View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713-Insertion-7 (Length: 605)
Name: NF5713-Insertion-7
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Complemental strand, 31952021 - 31951429
Alignment:
| Q |
8 |
gtttagacataaatgtttaataaatttgaacaacttaacacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattat |
107 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
31952021 |
gtttagacataaatgtttaacaaatttgaacagcttaacacaatatgtgggtaaaataaggcttcatagatcttagtgtcgttcaattggaatcaattat |
31951922 |
T |
|
| Q |
108 |
aaatatggttaagataataatgaatgtaaataataatttacaaagaatatattgaaattgaacggggggttcaaattagaattatgtacataccctcaac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||| |
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| T |
31951921 |
aaatatggttaagataataatgaatgtaaataataatgtaaaaagaatatattgaaattgaatgggggattcaagttagaatt-----cataccctcaac |
31951827 |
T |
|
| Q |
208 |
tacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatat |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951826 |
tacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatat |
31951727 |
T |
|
| Q |
308 |
gctgaacaaaaaggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgttttgggagaaaattccagacca |
407 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31951726 |
gctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacca |
31951627 |
T |
|
| Q |
408 |
tttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaatgtaccattggctgtgatggtagcat |
507 |
Q |
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|||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||| |
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| T |
31951626 |
tttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtctgtgatgatagcat |
31951527 |
T |
|
| Q |
508 |
ctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgcggcctttgggga |
605 |
Q |
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||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
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| T |
31951526 |
ctccagctataattccacttggcccacaatctaatagccctttactaatgcaaaaccatttgggttgtgtttcattctgagtatgcggcctttgggga |
31951429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Original strand, 31950574 - 31951144
Alignment:
| Q |
8 |
gtttagacataaatgtttaataaatttgaacaacttaacacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattat |
107 |
Q |
| |
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||||||| |||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
31950574 |
gtttagatataaatgtttaaaaaatttgaacagcttaacacaatatgtaggtaaaataaagcttcacagatcttagtgtcgttcaattggaatcagttat |
31950673 |
T |
|
| Q |
108 |
aaatatggttaagataataatgaatgtaaataataatttacaaagaatatattgaaattgaacggggggttcaaattagaattatgtacataccctcaac |
207 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |||| | |||||| |||||||||| |||| ||||| ||||||||||||||||||||||||| |
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| T |
31950674 |
aaatatggttaggataataatgaatgtaaataataatgtacacaaaatataatgaaattgaagaggggattcaagttagaattatgtacataccctcaac |
31950773 |
T |
|
| Q |
208 |
tacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatat |
307 |
Q |
| |
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||||| || |||||||||||||| |||||| || ||||||||||||||||| ||||||||||||||| ||||||| | ||| ||||| ||||||||||| |
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| T |
31950774 |
tacgacaaaaactatcacagaacaaccacatgtcggatcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatat |
31950873 |
T |
|
| Q |
308 |
gctgaacaaaaaggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgttttgggagaaaattccagacca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |
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| T |
31950874 |
actgaacaaaaaggcagctaaaggagcaaaaccactccagttgggtgggctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacca |
31950973 |
T |
|
| Q |
408 |
tttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaatgtaccattggctgtgatggtagcat |
507 |
Q |
| |
|
||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||| ||||| ||| ||||||| |||||| |
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| T |
31950974 |
gttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagcttgcgcagcagccacatacaacgtaccgttgtgtgtgatgatagcat |
31951073 |
T |
|
| Q |
508 |
ctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgtt |
578 |
Q |
| |
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||| || |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31951074 |
ctccagatataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgtt |
31951144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 8 - 313
Target Start/End: Original strand, 3498062 - 3498361
Alignment:
| Q |
8 |
gtttagacataaatgtttaataaatttgaacaacttaacacaatatgtgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaatt-a |
106 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | || | |
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| T |
3498062 |
gtttagacataaatgtttaaaaaacttgaacagtttaacacaatatg--ggtaaaataaggcttcacagatcttagtgccattcaattgtaattagttta |
3498159 |
T |
|
| Q |
107 |
taaatatggttaagataataatgaatgtaaataataatttacaaagaatatattgaaattgaacggggggttcaaattagaattatgtacataccctcaa |
206 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
3498160 |
taaatatggttaggataataatgaatgtaaataataatgtacaaagaatatattgaaattga-----ggattcaagttagaattatgtacataccctcaa |
3498254 |
T |
|
| Q |
207 |
ctacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacata |
306 |
Q |
| |
|
|||| | | || |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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|
| T |
3498255 |
ctacaacagcagctatcacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactcacata |
3498354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 309 - 603
Target Start/End: Original strand, 3498410 - 3498704
Alignment:
| Q |
309 |
ctgaacaaaaaggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgttttgggagaaaattccagaccat |
408 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
3498410 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
3498509 |
T |
|
| Q |
409 |
ttccatgtctaggagaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaatgtaccattggctgtgatggtagcatc |
508 |
Q |
| |
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|||| |||| ||| ||||| | ||||| ||||||||||||||| |||||||| ||||||||||||| | || ||||| || |||||||| ||||||| |
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| T |
3498510 |
ttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatc |
3498609 |
T |
|
| Q |
509 |
tcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgcggcctttggg |
603 |
Q |
| |
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||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||||| ||||| |||| |||||| | |||||||||| |
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|
| T |
3498610 |
agcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattctgagtaggaggcctttggg |
3498704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 62 - 285
Target Start/End: Original strand, 3510281 - 3510507
Alignment:
| Q |
62 |
aataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaatatattg |
161 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||| |||||||||||||| ||||||| | |||||||||||||||| |||||||||||||||| |
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|
| T |
3510281 |
aataagacttcacagatcttggtgccattcaattggtatcagttataaatatggtttagataatgacgaatgtaaataataatgtacaaagaatatattg |
3510380 |
T |
|
| Q |
162 |
aaattga---acggggggttcaaattagaattatgtacataccctcaactacgaaaacaactatcacagaaccaccacacatcagatcaaaggctacccc |
258 |
Q |
| |
|
||||||| ||||| | |||| | ||||| || | |||||||||||||| | | || ||||||||||||| ||| || |||| |||||| |||| |
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|
| T |
3510381 |
aaattgaaggacgggaagatcaagtcagaatcatatgcataccctcaactatcacagcagctatcacagaaccgtcacgagtcggatcgaaggctgcccc |
3510480 |
T |
|
| Q |
259 |
tgctacaccacaacactgggtagtggg |
285 |
Q |
| |
|
|||||||||| ||||| ||||||||| |
|
|
| T |
3510481 |
tgctacaccagaacaccaggtagtggg |
3510507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 603
Target Start/End: Original strand, 3510582 - 3510862
Alignment:
| Q |
326 |
taaaggagcaaaaccactctagttgggtgggctaagaggtg---ctgaagttgtaatacttgttttgggagaaaattccagaccatttccatgtctagga |
422 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||||||||| | | | | |||||| | ||||||||||||| |||| ||||||| | | ||| |
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|
| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtggcacgccattattgatacttttcttgggagaaaattggagactatttccacgaccaggc |
3510681 |
T |
|
| Q |
423 |
gaaacctcacatacaataacggtagctggattaaaagcttgcacaccggccacatacaatgtaccattggctgtgatggtagcatctcaagctataattc |
522 |
Q |
| |
|
|||||| |||||||||| || ||||||||||| |||| |||||||||||||| ||| ||||| ||| |||||||| ||||||| | | |||||||| |
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|
| T |
3510682 |
ataacctcccatacaataatggcagctggattaacagctggcacaccggccacaagcaaggtaccgttgtctgtgatgatagcatcaccggttataattc |
3510781 |
T |
|
| Q |
523 |
cactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgcggcctttggg |
603 |
Q |
| |
|
|||| | ||| || | |||||||||||||||||||||||||||||| | ||||| |||| |||||| | |||| ||||| |
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|
| T |
3510782 |
cacttggcccgcatgccaatagccctttactagtgcaaaaccatttgtgcagtgttgcattctgagtaggaggccattggg |
3510862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 494 - 600
Target Start/End: Original strand, 2354640 - 2354746
Alignment:
| Q |
494 |
tgtgatggtagcatctcaagctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgc |
593 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| | |
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|
| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggccgtgttgcattctgagtagga |
2354739 |
T |
|
| Q |
594 |
ggccttt |
600 |
Q |
| |
|
||||||| |
|
|
| T |
2354740 |
ggccttt |
2354746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 512 - 602
Target Start/End: Complemental strand, 2354608 - 2354518
Alignment:
| Q |
512 |
agctataattccactagacccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttacattatgagtatgcggcctttgg |
602 |
Q |
| |
|
||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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|
| T |
2354608 |
agctataataccacttggctcacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcattatgagtaagaggcctttgg |
2354518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 22927475 - 22927361
Alignment:
| Q |
55 |
tgggtaaaataaggcttcacagatcttagtgttgttcaattggaatcaattataaatatggttaagataataatgaatgtaaataataatttacaaagaa |
154 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| ||||||||||| | ||||| |||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
22927475 |
tgggtaaaataaggcttcatagatcttaatgtcattcaattggaaatagttatatatatggttaaaataatgatgaatgtaaataataatgtacaaagaa |
22927376 |
T |
|
| Q |
155 |
tatattgaaattgaa |
169 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
22927375 |
tatattaaaactgaa |
22927361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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