View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5714-Insertion-11 (Length: 276)

Name: NF5714-Insertion-11
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5714-Insertion-11
NF5714-Insertion-11
[»] chr4 (2 HSPs)
chr4 (6-276)||(23155124-23155399)
chr4 (32-134)||(23142855-23142953)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 23155124 - 23155399
Alignment:
Q  6 catattggattatttttaaacaatacacattattatttaatatttccggtaaaacatgcttgcgtttcatgtct----tatttaaagttttaaagagatt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  23155124 catattggattatttttaaacaatacacattattatttaatatttccggtaaaacatgcttgcgtttcatgtcttatatatttaaagttttaaagagatt 23155223  T
Q  102 tacgtatcaaccattgaattttgcgattaacatccaccaa-nnnnnnnnnnnnnnnnnggaaattggacgtcgttacttgaatgtgcttttgtctcaagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||    
T  23155224 tacgtatcaaccattgaattttgcgattaacatccaccaattttttatttttttttttggaaattggacgtcgttacttgaatgtgcttttgtctcaagt 23155323  T
Q  201 catattctgcatagcatcattctaacaatattatgacatttttcgtcgttttggcaatattctgttacacctttac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23155324 catattctgcatagcatcattctaacaatattatgacatttttcgtcgttttggcaatattctgttacacctttac 23155399  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 23142855 - 23142953
Alignment:
Q  32 acattattatttaatatttccggtaaaacatgcttgcgtttcatgtcttatttaaagttttaaagagatttacgtatcaaccattgaattttgcgattaa 131  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    ||||||||| |||| |||||| |||| | ||||    
T  23142855 acatgattatttaatatttccagtaaaacatgcttgcgttttatgtcttatttaaagtcttaa----atttacgtaacaactattgaaatttgtgtttaa 23142950  T

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