View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714-Insertion-10 (Length: 308)
Name: NF5714-Insertion-10
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 161 - 308
Target Start/End: Original strand, 12690818 - 12690965
Alignment:
| Q |
161 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
260 |
Q |
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| T |
12690818 |
taaatcttaactttcatatatataatcattaccaatgaactcaaacatgtaactcctcgacgaaggtgaggtcgttatcgcaactttattttctctcggt |
12690917 |
T |
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| Q |
261 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcg |
308 |
Q |
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| T |
12690918 |
gtataagagtattatacaaggattttccacccgaggcaactcacctcg |
12690965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 12690724 - 12690833
Alignment:
| Q |
8 |
ataactggtgtgattgaaagagtcatatgtggtctaagagaggatattatagttggaatcattgttgctaaagagatttctaatacataatcattaaatc |
107 |
Q |
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| T |
12690724 |
ataactggtgtgattgaaagagtcatatgtggtctaagagaggatattatagttggaatcattgttgctaaagagatttctaatatataatcattaaatc |
12690823 |
T |
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| Q |
108 |
ttaactttca |
117 |
Q |
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| T |
12690824 |
ttaactttca |
12690833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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