View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5713_low_4 (Length: 436)
Name: NF5713_low_4
Description: NF5713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5713_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 40433022 - 40432603
Alignment:
| Q |
7 |
cttctagttttgcaaaataagcatgtactgtttcatcatcacgttcactgtaaagccattcctcagtctctagcaggctcctggatatgccatccttctc |
106 |
Q |
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| T |
40433022 |
cttctagttttgcaaaataagcatgtactgtttcatcatcacgttcactgtaaagccattcctcagtctctagcaggctcctggatatgccatccttctc |
40432923 |
T |
|
| Q |
107 |
ttgttcacttgcgaattttcggtattcgtttaagagctattcataaaaatgcacaaattattaaatgccaagccatcaggaaatatagaacatacacaca |
206 |
Q |
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| T |
40432922 |
ttgttcacttgcgaattttcggtattcgtttaagagctattcataaaaatgcacaaattattaaatgccaagccatcaggaaatatagaacatacacaca |
40432823 |
T |
|
| Q |
207 |
taaagccgtgtattaaataatttgcataaaggataaagaatgatagagattttaatttcatttcatatgcagatttgatacaaatcagaataaaacaata |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40432822 |
taaagccgtgtattaaataattggcataaaggataaagaaggatagagattttaatttcatttcatatgcagatttgatacaaagcagaataaaacaata |
40432723 |
T |
|
| Q |
307 |
tccctagacaccagtttcactatcttagtttaaccttacatttattcatgaatcagaacagccaagtccctgaaaataaattcatcattgaatatacaga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40432722 |
tccctagacaccagtttcactatcttagtttaaccttacatttattcatgaatcagaacagccaagtccctgaaaataaattcatcattgaatatacaga |
40432623 |
T |
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| Q |
407 |
agccttttctcattctcatt |
426 |
Q |
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| T |
40432622 |
agccttttctcattctcatt |
40432603 |
T |
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