||  | ||||||||||| ||||||||||| |||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaatttt 30182330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 40561775 - 40561742
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaaca 301  Q
    ||||||||||||||||||||||||||||||||||    
T  40561775 gttcaactcacttttacatgaatgtatccaaaca 40561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 12306818 - 12306865
Alignment:
Q  559 ccaaacataaagcactttatcctcaactcacttttagttagaatcaat 606  Q
    ||||||||||| ||||||||| |||||||||||||||  |||||||||    
T  12306818 ccaaacataaatcactttatcttcaactcacttttagccagaatcaat 12306865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 22195862 - 22195917
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||| ||||| |||||| |||||||| ||||| |||||| ||||||||||||    
T  22195862 aattgattttactttaagctatgatttgtaacttttgattctaaaattgattttca 22195917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 29842087 - 29842138
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    |||||||||||||| |||  |||||| || ||||||||||||||||||||||    
T  29842087 aattgattctacttaaagagaggattcgtggcttttaattctagaattgatt 29842138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 12306933 - 12306971
Alignment:
Q  459 acatgtttgatggctcttgagtagaattgattttgcctc 497  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  12306933 acatgtttggttgctcttgagtagaattgattttgcctc 12306971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 620
Target Start/End: Original strand, 15050383 - 15050449
Alignment:
Q  554 tatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaa 620  Q
    ||||||||||||||||  |||||| ||| || ||| |||||| ||||||||||  ||||||||||||    
T  15050383 tatatccaaacataaattactttaccctaaattcatttttagctagaatcaattaactcaaaatcaa 15050449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 242
Target Start/End: Complemental strand, 26984567 - 26984533
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttt 242  Q
    ||||||||||||||||||||| |||||||||||||    
T  26984567 aattgattctacttgaagctaagatttgtagcttt 26984533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 40491576 - 40491677
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||| ||||||||||| || | |||||||||||| ||||||||||||| ||| |          || |||| ||||||||||||||||||||||||||    
T  40491576 aattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatcca 40491675  T
Q  298 aa 299  Q
    ||    
T  40491676 aa 40491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 624
Target Start/End: Complemental strand, 29829362 - 29829294
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||||| |||||||   |||||||| ||||||  ||||||||| || ||| ||||||||||    
T  29829362 tatccaaacataaatcactttacattcaactcatttttagccagaatcaattcattcagaatcaatttt 29829294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 38123836 - 38123769
Alignment:
Q  399 tgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttg 467  Q
    ||||||||| ||||| ||||||  ||||||||| ||||||||||||||||| || || | |||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattg-attctagagatgtagaattgattttaacatgtttg 38123769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 620
Target Start/End: Complemental strand, 40561751 - 40561687
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaa 620  Q
    |||||||||||||| |||||||   |||||||| ||||   |||||||||| |||||||||||||    
T  40561751 tatccaaacataaatcactttactttcaactcaatttttactagaatcaattcactcaaaatcaa 40561687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 6896056 - 6895983
Alignment:
Q  189 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttc 262  Q
    |||||||||||||||| | |||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||    
T  6896056 tttggttgttgtcgagtacaattgattctacctgaagttaggatttgtagcttttgattctagaatttattttc 6895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 301
Target Start/End: Original strand, 4910906 - 4911009
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||          || ||||| |||||||||||||| ||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatcca 4911005  T
Q  298 aaca 301  Q
    ||||    
T  4911006 aaca 4911009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 6654177 - 6654117
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcatacag 268  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6654177 aattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacag 6654117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 765473 - 765422
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  765473 aattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 16540105 - 16540210
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||          || |||| ||||||||||||||| ||||||||||    
T  16540105 aattgattctacttgaagctaggatttgtagcttttgattattgaattgagtttcacttacatatttatagttaaactcacttttacatcaatgtatcca 16540204  T
Q  298 aacaca 303  Q
    ||||||    
T  16540205 aacaca 16540210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 5724717 - 5724664
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  5724717 aattgattctacttgaagctaggatttgtaactttttattctataattgatttt 5724664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 25195451 - 25195348
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||||||||||||||||  |||||||||| |||| |||||| ||||||||||||          |||| |||||||||||||||||| ||||||||||    
T  25195451 aattgattctacttgaagc--ggatttgtagtttttcattctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatcca 25195354  T
Q  298 aacaca 303  Q
    ||||||    
T  25195353 aacaca 25195348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 496
Target Start/End: Complemental strand, 1485339 - 1485238
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctc-acatgtttgatggctcttgagtagaattgattttg 493  Q
    ||||| ||||||||||||||| |||||  ||| || ||||||||||| ||||||| || ||||  ||||||||| | |||||||||||||||| ||||||    
T  1485339 tgtatatttggtttcacttctagaggggtcaatat-ggattctagaggtgtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttg 1485241  T
Q  494 cct 496  Q
    |||    
T  1485240 cct 1485238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 31725758 - 31725828
Alignment:
Q  192 ggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttc 262  Q
    ||||||||||||| | ||||||||||||||||| ||||||||| ||  |||| |||||| |||||||||||    
T  31725758 ggttgttgtcgagtagaattgattctacttgaacctaggatttttaatttttgattctaaaattgattttc 31725828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 7952796 - 7952748
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattg 256  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||    
T  7952796 aatttattctacttgaagcgaggatttgtagcttttgattctagaattg 7952748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 622
Target Start/End: Original strand, 34911034 - 34911100
Alignment:
Q  555 atatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 622  Q
    ||||||||||||||| ||||| | | ||||||||||||||||  |||||||| |||||||||||||||    
T  34911034 atatccaaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaatcaatt 34911100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 3482044 - 3482149
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||||| ||||||||| || |||||||||| ||| ||| |||||||||||||||          || ||||||||| |||||||||||||||||| ||    
T  3482044 aattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattca 3482143  T
Q  298 aacaca 303  Q
    ||||||    
T  3482144 aacaca 3482149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 1485233 - 1485180
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||| |||| | ||| ||||||| |||||||||||||||||    
T  1485233 aattgattctacttgaatctagaaattggagcttttgattctagaattgatttt 1485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 30927041 - 30927094
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||| |||||||||||| |||| ||||||||| ||| |||||||||||||    
T  30927041 aattgattatacttgaagctaagattcgtagcttttgattatagaattgatttt 30927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 624
Target Start/End: Complemental strand, 19601429 - 19601377
Alignment:
Q  572 actttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||| |||||||||| ||||||| ||||||| || ||||||||||||||    
T  19601429 actttatcttcaactcactattagttaaaatcaattcaatcaaaatcaatttt 19601377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 624
Target Start/End: Complemental strand, 28466977 - 28466909
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||||| |||| || | |||||||| ||||||  ||||||||| |||||||||||| ||||    
T  28466977 tatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcattttt 28466909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 624
Target Start/End: Original strand, 34736756 - 34736824
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||||| |||| || | |||||||| ||||||  ||||||||| |||||||||||| ||||    
T  34736756 tatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaatcattttt 34736824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 852528 - 852583
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||| |||||||||||| | |||||| || | |||||||||||||||||    
T  852528 ataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttt 852583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 28052947 - 28053002
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||| ||||||||| ||| |||||||| | ||||||||| ||||||||||||    
T  28052947 aattgattatacttgaagatagaatttgtagttattaattctaaaattgattttca 28053002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 497
Target Start/End: Complemental strand, 5724822 - 5724721
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 494  Q
    ||||||||||||| ||||||| ||||| ||||||||  ||||||||  ||||||| || |||| |||||||||   ||| |   ||||||||||||||||    
T  5724822 tgtatgtttggttccacttctagaggggccaaaatt-aattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgattttgc 5724724  T
Q  495 ctc 497  Q
    |||    
T  5724723 ctc 5724721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 8856376 - 8856410
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||||| |||||||||||||||||||||    
T  8856376 ttcaactcactttcacatgaatgtatccaaacaca 8856410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 579191 - 579126
Alignment:
Q  432 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctc 497  Q
    ||||||||||||||| ||||| || | ||||| ||||| ||||| |||||||| ||| ||||||||    
T  579191 gattctagagatgtaaaactgattttgacatgattgattgctctcgagtagaactgactttgcctc 579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 25195848 - 25195897
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattga 257  Q
    ||||||||||| || || ||||||||| |||||||| |||||||||||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattga 25195897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 26280603 - 26280656
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||| |||||||||||| |||||||| |||| |||| | ||||||||||    
T  26280603 aattgattccacttgaagctagaatttgtagtttttgattccaaaattgatttt 26280656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 617
Target Start/End: Complemental strand, 34026462 - 34026417
Alignment:
Q  572 actttatcctcaactcacttttagttagaatcaatccactcaaaat 617  Q
    |||||||| |||||||||||||||  ||||||||| ||||||||||    
T  34026462 actttatcttcaactcacttttagccagaatcaattcactcaaaat 34026417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 556 - 620
Target Start/End: Original strand, 882778 - 882842
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaa 620  Q
    |||||||||||||| || |||| | |||||||| |||||  |||||||||| |||||||| ||||    
T  882778 tatccaaacataaatcattttaccttcaactcaattttaactagaatcaattcactcaaactcaa 882842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 497
Target Start/End: Complemental strand, 2234341 - 2234305
Alignment:
Q  461 atgtttgatggctcttgagtagaattgattttgcctc 497  Q
    ||||||| | |||||||||||||||||||||||||||    
T  2234341 atgtttggttgctcttgagtagaattgattttgcctc 2234305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 16540241 - 16540289
Alignment:
Q  325 aaaatcaattctacaaaatcaattctaacaaatttaattctccacacca 373  Q
    ||||||||||||||| ||||||||||| |||| | |||||||| |||||    
T  16540241 aaaatcaattctacataatcaattctatcaaaatcaattctccccacca 16540289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 34620955 - 34620987
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||| ||||||||||||||    
T  34620955 ttcaactcacttttacataaatgtatccaaaca 34620987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 34748392 - 34748424
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||||||| ||||||||||||||    
T  34748392 ttcaactcacttttacataaatgtatccaaaca 34748424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 16551959 - 16552053
Alignment:
Q  212 gattctacttgaagctaggatttgtagcttttaattctagaattgattttca--------tacagttcaactcacttttacatgaatgtatccaa 298  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||        || ||||||||||||||||||||||||||||||||    
T  16551959 gattctccttgaagctaggatttgtagtttttagttctagaattgattttcacacaaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 208 - 305
Target Start/End: Complemental strand, 32818457 - 32818350
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt--ca--------tacagttcaactcacttttacatgaatgtatcca 297  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||  ||        || ||||||||| |||||||||||||||||||||    
T  32818457 aattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatcca 32818358  T
Q  298 aacacata 305  Q
    ||||||||    
T  32818357 aacacata 32818350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 395 - 504
Target Start/End: Original strand, 2635056 - 2635164
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 494  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||  |||| || || || | ||||||||||| ||| || ||||||| |||||||||    
T  2635056 tgtatgtttggtttcacttttagagggaccaaaatt-gattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgc 2635154  T
Q  495 ctcaagaatt 504  Q
    ||| ||||||    
T  2635155 ctccagaatt 2635164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 8604710 - 8604654
Alignment:
Q  207 taattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttca 8604654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 55187049 - 55186994
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||    
T  55187049 aattgattctacttgaagttaggatttgtaacttttaattatagaattgattttca 55186994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 9064227 - 9064284
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||||||||||||||||    
T  9064227 ataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttca 9064284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 50061715 - 50061660
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttca 50061660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 49138845 - 49138791
Alignment:
Q  213 attctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 267  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||    
T  49138845 attctacttgaagctaggatttgtaacttttgattctaaaattgatttttataca 49138791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 1616371 - 1616439
Alignment:
Q  190 ttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||||| ||||| | |||||||||||||| ||||||  ||||||||||||| |||||||||||||||    
T  1616371 ttggttgttatcgagtagaattgattctactt-aagctacaatttgtagcttttgattctagaattgatt 1616439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 560 - 624
Target Start/End: Complemental strand, 48045741 - 48045677
Alignment:
Q  560 caaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||| ||||||||| |||||||| ||||||  |||||||||  ||||||||||||||||    
T  48045741 caaacataaatcactttatcttcaactcagttttagccagaatcaatttactcaaaatcaatttt 48045677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 9134608 - 9134663
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||| |||||||||||||  ||||||||||||| ||| |||||||||||||||    
T  9134608 aattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttca 9134663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 35065059 - 35065114
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||| ||||||||||||| ||||||  ||||| |||||||||||||||||    
T  35065059 ataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttt 35065114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 21691299 - 21691194
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    ||||||||| ||||||| ||| ||||||||||||||  || |||||||||||||||          || |||||||| ||||||||||||||| ||||||    
T  21691299 aattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatcca 21691200  T
Q  298 aacaca 303  Q
    ||||||    
T  21691199 aacaca 21691194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 33843584 - 33843637
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaa 449  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||    
T  33843584 tgtatgtttggtttcacttctagagggtccaaaatt-gattctagaggtgtagaa 33843637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 624
Target Start/End: Original strand, 33843801 - 33843871
Alignment:
Q  554 tatatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||||||| |||||||    ||||||||||||||  ||||||||| || ||||||||||||||    
T  33843801 tatatccaaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaatcaatttt 33843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 53713648 - 53713543
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||| ||| |||||||||||| |||||||||||||| |||||| |||||| || ||          || |||||||||||||||||||||||||| ||||    
T  53713648 aattaattttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcacttttacatgaatgtgtcca 53713549  T
Q  298 aacaca 303  Q
    ||||||    
T  53713548 aacaca 53713543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 14596687 - 14596740
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||| | |||| || |||| |||||||||||||||||    
T  14596687 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 14596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 30357510 - 30357563
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||  |||||||||||||| ||| || ||||||||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttt 30357563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 31012826 - 31012773
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||  || ||||||||||||| |||||||| |||||||||||||    
T  31012826 aattgattctactcaaaactaggatttgtagtttttaattttagaattgatttt 31012773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 29779141 - 29779106
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagctttt 243  Q
    |||||||||||||||||||||| |||||||||||||    
T  29779141 aattgattctacttgaagctagaatttgtagctttt 29779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Original strand, 29904120 - 29904198
Alignment:
Q  390 cttaatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgat 469  Q
    |||| ||||||||||||||||||||| ||||  ||| |||| |||||||||||| || || || |||| |||||||||||    
T  29904120 cttagtgtatgtttggtttcacttctagaggatccacaatt-gattctagagatataaaattgattctaacatgtttgat 29904198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 41370095 - 41370044
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||| |||||||| ||| |||| |||||||| ||||||||    
T  41370095 ttgattctacttgaagttaggatttatagttttttattctagacttgatttt 41370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 45011884 - 45011927
Alignment:
Q  220 ttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
T  45011884 ttgaaactgggatttgtagcttttgattctagaattgattttca 45011927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 1048716 - 1048766
Alignment:
Q  209 attgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||||||||| ||| ||| |||| ||||||||||||||| ||||||||    
T  1048716 attgattctacttaaagttagaatttatagcttttaattctataattgatt 1048766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 26617469 - 26617519
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||| || |||||||||| ||| || ||||||||||    
T  26617469 tgattctacttgaagctagaatctgtagcttttgattataaaattgatttt 26617519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 32817540 - 32817486
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagc-ttttaattctagaattgatttt 261  Q
    |||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||    
T  32817540 aattgattctacttgaggctagaatttgtagctttttacttctacaattgatttt 32817486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 303
Target Start/End: Original strand, 35065136 - 35065166
Alignment:
Q  273 actcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||||||||||||||||||    
T  35065136 actcacttttacatgaatgtatccaaacaca 35065166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 504
Target Start/End: Complemental strand, 33560700 - 33560655
Alignment:
Q  459 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 504  Q
    ||||||||| | ||||| ||||||||||||||||||||| ||||||    
T  33560700 acatgtttggttgctctcgagtagaattgattttgcctctagaatt 33560655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 37439143 - 37439196
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||| ||| ||||||||||||| | || ||||||||||||||| ||||||||||    
T  37439143 aatttattatacttgaagctagaaattatagcttttaattctataattgatttt 37439196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 43571476 - 43571529
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||| ||||||||||||  |||| || |||||||||||||| ||||||||    
T  43571476 aattgattatacttgaagctataatttttaacttttaattctagagttgatttt 43571529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 55927787 - 55927754
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||| |||||||||||||||||||||||||||    
T  55927787 gttcaagtcacttttacatgaatgtatccaaaca 55927754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 1616457 - 1616493
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  1616457 agttcaactcatttttacatgaatgtattcaaacaca 1616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 1616523 - 1616563
Alignment:
Q  325 aaaatcaattctacaaaatcaattctaacaaatttaattct 365  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  1616523 aaaatcaattctacaaaatcaattctatcaaaatcaattct 1616563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 5025588 - 5025616
Alignment:
Q  321 aactaaaatcaattctacaaaatcaattc 349  Q
    |||||||||||||||||||||||||||||    
T  5025588 aactaaaatcaattctacaaaatcaattc 5025616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 11271625 - 11271589
Alignment:
Q  208 aattgattcta-cttgaagctaggatttgtagctttt 243  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11271625 aattgattctaacttgaagctaggatttgtagctttt 11271589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 16643981 - 16644029
Alignment:
Q  213 attctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||  |||| ||| |||| |||||||||||||||||    
T  16643981 attctacttgaagctataatttatagattttgattctagaattgatttt 16644029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 45694681 - 45694717
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    |||| |||||| |||||||||||||||||||||||||    
T  45694681 agttgaactcatttttacatgaatgtatccaaacaca 45694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 467
Target Start/End: Complemental strand, 49139027 - 49138956
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttg 467  Q
    ||||||||||||| |||||||  || | |||||||| |||||||||| ||||||| || |||| |||||||||    
T  49139027 tgtatgtttggttccacttctaaagtggccaaaatt-gattctagaggtgtagaattgattctgacatgtttg 49138956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 52342023 - 52342059
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  52342023 agttcaactcatttttacatgaatgtattcaaacaca 52342059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 32927892 - 32927995
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaa 299  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |          || |||||||||||||||||||||||||||||||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaa 32927991  T
Q  300 caca 303  Q
    ||||    
T  32927992 caca 32927995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 4662990 - 4662937
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4662990 aatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttt 4662937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 15677903 - 15677850
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgatttt 15677850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 35494990 - 35495093
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatccaaa 299  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||| |||| |          || ||||||||| |||||||||||||| ||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaa 35495089  T
Q  300 caca 303  Q
    ||||    
T  35495090 caca 35495093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 13384741 - 13384686
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttca 13384686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 267
Target Start/End: Complemental strand, 32994329 - 32994270
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca 267  Q
    ||||||||||||||||||||| ||||| |||||||| | ||||||||||||||| |||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttataca 32994270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 38868496 - 38868551
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||||||| ||||||||||||||  ||||| ||||||||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttca 38868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 44141137 - 44141082
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttca 44141082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 26100233 - 26100128
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 297  Q
    ||||| ||||| |||||||||||||||||||||||| |||||| |||||||||| | |||          ||||||||||||||||||| |||| |||||    
T  26100233 aattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatcca 26100134  T
Q  298 aacaca 303  Q
    ||||||    
T  26100133 aacaca 26100128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 37684403 - 37684508
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||||||||||||||| |||||||||| |||||| |||||| |||||||||| |          || | |||||||||||||||||| ||||||||||    
T  37684403 aattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtatcca 37684502  T
Q  298 aacaca 303  Q
    ||||||    
T  37684503 aacaca 37684508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 556 - 624
Target Start/End: Original strand, 2778605 - 2778673
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||| ||||| ||||||||| ||||||||||||||| |||||||| | |||  ||||||||||||    
T  2778605 tatccaaaaataaatcactttatcttcaactcacttttagctagaatcagttcacataaaatcaatttt 2778673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 38335967 - 38335895
Alignment:
Q  189 tttggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||| ||||| ||||| ||||||||||| | ||||||||| ||||||| |||||| ||| |||||||||||||    
T  38335967 tttgtttgttttcgagtataattgattccagttgaagctaagatttgttgcttttgattttagaattgatttt 38335895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 7244688 - 7244633
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||| ||| ||| ||||| |||| |||||||||||||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattgattttca 7244633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 10367993 - 10368046
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||| |||||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  10367993 aattggttctacttgaggctaggatttgcagcttttgattctagaattcatttt 10368046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 16972149 - 16972046
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatccaaa 299  Q
    |||||| || |||||||||| |||||||| |||||||| ||||||||||||| | |||          |||||| |||||||||||||||||||| ||||    
T  16972149 ttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaa 16972050  T
Q  300 caca 303  Q
    ||||    
T  16972049 caca 16972046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 18355970 - 18355882
Alignment:
Q  174 aattgattttgccattt-tggttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||| ||| | || ||||| ||||| | ||||||||||  |||||||||||||||||  ||||| |||||| ||||||||||    
T  18355970 aattgattttgacatgtatgattgttttcgagtagaattgattctgattgaagctaggatttgtgtcttttgattctaaaattgatttt 18355882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 6027138 - 6027079
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 265  Q
    ||||||||||||||||| || ||   | |||||||||| |||||||||||||||||||||    
T  6027138 ataattgattctacttgtagttaaagtatgtagcttttgattctagaattgattttcata 6027079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 10378283 - 10378232
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||| || ||| ||||||||| |||||||| |||||||||||||    
T  10378283 ttgattctacttaaaactatgatttgtaggttttaattttagaattgatttt 10378232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Complemental strand, 11572547 - 11572488
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 265  Q
    |||||||||| ||||||||||||  |||||||| |||| ||| || ||||||||||||||    
T  11572547 ataattgattatacttgaagctaaaatttgtagattttgattataaaattgattttcata 11572488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 36200219 - 36200164
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||| |||||||| || ||||||| | |||| |||||||||||||||||||    
T  36200219 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttca 36200164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 7644562 - 7644596
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttt 242  Q
    |||||||||||||| ||||||||||||||||||||    
T  7644562 aattgattctacttaaagctaggatttgtagcttt 7644596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 9461554 - 9461520
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||||||| |||||||||||||||||||    
T  9461554 ttcaactcacttttatatgaatgtatccaaacaca 9461520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 41891846 - 41891804
Alignment:
Q  321 aactaaaatcaattctacaaaatcaattctaacaaatttaatt 363  Q
    ||||||||||||||||||||||||||||| | |||| ||||||    
T  41891846 aactaaaatcaattctacaaaatcaattcaatcaaaattaatt 41891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 301
Target Start/End: Complemental strand, 43492255 - 43492221
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaaca 301  Q
    ||||||||| |||||||||||||||||||||||||    
T  43492255 agttcaacttacttttacatgaatgtatccaaaca 43492221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 30098908 - 30098961
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||| || |||||||||| ||||||||||||  ||||||||||| |||||    
T  30098908 aattgattttatttgaagctagaatttgtagctttcgattctagaattaatttt 30098961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 11784725 - 11784697
Alignment:
Q  52 atatgttataagttattttcataagctat 80  Q
    |||||||||||||||||||||||||||||    
T  11784725 atatgttataagttattttcataagctat 11784697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 32101140 - 32101176
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||||||| |||||||||| |||||    
T  32101140 agttcaactcacttttacataaatgtatccacacaca 32101176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 9818730 - 9818785
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9818730 ataattgattctacttgaagctatgatttgtagcttttgattctagaattgatttt 9818785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 18851171 - 18851114
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||    
T  18851171 ataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttca 18851114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 38845441 - 38845496
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttca 38845496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Complemental strand, 6951394 - 6951340
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattt 260  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||    
T  6951394 ataattgattctacttgaagttaggatttgtagcttttgattctataattgattt 6951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 622
Target Start/End: Original strand, 18637375 - 18637441
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatt 622  Q
    |||||||||| ||| |||| ||  ||||||||||||||||||||||||||| |||||||||||||||    
T  18637375 tatccaaacacaaatcactgtactctcaactcacttttagttagaatcaattcactcaaaatcaatt 18637441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 42858106 - 42858211
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcacttttacatgaatgtatcca 297  Q
    |||||||| ||||||||| ||||||||| |||||||||||||| ||||||||||||          || |||||||||||||||||||||||| ||| ||    
T  42858106 aattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattca 42858205  T
Q  298 aacaca 303  Q
    ||||||    
T  42858206 aacaca 42858211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 14299328 - 14299383
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttca 14299383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 2090222 - 2090182
Alignment:
Q  391 ttaatgtatgtttggtttcacttctggagggaccaaaattg 431  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  2090222 ttaatgtttgtttggtttcacttctggagggaccaaaattg 2090182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 39097244 - 39097299
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||||||  ||||||| ||||||||| || ||||||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttca 39097299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 8121547 - 8121633
Alignment:
Q  213 attctacttgaagctaggatttgtagcttttaattctagaattgattttcatacagttcaactcacttttacatgaatgtatccaaa 299  Q
    ||||||||| ||| ||| | ||||||||| | |||||||| ||||||||    | |||||| |||||||||||||||||||||||||    
T  8121547 attctacttaaagttagaaattgtagcttctgattctagagttgatttttcacctgttcaattcacttttacatgaatgtatccaaa 8121633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 624
Target Start/End: Complemental strand, 34250345 - 34250279
Alignment:
Q  558 tccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatcaatttt 624  Q
    |||||||||||| ||||||| | |||||||| || |||| | ||||||| |||||||||||||||||    
T  34250345 tccaaacataaatcactttagcttcaactcaattatagtcaaaatcaattcactcaaaatcaatttt 34250279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 18637282 - 18637335
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttt 18637335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 11648080 - 11648135
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    ||||||||||||||||||||| ||||||||  |||| ||| || ||||||||||||    
T  11648080 aattgattctacttgaagctaagatttgtacattttgattataaaattgattttca 11648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 34250438 - 34250383
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||| ||||| | ||||||||||| |||||| ||||| ||||||    
T  34250438 aattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttca 34250383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 406 - 504
Target Start/End: Original strand, 10898626 - 10898723
Alignment:
Q  406 tttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 504  Q
    |||||||| |||||| | |||||||| ||||||||| ||| ||| |  || | ||||||||| | ||||| ||||| ||||||||||||||| ||||||    
T  10898626 tttcacttttggaggaatcaaaattg-attctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaatt 10898723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 11577637 - 11577603
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||||||||||||||| |||||||||||    
T  11577637 ttcaactcacttttacatgaatgcatccaaacaca 11577603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 22226322 - 22226276
Alignment:
Q  209 attgattctacttgaagctaggatttgtagcttttaattctagaatt 255  Q
    ||||||||||||||||| ||| ||||||||||||| ||| |||||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaatt 22226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 22572491 - 22572442
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattga 257  Q
    |||||||| | ||||||||| ||||||||||||||| ||| |||||||||    
T  22572491 aattgattgttcttgaagctgggatttgtagcttttgattatagaattga 22572442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 504
Target Start/End: Original strand, 29922582 - 29922627
Alignment:
Q  459 acatgtttgatggctcttgagtagaattgattttgcctcaagaatt 504  Q
    ||||||||||| | |||  |||||||||||||||||||||||||||    
T  29922582 acatgtttgattgttctctagtagaattgattttgcctcaagaatt 29922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 36639939 - 36639988
Alignment:
Q  212 gattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||| | | ||||||||| |||||||||||||| ||||    
T  36639939 gattctacttgaagctggaaattgtagcttctaattctagaattgttttt 36639988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 22572593 - 22572557
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattg 431  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  22572593 tgtatgtttggtttcacttctagagggacaaaaattg 22572557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 31906255 - 31906307
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgat 258  Q
    |||||||||| |||||||||||| |||||||| ||||| ||| || |||||||    
T  31906255 ataattgattttacttgaagctatgatttgtaacttttgattatataattgat 31906307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 432 - 504
Target Start/End: Complemental strand, 34250507 - 34250435
Alignment:
Q  432 gattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgcctcaagaatt 504  Q
    |||||||||  ||||||| ||||| | ||||||||| |  |||| |||||||||||||| |||||| ||||||    
T  34250507 gattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaatt 34250435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 449
Target Start/End: Complemental strand, 38845705 - 38845650
Alignment:
Q  393 aatgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaa 449  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||||| ||| |||||||    
T  38845705 aatgtatgtttggttccacttctagagagaccaaaatt-gattctggaggtgtagaa 38845650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 42740973 - 42741028
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  42740973 ataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttt 42741028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 397 - 490
Target Start/End: Complemental strand, 33047742 - 33047650
Alignment:
Q  397 tatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgatt 490  Q
    ||||||||||||| ||||| |||||||||||||| |||| | ||| ||||||| || |||||||||||||||| |||   ||||||||||||||    
T  33047742 tatgtttggtttcgcttctagagggaccaaaatt-gattttggaggtgtagaattgattctcacatgtttgattgctgacgagtagaattgatt 33047650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 259
Target Start/End: Original strand, 43501123 - 43501174
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatt 259  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattgatt 43501174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 2002779 - 2002729
Alignment:
Q  211 tgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||    
T  2002779 tgattctacttgaagctaggatttgtagtttttcattctaaaattgatttt 2002729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 33019243 - 33019138
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcataca----------gttcaactcacttttacatgaatgtatcca 297  Q
    |||||||| || |||||||||| |||||||||||||  || ||||||||||||||| |||          |||||||||||||||||||||||| |||||    
T  33019243 aattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatcca 33019144  T
Q  298 aacaca 303  Q
    ||||||    
T  33019143 aacaca 33019138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 30503207 - 30503260
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||    
T  30503207 aattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttt 30503260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 16518845 - 16518881
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||||||||||||||||||||||||    
T  16518845 agttcaactcacttttacatgaatgtatccaaacaca 16518881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 42982544 - 42982595
Alignment:
Q  210 ttgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    |||||||||||||||||||| | ||||||||||| |||| ||||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttt 42982595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 12037059 - 12037116
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttcata 265  Q
    ||||||||||| ||||| |||  ||||||||||||| |||||| ||||||||||||||    
T  12037059 aattgattctagttgaaactaaaatttgtagcttttgattctacaattgattttcata 12037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 13912770 - 13912890
Alignment:
Q  193 gttgttgtcgaggataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca----------tacagttcaactcactttt 282  Q
    |||||||||||| | |||| ||||||| ||||||||| |||||||  |||| ||||||||||| ||||| |          ||| |||||||||| ||||    
T  13912770 gttgttgtcgagtagaatttattctacatgaagctagaatttgtaattttttattctagaattaatttttacacacaaatttaccgttcaactcattttt 13912869  T
Q  283 acatgaatgtatccaaacaca 303  Q
    |||||| ||||||||||||||    
T  13912870 acatgattgtatccaaacaca 13912890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 12850727 - 12850778
Alignment:
Q  325 aaaatcaattctacaaaatcaattctaacaaatttaattctccacaccacac 376  Q
    ||||||||||||||| |||||||||||  ||| | |||||||||||||||||    
T  12850727 aaaatcaattctacataatcaattctattaaaatcaattctccacaccacac 12850778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 21234612 - 21234577
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagctttt 243  Q
    |||||||||||||||||||||| |||||||||||||    
T  21234612 aattgattctacttgaagctagaatttgtagctttt 21234577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 680306 - 680272
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||||||||||||| ||||||||    
T  680306 ttcaactcacttttacatgaatgtatgcaaacaca 680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 22536146 - 22536200
Alignment:
Q  336 tacaaaatcaattctaacaaatttaattctccacaccacactgccaaacatacgc 390  Q
    |||| ||||||||||| |||| | |||||||||||||||||  ||||||||||||    
T  22536146 tacataatcaattctatcaaaatcaattctccacaccacacacccaaacatacgc 22536200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 618
Target Start/End: Original strand, 30503299 - 30503361
Alignment:
Q  556 tatccaaacataaagcactttatcctcaactcacttttagttagaatcaatccactcaaaatc 618  Q
    |||||||||| ||| || |||| | |||||| ||||||||| ||||||||| |||||||||||    
T  30503299 tatccaaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaatc 30503361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 301
Target Start/End: Complemental strand, 1976877 - 1976848
Alignment:
Q  272 aactcacttttacatgaatgtatccaaaca 301  Q
    ||||||||||||||||||||||||||||||    
T  1976877 aactcacttttacatgaatgtatccaaaca 1976848  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 3352072 - 3352129
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||| ||||||||| | ||| ||| ||||||| |||||| ||||||||||||    
T  3352072 ataattgattttacttgaagttgggaattgcagcttttgattctataattgattttca 3352129  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 15220878 - 15220845
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||||||||| |||||||||||||||||||    
T  15220878 gttcaactcactttaacatgaatgtatccaaaca 15220845  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 31453379 - 31453436
Alignment:
Q  206 ataattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||||||||||||||||||  ||||||  ||||| |||||  ||||||||||||    
T  31453379 ataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattttca 31453436  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 301
Target Start/End: Complemental strand, 40401660 - 40401627
Alignment:
Q  268 gttcaactcacttttacatgaatgtatccaaaca 301  Q
    |||||||| |||||||||||||||||||||||||    
T  40401660 gttcaactgacttttacatgaatgtatccaaaca 40401627  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 43717322 - 43717355
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagctt 241  Q
    |||||||||||||||||||||| |||||||||||    
T  43717322 aattgattctacttgaagctagaatttgtagctt 43717355  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 8800714 - 8800682
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    ||||||||||||||||||||| |||||||||||    
T  8800714 ttcaactcacttttacatgaacgtatccaaaca 8800682  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 9143044 - 9143092
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaacacataccctttttagtc 317  Q
    |||||||||| ||||||||||||||| |||||| | ||| |||||||||    
T  9143044 ttcaactcacatttacatgaatgtattcaaacaaaaaccatttttagtc 9143092  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 11504080 - 11504044
Alignment:
Q  267 agttcaactcacttttacatgaatgtatccaaacaca 303  Q
    ||||||||||||||||||||||||||||  |||||||    
T  11504080 agttcaactcacttttacatgaatgtattaaaacaca 11504044  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 42982615 - 42982643
Alignment:
Q  271 caactcacttttacatgaatgtatccaaa 299  Q
    |||||||||||||||||||||||||||||    
T  42982615 caactcacttttacatgaatgtatccaaa 42982643  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 554 - 606
Target Start/End: Original strand, 43717415 - 43717467
Alignment:
Q  554 tatatccaaacataaagcactttatcctcaactcacttttagttagaatcaat 606  Q
    |||||||||||||||| |||||||  ||| ||| || ||||||||||||||||    
T  43717415 tatatccaaacataaatcactttacactcgactaacatttagttagaatcaat 43717467  T

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Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 31824 - 31879
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgattttca 263  Q
    |||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||    
T  31824 aattgattatacttgaagctaggatttgtagcttttgattattgaattgattttca 31879  T

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Target: scaffold0168; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 497
Target Start/End: Original strand, 31719 - 31820
Alignment:
Q  395 tgtatgtttggtttcacttctggagggaccaaaattggattctagagatgtagaactgtttctcacatgtttgatggctcttgagtagaattgattttgc 494  Q
    ||||||||||||| ||||||| ||| |||||||||| |||||||||| ||||||| || |||| ||||||||| | | | | ||||| |||||||| |||    
T  31719 tgtatgtttggttccacttctagagtgaccaaaatt-gattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgc 31817  T
Q  495 ctc 497  Q
    |||    
T  31818 ctc 31820  T

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Target: scaffold0168; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 31900 - 31932
Alignment:
Q  271 caactcacttttacatgaatgtatccaaacaca 303  Q
    |||||||||||||||| ||||||||||||||||    
T  31900 caactcacttttacataaatgtatccaaacaca 31932  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 220691 - 220638
Alignment:
Q  208 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatttt 261  Q
    ||||||||||||||||||||| | |||| || |||| |||||||||||||||||    
T  220691 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttt 220638  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 14130 - 14098
Alignment:
Q  269 ttcaactcacttttacatgaatgtatccaaaca 301  Q
    ||||||||||||| |||||||||||||||||||    
T  14130 ttcaactcactttcacatgaatgtatccaaaca 14098  T

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