View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713_high_1 (Length: 580)
Name: NF5713_high_1
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 6 - 558
Target Start/End: Complemental strand, 32992791 - 32992263
Alignment:
| Q |
6 |
gtcgaagaatatccaactcaagttgatttagattaattagttttattatatgccaatgcccccaatagtgaccttgcttcattgatgagtggtccccact |
105 |
Q |
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| T |
32992791 |
gtcgaagaaaatccaactcaagttgatttagattaattagttttat---atgccaatgcccccaatagtgacctggcttcattggtgagtggtccccact |
32992695 |
T |
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| Q |
106 |
acacaaatgtacaattttagacccaaaacaaaaattgagaattgagctttcaagtccaaatctgtcctgctataggtcatggagctttcaaggtgtccaa |
205 |
Q |
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| T |
32992694 |
acacaaatgtacaattttagacccaaaacaaaaattgagaattgagctttcaagtccaaatctgtcctgctataggtcatggagctttcaaggtgtccaa |
32992595 |
T |
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| Q |
206 |
gtaaaacaatgttttaaaactagaattgattcgattagatttttgagtcatggttcagttgattcaatcattttaactaagtttgaactagataacaaat |
305 |
Q |
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| T |
32992594 |
gtaaaacaatgttttaaaactagaattgattcgattagatttttgagtcatagttcagttggttcaatcattttaactaagtttgaa------aacaaat |
32992501 |
T |
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| Q |
306 |
attttcttcatcttatattgtatatcttatttgtaatatttgtttgtttcatattatttgtctcttactattatcgatgaaatattaattaannnnnnna |
405 |
Q |
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| T |
32992500 |
attttcttcatctta-----tatatcttatttgtaatatttgtttgtctcatattatttgtctcttactattatcgatgaaatattaattaat------- |
32992413 |
T |
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| Q |
406 |
ctaatatattattatttattatacttcaatttttctaactcgttcgtctcataataagtgacatatttgagatgtttataatgaga-cgggagagtaata |
504 |
Q |
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| T |
32992412 |
----tttactattatttattatacttcaatttttctaactcgttcgtctcataataagtgacatatttgagatgcttataatgagatggggagagtaata |
32992317 |
T |
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| Q |
505 |
gataaaaagaagtaaaaagaaaatcacttgaaccaaccgtggataccgattcaa |
558 |
Q |
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| T |
32992316 |
gataaaaagaagtacaaagaaaatcgcttgagccaaccgtggatatcgattcaa |
32992263 |
T |
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