View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714-Insertion-1 (Length: 995)
Name: NF5714-Insertion-1
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 21819322 - 21818934
Alignment:
| Q |
8 |
gcttgattgtgtatgatggttctggtgaaggtagaccaataactacgccacaagattcgacaattgttcggtccatgcttgaaaactatgagcaacaaaa |
107 |
Q |
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| T |
21819322 |
gcttgattgtatatgatggttctggtgaaggtagaccaataactatgccacaagattcgacaattgttcggtccatgcttgaaaactatgagcaacaaaa |
21819223 |
T |
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| Q |
108 |
gattgagggtataactacaaagatctttgatgtgaaggactattttgcaaataagaagaataagattgaaggtgagatttccaaaatgcagaaagagatt |
207 |
Q |
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| T |
21819222 |
gattgagagtataactacaaagatctttgatgtgaaggactattttgcaaataagaagaataagattgaaggtgagatttccaaagtgcagaaagagatt |
21819123 |
T |
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| Q |
208 |
gtgaagaacaagtatccaacttgggatccatgtttcattaacatggatgttgaacaactcaaagccttcactgctattgtaaatgccaagattgaagctt |
307 |
Q |
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| T |
21819122 |
gtgaagaacaagtatccaacttgggatccatgtttcattaacatggatggtgaacaactcaaagccttcactgctattgtaaatgccaagattgaagctt |
21819023 |
T |
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| Q |
308 |
gtgatcaaagaattagcatgctggaaactatgcaccaagatgatcaaactagtgccttgcatgacactcctcaaagactgcataccctt |
396 |
Q |
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| T |
21819022 |
gtgatcaaagaattagcatgctgaaaactatgcaccaaggtgatcaaactagtgccttgcatgacactcctcaaaggcagcataccctt |
21818934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 270
Target Start/End: Original strand, 21875986 - 21876248
Alignment:
| Q |
8 |
gcttgattgtgtatgatggttctggtgaaggtagaccaataactacgccacaagattcgacaattgttcggtccatgcttgaaaactatgagcaacaaaa |
107 |
Q |
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|||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
21875986 |
gcttgattgtatatgatggttacggtgatggtagaccgataactacgccacaagattcgacaattgtacggtccatgcttgaaaaatatgagcaacaaaa |
21876085 |
T |
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| Q |
108 |
gattgagggtataactacaaagatctttgatgtgaaggactattttgcaaataagaagaataagattgaaggtgagatttccaaaatgcagaaagagatt |
207 |
Q |
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||||||||||| | ||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| | || |||||||| |
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| T |
21876086 |
gattgagggtacacctacagagatctttgatgtgaaagactattttgaaaataagaagaataagattgaaagtgagatttccaaagtacacaaagagatc |
21876185 |
T |
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| Q |
208 |
gtgaagaacaagtatccaacttgggatccatgtttcattaacatggatgttgaacaactcaaa |
270 |
Q |
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| T |
21876186 |
ttgatgaaaatgtatccaacttggcacccatgcttcatgaacatgaatggggaacaactcaaa |
21876248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 127 - 329
Target Start/End: Original strand, 21868232 - 21868434
Alignment:
| Q |
127 |
aagatctttgatgtgaaggactattttgcaaataagaagaataagattgaaggtgagatttccaaaatgcagaaagagattgtgaagaacaagtatccaa |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| | |||||||| |
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| T |
21868232 |
aagatctttgatgtgaaggactattttgcaaataagaagaataaggttgaaggtgagatttccaaagtgcacaaagagattgtgatgaaaatgtatccaa |
21868331 |
T |
|
| Q |
227 |
cttgggatccatgtttcattaacatggatgttgaacaactcaaagccttcactgctattgtaaatgccaagattgaagcttgtgatcaaagaattagcat |
326 |
Q |
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| T |
21868332 |
cttggcacccatgcttcatgaacatggatggggaacaactcaaaactttcattggtattctagatgccaagattcaagcttgtaatcacaaaattagcat |
21868431 |
T |
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| Q |
327 |
gct |
329 |
Q |
| |
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||| |
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| T |
21868432 |
gct |
21868434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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