View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5713_high_2 (Length: 562)

Name: NF5713_high_2
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5713_high_2
NF5713_high_2
[»] chr1 (22 HSPs)
chr1 (207-547)||(47459842-47460182)
chr1 (1-185)||(47459672-47459857)
chr1 (2-89)||(28041156-28041243)
chr1 (2-89)||(21472994-21473081)
chr1 (39-85)||(25375866-25375912)
chr1 (2-89)||(24177540-24177627)
chr1 (38-89)||(29169822-29169873)
chr1 (1-81)||(34644556-34644636)
chr1 (49-89)||(45659677-45659717)
chr1 (2-89)||(22346886-22346973)
chr1 (2-89)||(31737352-31737439)
chr1 (33-89)||(2764501-2764557)
chr1 (40-88)||(37200012-37200059)
chr1 (1-89)||(38731599-38731687)
chr1 (2-77)||(2898693-2898768)
chr1 (50-89)||(19035486-19035525)
chr1 (2-89)||(20259826-20259913)
chr1 (47-89)||(15584910-15584952)
chr1 (38-88)||(16500061-16500111)
chr1 (47-89)||(43831605-43831647)
chr1 (47-88)||(42919896-42919937)
chr1 (48-88)||(50314654-50314694)
[»] chr6 (12 HSPs)
chr6 (1-89)||(17249334-17249422)
chr6 (33-89)||(34304518-34304574)
chr6 (38-89)||(33220740-33220791)
chr6 (6-86)||(34554309-34554389)
chr6 (2-89)||(45706-45793)
chr6 (38-89)||(4165951-4166002)
chr6 (2-89)||(4206625-4206712)
chr6 (2-89)||(34415427-34415514)
chr6 (38-88)||(24016364-24016414)
chr6 (38-88)||(29338109-29338159)
chr6 (43-75)||(28009033-28009065)
chr6 (38-89)||(959607-959658)
[»] chr7 (22 HSPs)
chr7 (1-89)||(28517316-28517404)
chr7 (2-88)||(22197977-22198063)
chr7 (2-88)||(22239758-22239844)
chr7 (33-89)||(30216087-30216143)
chr7 (1-89)||(40726509-40726597)
chr7 (2-89)||(19277284-19277371)
chr7 (38-89)||(5825300-5825351)
chr7 (2-89)||(21326867-21326954)
chr7 (2-89)||(24527580-24527667)
chr7 (2-89)||(27521462-27521549)
chr7 (49-89)||(45613871-45613911)
chr7 (49-89)||(48539219-48539259)
chr7 (49-89)||(982987-983027)
chr7 (1-89)||(43856864-43856952)
chr7 (47-85)||(3676675-3676713)
chr7 (39-89)||(42295213-42295263)
chr7 (1-74)||(10905108-10905181)
chr7 (39-80)||(38839352-38839393)
chr7 (49-89)||(4501296-4501336)
chr7 (49-89)||(32584639-32584679)
chr7 (29-89)||(34067891-34067950)
chr7 (49-89)||(34772819-34772859)
[»] chr5 (18 HSPs)
chr5 (1-89)||(37873667-37873755)
chr5 (8-89)||(27336690-27336771)
chr5 (9-89)||(430600-430680)
chr5 (1-89)||(13166939-13167027)
chr5 (2-89)||(38875629-38875716)
chr5 (33-86)||(25663064-25663117)
chr5 (1-89)||(35310438-35310526)
chr5 (38-88)||(35455983-35456033)
chr5 (40-89)||(3114192-3114241)
chr5 (49-89)||(14423716-14423756)
chr5 (33-89)||(33692084-33692140)
chr5 (38-89)||(42921724-42921775)
chr5 (39-89)||(43129562-43129612)
chr5 (29-86)||(14436518-14436575)
chr5 (49-89)||(34335375-34335415)
chr5 (48-89)||(15292055-15292096)
chr5 (38-86)||(16017201-16017249)
chr5 (49-89)||(32269826-32269866)
[»] chr4 (24 HSPs)
chr4 (1-89)||(3329986-3330074)
chr4 (7-89)||(53619582-53619664)
chr4 (2-89)||(31847078-31847165)
chr4 (1-89)||(56462135-56462223)
chr4 (1-88)||(46440919-46441006)
chr4 (1-89)||(50000954-50001043)
chr4 (2-86)||(34107728-34107812)
chr4 (2-89)||(50483225-50483312)
chr4 (33-88)||(55933492-55933547)
chr4 (1-62)||(39001387-39001448)
chr4 (39-89)||(24719962-24720012)
chr4 (38-88)||(25504322-25504372)
chr4 (47-89)||(50462975-50463017)
chr4 (33-89)||(132407-132463)
chr4 (1-89)||(26521478-26521566)
chr4 (2-89)||(7536600-7536687)
chr4 (2-89)||(53098412-53098499)
chr4 (2-88)||(600722-600808)
chr4 (29-83)||(43849383-43849437)
chr4 (49-87)||(48656941-48656979)
chr4 (49-86)||(16957580-16957617)
chr4 (1-66)||(54190903-54190968)
chr4 (49-85)||(6865853-6865889)
chr4 (49-89)||(30940768-30940807)
[»] chr3 (20 HSPs)
chr3 (1-89)||(26772748-26772836)
chr3 (2-89)||(52741541-52741628)
chr3 (6-89)||(7900853-7900936)
chr3 (2-89)||(32546786-32546873)
chr3 (2-89)||(53785700-53785787)
chr3 (7-89)||(38670909-38670991)
chr3 (38-89)||(38146083-38146134)
chr3 (38-89)||(5338670-5338721)
chr3 (38-89)||(38978828-38978879)
chr3 (38-89)||(46940799-46940850)
chr3 (49-86)||(44198805-44198842)
chr3 (49-89)||(37133028-37133068)
chr3 (1-89)||(39583258-39583346)
chr3 (49-89)||(52411920-52411960)
chr3 (38-85)||(4473088-4473135)
chr3 (38-88)||(7502041-7502092)
chr3 (2-89)||(51234607-51234694)
chr3 (38-88)||(49017990-49018040)
chr3 (47-89)||(54508413-54508455)
chr3 (49-89)||(26856791-26856831)
[»] chr8 (17 HSPs)
chr8 (1-89)||(39434657-39434745)
chr8 (1-89)||(38815284-38815372)
chr8 (38-88)||(25021844-25021894)
chr8 (33-89)||(3187991-3188047)
chr8 (38-89)||(10189570-10189621)
chr8 (40-78)||(43824018-43824056)
chr8 (38-82)||(28196219-28196263)
chr8 (2-89)||(500219-500305)
chr8 (38-89)||(24125055-24125106)
chr8 (39-89)||(36004150-36004200)
chr8 (1-81)||(3863307-3863387)
chr8 (49-89)||(35740015-35740055)
chr8 (49-88)||(6592613-6592652)
chr8 (49-88)||(6618322-6618361)
chr8 (39-89)||(42922156-42922206)
chr8 (47-87)||(4073571-4073611)
chr8 (29-88)||(6120983-6121040)
[»] chr2 (14 HSPs)
chr2 (2-89)||(41867937-41868024)
chr2 (1-89)||(28224990-28225078)
chr2 (2-89)||(20142754-20142841)
chr2 (2-88)||(17344629-17344715)
chr2 (49-89)||(19161812-19161852)
chr2 (38-89)||(4413095-4413146)
chr2 (39-89)||(2888544-2888594)
chr2 (47-89)||(9685444-9685486)
chr2 (39-89)||(33612576-33612626)
chr2 (40-85)||(10579812-10579857)
chr2 (50-89)||(23484967-23485006)
chr2 (49-89)||(5532457-5532497)
chr2 (53-89)||(18744983-18745019)
chr2 (49-89)||(34814848-34814888)
[»] scaffold0186 (1 HSPs)
scaffold0186 (38-87)||(10387-10436)
[»] scaffold0493 (1 HSPs)
scaffold0493 (38-89)||(8545-8596)
[»] scaffold0490 (1 HSPs)
scaffold0490 (2-89)||(6325-6412)
[»] scaffold0009 (1 HSPs)
scaffold0009 (38-89)||(103133-103184)
[»] scaffold0148 (1 HSPs)
scaffold0148 (2-89)||(33241-33328)
[»] scaffold1768 (1 HSPs)
scaffold1768 (29-85)||(217-273)
[»] scaffold0031 (1 HSPs)
scaffold0031 (49-89)||(49449-49489)
[»] scaffold0470 (1 HSPs)
scaffold0470 (49-88)||(7640-7679)
[»] scaffold0224 (1 HSPs)
scaffold0224 (47-88)||(18394-18435)


Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 207 - 547
Target Start/End: Original strand, 47459842 - 47460182
Alignment:
Q  207 tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgcatcaaccaacgaggagttaatggatttggaaaattggaaggcgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  47459842 tttgaaggtgtatattaatgttgccgattcacgttatggcaaaacggtatgggtgtatcaaccaacgaggagttaatagatttggaaaattggaaggcgt 47459941  T
Q  307 tgataactaaagttatctccttgactaagaagttaattactattctctctatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47459942 tgataactaaagttatctccttgactaagaagttaattactattctctatatgcgccccttcaaattaaaaacggcatcttctctttcacgcatcttcat 47460041  T
Q  407 cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctc 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47460042 cttctctttcacgctccacgttacaaaatcgttcgttccttaaaaacaagaaatgtgaagcatagacacaaacaacaatggcacaacaacaatcatcctc 47460141  T
Q  507 attccttggtcctgacaccgttgacgacttttacttctctg 547  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  47460142 attccttggtcctgacaccgtagacgacttttacttctctg 47460182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 47459672 - 47459857
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtcnnnnnnn-cgt 99  Q
    ||||| ||||||||||||| ||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||        | |    
T  47459672 ctttggactctatgtagaaggtcaactgcctctgatactaggaagccaaaagtatcaaaagcaaatggtataaaaacatgttcactatcaaaagacgctt 47459771  T
Q  100 tatcatgtctgtcctactgtgcaacaaattaatttataaaattaaatattcaaacaaaacgatactccaatttgaaggtgtatatt 185  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47459772 tatcatatctgtcctactgtacaacaaattaatttataaaattaaatattcaaacaaaacgatactccaatttgaaggtgtatatt 47459857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 28041243 - 28041156
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| || | ||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  28041243 tttgaactctatgtagaaggtcaaccgcctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacctgttgattgtc 28041156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 21472994 - 21473081
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| || | ||||||| |   ||||||||||||||||||||||||||||||||||||||||    
T  21472994 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgcaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 21473081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 25375912 - 25375866
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  25375912 taggaagccaaaagtgtcaatagcaaatggtataaaaacatgttgat 25375866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 24177627 - 24177540
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| || |   |||| |||| ||||||| || ||| |||||||| ||||||||||||||| ||||||||||||    
T  24177627 tttgaactctatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtcaaaaacaaatggtataaaaatatgttgattgtc 24177540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 29169873 - 29169822
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  29169873 ctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 29169822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34644556 - 34644636
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgt 81  Q
    ||||| ||||||||||||| ||||    ||| |||| |||||||||| |||||||||||| |||||||||||||| |||||    
T  34644556 ctttggactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgt 34644636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 45659717 - 45659677
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  45659717 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 45659677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22346886 - 22346973
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||| ||||||| ||||    ||| || ||||||||| || ||||||||||||||||| ||||||||  |||||||||||||    
T  22346886 tttgaactctgtgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtcaaaagcaaaaggtataaacgcatgttgattgtc 22346973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 31737439 - 31737352
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| | || |||| ||  | |||||||||||| |||||||||||||| |||||||||||||    
T  31737439 tttgaactctatgtagaatgtcaatagcctctaatgctagaaaatcgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 31737352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 2764501 - 2764557
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| |||||||||  ||||||||||||| |||||| |||||| |||||||||||||    
T  2764501 tgatgctaggaagctgaaagtgtcaaaagaaaatggcataaaagcatgttgattgtc 2764557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 37200012 - 37200059
Alignment:
Q  40 aggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||||    
T  37200012 aggaagccaaaagtgtaaaaa-caaatggtataaaaacatattgattgt 37200059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38731599 - 38731687
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| || |    ||| || | ||| |||||||||||| |||||||||||| ||||||||  ||||||||||||    
T  38731599 ctttgaactctatgtagaaggttaacaacctctggtgctaagaagccaaaagtttcaaaagcaaattgtataaaagtatgttgattgtc 38731687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 2898693 - 2898768
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaac 77  Q
    |||||||||||||||||| ||||    ||| || | ||||||| || ||||| |||||||||||||||||||||||    
T  2898693 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaaagcaaatggtataaaaac 2898768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 19035486 - 19035525
Alignment:
Q  50 aagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||| ||||||||||||| |||||||||||||    
T  19035486 aagtgtcaaaagtaaatggtataaaagcatgttgattgtc 19035525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 20259913 - 20259826
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||| ||| || |||||||||| |  |||||||||||||||||||||||||||    
T  20259913 tttgaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtcaacaataaatggtataaaaacatgttgattgtc 20259826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 15584910 - 15584952
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||    
T  15584910 caaaaatgtcaaacgcaaatggtatagaaacatgttgattgtc 15584952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 16500061 - 16500111
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||| |||||||||||||||||||| |||||||  |||||| |||||    
T  16500061 ctaggaagtcaaaagtgtcaaaagcaaatagtataaaggcatgttaattgt 16500111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 43831647 - 43831605
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||| |||  ||||||||||||||||||||||||||    
T  43831647 caaaagtgtcacaagtcaatggtataaaaacatgttgattgtc 43831605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 42919896 - 42919937
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  42919896 caaaagtgtcaaaagcagatgacataaaaacatgttgattgt 42919937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 50314694 - 50314654
Alignment:
Q  48 aaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||| ||||||||| ||||||||||||| ||||||||||||    
T  50314694 aaaaatgtcaaaagtaaatggtataaaagcatgttgattgt 50314654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 17249422 - 17249334
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||  ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17249422 ctttggactctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 17249334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 34304518 - 34304574
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  34304518 tgatgctaggaagcccaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 34304574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 33220791 - 33220740
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  33220791 ctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 33220740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 34554389 - 34554309
Alignment:
Q  6 aactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||||||||||||||||||   || | || | |||||||||| || |||||||||| ||||||||||||||||| ||||||    
T  34554389 aactctatgtagaaagtcaatagcatctggtgctaggaagccgaatgtgtcaaaagtaaatggtataaaaacatcttgatt 34554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 45793 - 45706
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| || | ||| ||| || |||||||||||| ||||||| |||||| |||||||||||||    
T  45793 tttgaactctatgtagaaggtcaacagcctctggtgctaagaaaccgaaagtgtcaaaaacaaatggaataaaagcatgttgattgtc 45706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 4166002 - 4165951
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||||||||||||||||||| ||||||| |||||||||||||    
T  4166002 ctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttgattgtc 4165951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 4206712 - 4206625
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| || ||||||||||||||||||| ||||||| |||||| ||||||    
T  4206712 tttgaactctatgtagaaggtcaacaacctctggtgctaggaacccgaaagtgtcaaaagcaaatgatataaaagcatgttcattgtc 4206625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 34415427 - 34415514
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||| ||||| ||||  ||| |||| |  |||||| || |||||||||||| ||||||| |||||| |||||||||||||    
T  34415427 tttgaactctatatagaaggtcaactgcatttggtgttaggaaacctaaagtgtcaaaaacaaatggcataaaagcatgttgattgtc 34415514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 24016364 - 24016414
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||| |||||| | |||| |||||||||||||||||||||||||||||    
T  24016364 ctaggaaaccaaaactatcaatagcaaatggtataaaaacatgttgattgt 24016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 29338159 - 29338109
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||| || |||||||||||||||||||||||| | ||||||||||||    
T  29338159 ctaggaagtcagaagtgtcaaaagcaaatggtataagagcatgttgattgt 29338109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 28009065 - 28009033
Alignment:
Q  43 aagccaaaagtgtcaaaagcaaatggtataaaa 75  Q
    |||||||||||||||||||||||||||||||||    
T  28009065 aagccaaaagtgtcaaaagcaaatggtataaaa 28009033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 959607 - 959658
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||| |||||||| ||||||||||||| ||||||||||||||    
T  959607 ctaggaaaccgaaaatgtcaaaaacaaatggtataaagacatgttgattgtc 959658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28517404 - 28517316
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||  || || |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28517404 ctttggactctatgtagaaggtcaactgtctctgatgctaggaagtcaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 28517316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 22197977 - 22198063
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||||||| ||||    ||| |||| ||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  22197977 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 22239844 - 22239758
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||||||| ||||    ||| |||| ||||||| || |||||| |||||||||||||||||||||||||||||||||    
T  22239844 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaaagcaaatggtataaaaacatgttgattgt 22239758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 30216143 - 30216087
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  30216143 tgatgctaggaaaccgaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 30216087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40726597 - 40726509
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||    ||| |||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||    
T  40726597 ctttggactctatgtagaaggtcaacaacctctgatgctatgaagccgaaagtgtcaaaaacaaatggtataaaaacatgttgattgtc 40726509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 19277284 - 19277371
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  19277284 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 19277371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 5825300 - 5825351
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  5825300 ctaggatgccgaaagtgtcaaaagtaaatggtataaaaacatgttgattgtc 5825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 21326954 - 21326867
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||| || ||||   |||| || | |||||||  | ||||||||||||||||||||||||||| |||||||||||||    
T  21326954 tttgaactctatgtaaaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 21326867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 24527580 - 24527667
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| |  | ||||||| |  ||||||||||||||||||||||||||| |||||||||||||    
T  24527580 tttgaactctatgtagaaggtcaaccgcctctcgtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 24527667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 27521462 - 27521549
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| |||| ||||||| |||||||||||||||| |||| |||||||  |||||||||||||    
T  27521462 tttgaactctatgtagaaggtcaacaacctctgatgctaggaaaccaaaagtgtcaaaagtaaattgtataaatgcatgttgattgtc 27521549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 45613911 - 45613871
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  45613911 aaagtgtcaaaatcaaatggtataaaaacatgttgattgtc 45613871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 48539219 - 48539259
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  48539219 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 48539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 982987 - 983027
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  982987 aaagtatcaaaagcaaatggtataaaagcatgttgattgtc 983027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 43856864 - 43856952
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| ||||    ||| || |  |||||| |||||| |||||||||||||| |||||||  |||||||||||||    
T  43856864 ctttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccaaaaatgtcaaaagcaaattgtataaacgcatgttgattgtc 43856952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 3676675 - 3676713
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  3676675 caaaagtgtcaaaagcaaatggtataaaagcatattgat 3676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 42295263 - 42295213
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||| || ||||| | |||| ||||||||||||||||||||||||||||    
T  42295263 taggaaaccgaaagtataaaaaacaaatggtataaaaacatgttgattgtc 42295213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10905108 - 10905181
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaa 74  Q
    ||||||||||||||||||| ||||     || || | ||||| | |||||||||||||||||||||||||||||    
T  10905108 ctttgaactctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtcaaaagcaaatggtataaa 10905181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 38839352 - 38839393
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatg 80  Q
    ||||||| ||||||||||||||||||||  ||||||||||||    
T  38839352 taggaagtcaaaagtgtcaaaagcaaattatataaaaacatg 38839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 4501296 - 4501336
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||  ||||||| |||||||||||||    
T  4501296 aaagtgtcaaaagcaaattatataaaagcatgttgattgtc 4501336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 32584639 - 32584679
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||| ||||| ||| |||||||||    
T  32584639 aaagtgtcaaaagcaaatggtgtaaaagcatcttgattgtc 32584679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 34067950 - 34067891
Alignment:
Q  29 cctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||| ||||||||| ||||||||||||||  ||||||| ||| ||| ||||||||||||    
T  34067950 cctttggtactaggaaaccaaaagtgtcaaatacaaatggcatagaaa-atgttgattgtc 34067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 34772819 - 34772859
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  34772819 aaagtttcaaaagcaaatggtataaaaacatattaattgtc 34772859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 37873755 - 37873667
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| ||||    ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37873755 ctttgaactctatgtagaaggtcaacaacctctggtgctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 37873667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 27336690 - 27336771
Alignment:
Q  8 ctctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||| ||||  ||||| |||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  27336690 ctctatgtagaaggtcaactgcctctgatgctaggaagccacaagtgtcaaaagcaaatggtataaaagtatgttgattgtc 27336771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 430600 - 430680
Alignment:
Q  9 tctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||| ||||  ||||| |||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  430600 tctatgtagaaggtcaactgcctctgatgctatgaagacaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 430680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 13167027 - 13166939
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||   | || |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  13167027 ctttggactctatgtagaaggtcaacagtctctgatgctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 13166939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 38875629 - 38875716
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||| |||||| |||||  |||| || | |||||||||  |||||||||||| ||||||||| ||||||||||||||||||    
T  38875629 tttgaactctacgtagaaggtcagcagcctctggtgctaggaagctgaaagtgtcaaaaacaaatggtacaaaaacatgttgattgtc 38875716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 25663117 - 25663064
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  25663117 tgatgctaggaagctgaaagtgtcaaaagcaaatggtataaaaacatgttgatt 25663064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 35310438 - 35310526
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| || |   |||| |||| | |||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  35310438 ctttggactctatgtagaaggttaacagcctctgatgccaggaagccgaaagtgtcaaaagcagatggtataaaagcatgttgattgtc 35310526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 35455983 - 35456033
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||||||    
T  35455983 ctaggaagccaaaattgtcaaaagcaaaaggtataaaagcatgttgattgt 35456033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 3114241 - 3114192
Alignment:
Q  40 aggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  3114241 aggaaaccaaaagtgtcaaaaacaaatggtataaaaacatgttgactgtc 3114192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 14423716 - 14423756
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  14423716 aaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 14423756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 33692140 - 33692084
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| ||| |||||| |||||||||||||||||||||| |||| |||||||||||||    
T  33692140 tgatgctaagaagccgaaagtgtcaaaagcaaatggtacaaaagcatgttgattgtc 33692084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 42921724 - 42921775
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||||||||| ||||||||||||||||| |||||||||||||    
T  42921724 ctaggaaaccgaaagtgtcataagcaaatggtataaaagcatgttgattgtc 42921775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 43129562 - 43129612
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  43129562 taggaaaccgaaaatgtcaaaagcaaatggtagaaaaacatgttgattgtc 43129612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 14436518 - 14436575
Alignment:
Q  29 cctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||||| | |||||||| |||| ||||||||| |||||| ||||||||||||||||||    
T  14436518 cctttgttgctaggaagtcaaaggtgtcaaaaacaaatgatataaaaacatgttgatt 14436575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 34335375 - 34335415
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  34335375 aaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 34335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 15292096 - 15292055
Alignment:
Q  48 aaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||| |||| ||||| ||||||||||||||||||||||    
T  15292096 aaaagtgtaaaaaacaaattgtataaaaacatgttgattgtc 15292055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 16017201 - 16017249
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||||||||||||||| ||||| |||||| |||| ||| ||||||||||    
T  16017201 ctaggaagccaaaagtatcaaacgcaaatagtattaaatcatgttgatt 16017249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 32269866 - 32269826
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||||||||||| | |||||||||||    
T  32269866 aaagtatcaaaagcaaatggtataaaagcgtgttgattgtc 32269826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3329986 - 3330074
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||  ||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  3329986 ctttggactctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatagtataaaagcatgttgattgtc 3330074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 53619582 - 53619664
Alignment:
Q  7 actctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||| ||||  ||||| |||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  53619582 actctatgtagaaggtcaactgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 53619664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 31847078 - 31847165
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| ||||||||||||| ||||   || | |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31847078 tttggactctatgtagaaggtcaaccgcttctgatgctaggaagccaaaagtgtcaaaagcaaatggtaaaaaaacatgttgactgtc 31847165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 56462223 - 56462135
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| ||||    ||| || | ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  56462223 ctttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtctaaaacaaatggtataaaaacatgttgattgtc 56462135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 46441006 - 46440919
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||| ||||||||||||| |||||  || | |||| |||||||||| ||||||||||||||||||| ||||||||| |||| |||||    
T  46441006 ctttggactctatgtagaaggtcagcagcttctgatgctaggaagccgaaagtgtcaaaagcaaatgatataaaaacgtgttaattgt 46440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 50001043 - 50000954
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggta-taaaaacatgttgattgtc 89  Q
    ||||| ||| ||||||||| ||||  ||||| |||| |||| |||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  50001043 ctttggactatatgtagaaggtcaactgcctctgatgctagaaagccaaaagtgtcaaaagcaaattgtattaaaagcatgttgattgtc 50000954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 34107812 - 34107728
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||||||||||||||||| ||||   |||| || | |||||||  | |||||||||||| |||||||||||||||||||||||||    
T  34107812 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaatcgaaagtgtcaaaaacaaatggtataaaaacatgttgatt 34107728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 50483312 - 50483225
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| || |||||||| |||||||||||||||||| |||||||||||||    
T  50483312 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaaagcaaatggtataaaatcatgttgattgtc 50483225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 55933547 - 55933492
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  55933547 tgatgctaggaagtcgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 55933492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39001387 - 39001448
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagc 62  Q
    ||||| ||||||||||||| ||||  ||||| |||| |||||||||||||||||||||||||    
T  39001387 ctttggactctatgtagaaggtcaactgcctctgatcctaggaagccaaaagtgtcaaaagc 39001448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 24719962 - 24720012
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| |||||||||||||  |||||| |||||||||||||||||||||    
T  24719962 taggaagacaaaagtgtcaaacacaaatgatataaaaacatgttgattgtc 24720012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 25504322 - 25504372
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| ||||||    
T  25504322 ctaggaaaccaaaaatgtcaaaagcaaacggtataaaaacatgtcgattgt 25504372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 50463017 - 50462975
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  50463017 caaaagtgtcaaaagcaaatggtatgaaagcatgttgattgtc 50462975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 132407 - 132463
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| |||||| || ||||||| |||| |||||||||||||| |||||||||||||    
T  132407 tgatattaggaaaccgaaagtgtaaaaaacaaatggtataaaagcatgttgattgtc 132463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26521478 - 26521566
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||| ||||||||| ||||   |||| || | ||||||| ||||||||||  |||||| ||| ||||||| |||||||||||||    
T  26521478 ctttgaactgtatgtagaaggtcaacagcctctggtgctaggaaaccaaaagtgttgaaagcatatgatataaaagcatgttgattgtc 26521566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 7536687 - 7536600
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| |  ||| |||||||| ||||| ||||||||||||||||||||||    
T  7536687 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaactgaaattgtcaaaaacaaattgtataaaaacatgttgattgtc 7536600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 53098412 - 53098499
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| || |    ||| |||| ||||||| |||||| ||||||||| ||| |||  ||||||||||||||||||    
T  53098412 tttgaactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtcaaaaggaaacggttcaaaaacatgttgattgtc 53098499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 600808 - 600722
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||||||| ||||    ||| || |  |||||| || |||||| |||||||||||||||||||| |||||| |||||    
T  600808 tttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaagtgacaaaagcaaatggtataaaagcatgttaattgt 600722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 43849437 - 43849383
Alignment:
Q  29 cctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttg 83  Q
    |||||| | ||||||||||||||||||||||  ||||| |||||||| |||||||    
T  43849437 cctttggttctaggaagccaaaagtgtcaaacacaaatagtataaaagcatgttg 43849383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 48656979 - 48656941
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattg 87  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  48656979 aaagtgtcaaaaacaaatggtataaaaacattttgattg 48656941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 16957580 - 16957617
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    |||||||||||||||||||||||| || ||||||||||    
T  16957580 aaagtgtcaaaagcaaatggtatataagcatgttgatt 16957617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54190968 - 54190903
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaat 66  Q
    ||||||||||||||| ||| ||||    ||| ||||||||| ||| ||||||||||||||||||||    
T  54190968 ctttgaactctatgtggaaggtcaacaacctctgatactagaaagtcaaaagtgtcaaaagcaaat 54190903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 6865889 - 6865853
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  6865889 aaagtgtcaaaagcaaatgatataaaagcatgttgat 6865853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 30940807 - 30940768
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  30940807 aaagtgtcaaaagcaa-tggtataaaagcatgttgattgtc 30940768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26772748 - 26772836
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||| ||||| ||||  ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26772748 ctttgtactctatatagaaggtcaactgcctctgatgctaggaagccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 26772836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 52741628 - 52741541
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  52741628 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 52741541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 7900853 - 7900936
Alignment:
Q  6 aactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||| ||||    ||| |||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||    
T  7900853 aactctatgtagaaggtcaacaacctctgatgctaggaagccgaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 7900936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 32546786 - 32546873
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   ||||||| | ||||||| |  |||||||||||||||||||||||||||  ||||||||||||    
T  32546786 tttgaactctatgtagaaggtcaacagcctttggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagtatgttgattgtc 32546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 53785700 - 53785787
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || | ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  53785700 tttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 53785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 38670991 - 38670909
Alignment:
Q  7 actctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||| ||||   |||| |||| |||| |||||||||||||||||| ||||| |||||||| |||||||||||||    
T  38670991 actctatgtagaaggtcatccgcctctgatgctagaaagccaaaagtgtcaaaaacaaattgtataaaagcatgttgattgtc 38670909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 38146083 - 38146134
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||    
T  38146083 ctaggaagtcaaaagtgtcaaatgtaaatggtataaaaacatgttgattgtc 38146134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 5338670 - 5338721
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  5338670 ctaggaagccgaaagtgtcaaaagcaaattgtataaaagcatgttgactgtc 5338721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 38978879 - 38978828
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| ||||||||||||||| ||||| |||||||||||| |||||||||    
T  38978879 ctaggaaaccaaaagtgtcaaaaacaaatagtataaaaacatattgattgtc 38978828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 46940850 - 46940799
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||| | |||||||||||||| |||||||||||||| |||||||||||||    
T  46940850 ctaggacgtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 46940799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 44198805 - 44198842
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgatt 86  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44198805 aaagtgtcaaaagcaaatggtataaaagcatgttgatt 44198842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 37133068 - 37133028
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  37133068 aaagtgtaaaaaacaaatggtataaaaacatgttgattgtc 37133028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39583346 - 39583258
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||| |||| ||||    ||| |||| ||||||| || |||||||| ||| |||||| ||||||| |||||||||||||    
T  39583346 ctttgaactctatgcagaaggtcaacaacctatgatgctaggaaaccgaaagtgtcgaaaacaaatgatataaaagcatgttgattgtc 39583258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 52411960 - 52411920
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  52411960 aaagtgtcaaaagcaaatggaataaaagcatgttgattgtc 52411920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 4473088 - 4473135
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    |||||||||| |||||||||||| ||||| |||||||||||| |||||    
T  4473088 ctaggaagccgaaagtgtcaaaaacaaatagtataaaaacatattgat 4473135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 7502092 - 7502041
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtata-aaaacatgttgattgt 88  Q
    ||||||| |||||| ||||||||| |||||||||| ||||||||||||||||    
T  7502092 ctaggaaaccaaaaatgtcaaaagaaaatggtataaaaaacatgttgattgt 7502041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 51234607 - 51234694
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| |||| |||| ||| | ||||||||||||  ||||||||||||| ||||||| |||||    
T  51234607 tttgaactctatgtagaaggtcaacaacctctgatgctagaaagtcgaaagtgtcaaaaataaatggtataaaagcatgttggttgtc 51234694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 49017990 - 49018040
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||| || ||||||| ||||  ||||||||||||||||||||||||||    
T  49017990 ctaggaaaccgaaagtgtaaaaaaaaaatggtataaaaacatgttgattgt 49018040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 54508455 - 54508413
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||    
T  54508455 caaaaatgtcaaaagcaaatgatataaaaacatgttaattgtc 54508413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 26856831 - 26856791
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| |||||||||| ||||||||||| |||||||||||||    
T  26856831 aaagcgtcaaaagcagatggtataaaagcatgttgattgtc 26856791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39434657 - 39434745
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| |||||||||||||  ||| |||||| |||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||    
T  39434657 ctttggactctatgtagaagatcaaatgcctctgatgctaggaagtcaaaagtgtcaaaaacaaatggtataaaagcatgttgattgtc 39434745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 38815284 - 38815372
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| ||||    ||| || | |||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  38815284 ctttgaactctatgtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 38815372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 25021894 - 25021844
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  25021894 ctaggaagccaaaaatgtcaaaagaaaatggtataaaaacatgttgattgt 25021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 3187991 - 3188047
Alignment:
Q  33 tgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||| |||||||||| ||||| ||||||||||||||||||||| |||||||||||||    
T  3187991 tgatgctaggaagccgaaagtttcaaaagcaaatggtataaaagcatgttgattgtc 3188047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 10189570 - 10189621
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  10189570 ctaggaagccaaaaatgtcaaatgcaaatgatataaaaacatgttgattgtc 10189621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 43824018 - 43824056
Alignment:
Q  40 aggaagccaaaagtgtcaaaagcaaatggtataaaaaca 78  Q
    |||||||||||||||||||||||||||||||||||||||    
T  43824018 aggaagccaaaagtgtcaaaagcaaatggtataaaaaca 43824056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 28196219 - 28196263
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgtt 82  Q
    |||||||| |||||||||||||| |||||||||||||||||||||    
T  28196219 ctaggaagacaaaagtgtcaaaaacaaatggtataaaaacatgtt 28196263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 500219 - 500305
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| | || |  ||| | |||||||||| || ||| ||||||||| ||||||||||||| |||||||||||||    
T  500219 tttgaactctatgtagaaggcca-acacctctcatactaggaaaccgaaaatgtcaaaagtaaatggtataaaagcatgttgattgtc 500305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 24125055 - 24125106
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||  ||||| ||||||||||||||||||||||| |||||||||||||    
T  24125055 ctaggaaatcaaaattgtcaaaagcaaatggtataaaagcatgttgattgtc 24125106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 36004150 - 36004200
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  36004150 taggaagtcaaaaatgtcaaatgtaaatggtataaaaacatgttgattgtc 36004200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3863307 - 3863387
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgt 81  Q
    ||||||||||||||||||| ||||    ||| || | |||||||||||||||||||| | |||||||| |||||| |||||    
T  3863307 ctttgaactctatgtagaaggtcaataacctctggtcctaggaagccaaaagtgtcacatgcaaatggaataaaagcatgt 3863387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 35740055 - 35740015
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  35740055 aaagtgtcaaaagctaattgtataaaaacatgttgattgtc 35740015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 6592613 - 6592652
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  6592613 aaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 6592652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 6618322 - 6618361
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  6618322 aaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 6618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 42922206 - 42922156
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||| ||||||| | ||||| ||| |||||||||    
T  42922206 taggaagccaaaagtgtcaaaggcaaatgatttaaaagcattttgattgtc 42922156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 4073571 - 4073611
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattg 87  Q
    ||||||||||||| |||||| |||||||| |||||||||||    
T  4073571 caaaagtgtcaaatgcaaattgtataaaatcatgttgattg 4073611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 6120983 - 6121040
Alignment:
Q  29 cctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||| |||||| || ||||||||||||||  || ||| ||||||||||||||||||||    
T  6120983 cctttggtactagaaaaccaaaagtgtcaaa--cacatgctataaaaacatgttgattgt 6121040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 41868024 - 41867937
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| || | ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  41868024 tttgaactctatgtagaaggtcaacagcctctggtgctaggaacccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 41867937  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28224990 - 28225078
Alignment:
Q  1 ctttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||| ||||||||||||| ||||    ||| |||  |||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  28224990 ctttggactctatgtagaaggtcaacaacctctgaagctaggaagccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 28225078  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 20142841 - 20142754
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||| || ||||    |||||||| |||| || |||||||||||||||| ||||||||||||| |||||||||||||    
T  20142841 tttgaactctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaaagaaaatggtataaaagcatgttgattgtc 20142754  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 17344629 - 17344715
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    |||||||||||||||||| ||||   |||| || | ||||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  17344629 tttgaactctatgtagaaggtcaacagcctatggtgctaggaaactgaaagtgtcaaaagcaaatggtataaaagcatgttgattgt 17344715  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 19161852 - 19161812
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19161852 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 19161812  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 4413146 - 4413095
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  4413146 ctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 4413095  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 2888544 - 2888594
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||||    
T  2888544 taggaagccaaaagtgtcataaacgaatggtataaaaacatgttgattgtc 2888594  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 9685486 - 9685444
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  9685486 caaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 9685444  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 33612626 - 33612576
Alignment:
Q  39 taggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||||||  ||||| |||||||| |||||||||||||    
T  33612626 taggaagccaaaagtgtcaaatacaaattgtataaaatcatgttgattgtc 33612576  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 10579857 - 10579812
Alignment:
Q  40 aggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||    
T  10579857 aggaagccaaaagtgtcaaacgcaaatggtataaaggcatgttgat 10579812  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 23485006 - 23484967
Alignment:
Q  50 aagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  23485006 aagtgtcaaaaacaaatggtataaaagcatgttgattgtc 23484967  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 5532457 - 5532497
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||| |||| |||||||| |||||||||||||    
T  5532457 aaagtgtcaaaagtaaatagtataaaagcatgttgattgtc 5532497  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 18745019 - 18744983
Alignment:
Q  53 tgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||||||||  ||||||||||||    
T  18745019 tgtcaaaagcaaatggtataaaagtatgttgattgtc 18744983  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 34814888 - 34814848
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||| |||||||||||||||||| ||| |||||||||    
T  34814888 aaagtgtcgaaagcaaatggtataaaagcatattgattgtc 34814848  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 10387 - 10436
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattg 87  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  10387 ctaggaagccacaagtgtcaaaagcaaatggtataaaagcatgttgattg 10436  T

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Target: scaffold0493 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 8596 - 8545
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| |||||||||| ||| |||||||||||||||||||||||||||||    
T  8596 ctaggaaaccaaaagtgttaaacgcaaatggtataaaaacatgttgattgtc 8545  T

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Target: scaffold0490 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 6325 - 6412
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||   |||| || | ||||||| |  |||||||||||||||||||||||| || |||||||||||||    
T  6325 tttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgtcaaaagcaaatggtatagaagcatgttgattgtc 6412  T

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Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 103133 - 103184
Alignment:
Q  38 ctaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||||||    
T  103133 ctaggaaaccgaaagtgtcaaaagcaaatggtataaaagcatgttgattgtc 103184  T

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Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 33241 - 33328
Alignment:
Q  2 tttgaactctatgtagaaagtcagatgcctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    |||||||||||||||||| ||||    ||| || |  |||||| || ||| ||||||||| |||||||||||||||||||||||||||    
T  33241 tttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaaagtaaatggtataaaaacatgttgattgtc 33328  T

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Target: scaffold1768 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 273 - 217
Alignment:
Q  29 cctttgatactaggaagccaaaagtgtcaaaagcaaatggtataaaaacatgttgat 85  Q
    |||||| |||||| || ||||||||||||||  |||||||||||||| |||||||||    
T  273 cctttggtactagaaaaccaaaagtgtcaaacacaaatggtataaaagcatgttgat 217  T

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Target: scaffold0031 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 49449 - 49489
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgtc 89  Q
    ||||||||||||||||||||||||||| || ||||||||||    
T  49449 aaagtgtcaaaagcaaatggtataaaagcacgttgattgtc 49489  T

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Target: scaffold0470 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 7640 - 7679
Alignment:
Q  49 aaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  7640 aaagtgtcaaaagcaaatggtttaaaatcatgttgattgt 7679  T

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Target: scaffold0224 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 18435 - 18394
Alignment:
Q  47 caaaagtgtcaaaagcaaatggtataaaaacatgttgattgt 88  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  18435 caaaagtgtcaaaagcagatgacataaaaacatgttgattgt 18394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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