View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713_low_3 (Length: 535)
Name: NF5713_low_3
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 3679659 - 3679978
Alignment:
| Q |
1 |
tgaaggagataatttaagtaaacagtaattttgttataagctttatgccaagaatcatgttataacagatagcagaatgaaggtataaatcaacaagtca |
100 |
Q |
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| T |
3679659 |
tgaaggagataatttaagtaaacagtaattttgttata-gctttatgccaagaatcatgttataacagatagcagaatgaagttataaatcaacaagtca |
3679757 |
T |
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| Q |
101 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagcta--------------taaaat |
186 |
Q |
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| T |
3679758 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaacttttgaaaatatccaaagtaacaacataagctatatcacgatcacattaaaat |
3679857 |
T |
|
| Q |
187 |
cttttaatttcaatgcatgataacatactcagcgacgaattcagctttcgacaggaggtggccagaataagctgaaatattcaacatcatcagacataag |
286 |
Q |
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| T |
3679858 |
cttttaatttcaatgcatgataacatactcagtgacgaattcagctttcgacaggaggtggccagaataagctgaaatattcagcatcatcagacataag |
3679957 |
T |
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| Q |
287 |
cgaaatccaaccttcatccaa |
307 |
Q |
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| T |
3679958 |
cgaaatccgaccttcatccaa |
3679978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 408 - 518
Target Start/End: Original strand, 3680156 - 3680264
Alignment:
| Q |
408 |
atataaccagtatgtgagatttcttgcatatacattttgctattgggatcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaatt |
507 |
Q |
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| T |
3680156 |
atataaccagtatgtga--tttcttgcatatacattttgctattgggatcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaatt |
3680253 |
T |
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| Q |
508 |
atgtctcagct |
518 |
Q |
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| T |
3680254 |
atgtctcagct |
3680264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3703742 - 3703824
Alignment:
| Q |
1 |
tgaaggagataatttaagtaaacagtaattttgttataagctttatgccaagaatcatg-ttataacagatagcagaatgaag |
82 |
Q |
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| T |
3703742 |
tgaaggagataatttaagtaaacggtaattttgttataagctttatgccaaaaatcatgtttataacagatagcagaatgaag |
3703824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 3695475 - 3695604
Alignment:
| Q |
181 |
taaaatcttttaatttcaatgcatgataacatactcagcgacgaattcagctttcgacagga-----ggtggccagaataagctgaaatattcaacatca |
275 |
Q |
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| T |
3695475 |
taaaatcttttaat--caatgcatgataacatactcaatgacgatttcagctttcgacacaatgcaaggtggccagaacaagttggaatattcaggatca |
3695572 |
T |
|
| Q |
276 |
tcagacataagcgaaatccaaccttcatccaa |
307 |
Q |
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| T |
3695573 |
ttagacataagcgaaatcctaccttcatccaa |
3695604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 3676074 - 3676118
Alignment:
| Q |
84 |
tataaatcaacaagtcaaatgaaggaacttttgaagatattgaag |
128 |
Q |
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| T |
3676074 |
tataaatcaacaagtcaaatgaaggaacttatgaagatattgaag |
3676118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 3695287 - 3695326
Alignment:
| Q |
84 |
tataaatcaacaagtcaaatgaaggaacttttgaagatat |
123 |
Q |
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| T |
3695287 |
tataaatcaacaagtcaaatgaaggaacttatgaagatat |
3695326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 455 - 511
Target Start/End: Original strand, 3687942 - 3687996
Alignment:
| Q |
455 |
atcagtgctgattgatgagtgtgatgtaactctttccttaagcatatgaaattatgt |
511 |
Q |
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| T |
3687942 |
atcagtgatgattgatgaatg--atgtaactctgtccttaagcatatgaaattatgt |
3687996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 3650449 - 3650497
Alignment:
| Q |
101 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaactt |
149 |
Q |
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| T |
3650449 |
aatgaaggaacttaggaagatattgaagtccagatacggatttcaactt |
3650497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 3707062 - 3707014
Alignment:
| Q |
101 |
aatgaaggaacttttgaagatattgaagtccacacacggatttcaactt |
149 |
Q |
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| T |
3707062 |
aatgaaggaacttaggaagatattgaagtccagatacggatttcaactt |
3707014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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