View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5714-Insertion-3 (Length: 946)
Name: NF5714-Insertion-3
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-3 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 840; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 7 - 946
Target Start/End: Original strand, 25597971 - 25598903
Alignment:
| Q |
7 |
agtatgatctccaatttttgcctctaagctagaggtgcttttccnnnnnnnnnnnnnctaaccttacattccatacagtatgtatcacttctactcaaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
25597971 |
agtatgatctccaatttttgcctctaagctagaggtgcttttccttttttt------ctaaccttacattccatataatatgtatcacttctactcgaac |
25598064 |
T |
|
| Q |
107 |
gaaagtcatatgtttcttgccgtgtgtttggtagcatgatagcattcctccgccgcatgtttaaatgtcatttcatcttaacttttacgaagctttagat |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598065 |
gaaagtcatatgtttcttgccgtgtgcttggtagcatgatagcattcctccgctgcatgtttaaatgtcatttcatcttaacttttacgaagctttagat |
25598164 |
T |
|
| Q |
207 |
tcgagcatcaaatgagcagaactactatgattttgcatactaccgaacacatgctaaagctaatctcgaactaacctccaatttatttcctctcgaatca |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598165 |
ttgagcatcaaatgagcagaactactatgattttgcatactaccgaacacatgctaaagctaatctcgaactaacctccaatttatttcctctcgaatca |
25598264 |
T |
|
| Q |
307 |
ttttcaaaaagcatgcatcacagtgttggctcttgaggtgctccacaagtacattcaacactaatctaaaaaatatacgtaaaaccgatgcttggtgcag |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25598265 |
ttttcaaaaagcatgcatcacagtgttggctcttgaggtgctccacaagtacattcaacactaatctaaaaaatatacgtaaaactgatgcttggtgcag |
25598364 |
T |
|
| Q |
407 |
tcctacaagattaaacattcatataaaatttgtttacattacagtgtatgtagttacaattttaaacggagtttggttggggtaataagattatcttaca |
506 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598365 |
tcctacaagattagacatttatataaaatttgtttacattacagtgtatgtagttataattttaaacggagtttggttggggtaataagattatcttaca |
25598464 |
T |
|
| Q |
507 |
ggaaagaagcactgcactacaagaatacgagcaagaggagagcattgggacagtgaatactgcatcaatcacgaacaacaccgttttgttcagcaattca |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598465 |
ggaaagaagcactgcactacaagaatacgagcaagagaagagcattgggacagtgaatactgcatcaatcacgaacaacaccgttttgttcagcaattca |
25598564 |
T |
|
| Q |
607 |
ccagtgcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagttttcactttccaggacacaacagag |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25598565 |
ccagtgcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagctttcactttccaggacacaacagag |
25598664 |
T |
|
| Q |
707 |
gccatgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctcttttgtcccca |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598665 |
gccatgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctcttttgtcccca |
25598764 |
T |
|
| Q |
807 |
agggcccatattagaagcacaaagagaagcatccaaactgttcggatcatcagaagacatggtttcttgtcaacggtactacttgtggagtccaggcagc |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598765 |
agggcccatattagaagcacaaagagaagcatccaaactgttcggatcatcag-agacatggtttcttgtcaacggtactacttgtggagtccaggcagc |
25598863 |
T |
|
| Q |
907 |
aataatggcaacctgttcaccgggagaatatctgattctt |
946 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25598864 |
aataatggcaacctgttcaccgggagaatatctgattctt |
25598903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 502 - 946
Target Start/End: Original strand, 25588808 - 25589251
Alignment:
| Q |
502 |
ttacaggaaagaagcactgcactacaagaatacgagcaagaggagagcattgggacagtgaatactgcatcaatcacgaacaacaccgttttgttcagca |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25588808 |
ttacaggaaagaagcactgcactacaagaatacgagcaagaggagagcattgggacagtgaatactgcatcaatcacgaacaacaccgttttgttcagca |
25588907 |
T |
|
| Q |
602 |
attcaccagtgcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagttttcactttccaggacacaa |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25588908 |
attcaccagtgcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagctttcactttccaggacacaa |
25589007 |
T |
|
| Q |
702 |
cagaggccatgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctcttttgt |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589008 |
cagaggccatgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctcttttgt |
25589107 |
T |
|
| Q |
802 |
ccccaagggcccatattagaagcacaaagagaagcatccaaactgttcggatcatcagaagacatggtttcttgtcaacggtactacttgtggagtccag |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589108 |
ccccaagggcccatattagaagcacaaagagaagcatccaaactgttcggatcatcag-agacatggtttcttgtcaacggtactacttgtggagtccag |
25589206 |
T |
|
| Q |
902 |
gcagcaataatggcaacctgttcaccgggagaatatctgattctt |
946 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25589207 |
gcagcaataatggcaacctgttcaccgggagaatatctgattctt |
25589251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 496 - 946
Target Start/End: Original strand, 25583961 - 25584410
Alignment:
| Q |
496 |
attatcttacaggaaagaagcactgcactacaagaatacgagcaagaggagagcattgggacagtgaatactgcatcaatcacgaacaacaccgttttgt |
595 |
Q |
| |
|
||||| |||||||||||||||| |||||| | |||||| | | || | |||||| |||||||||||| || | ||||||||| ||||| || | | |
|
|
| T |
25583961 |
attattttacaggaaagaagcattgcactgccagaatatgggaaatacgagagcgttgggacagtgagcacagaatcaatcacaaacaatcccaatgaat |
25584060 |
T |
|
| Q |
596 |
tcagcaattcaccagtgcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagttttcactttccagg |
695 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |
|
|
| T |
25584061 |
gcagcaattcaccagagattcggcagagtggcctacctcctttagtcagtgcattgaaagcctcagctgaagaaaatgctgctacttttcactttcctgg |
25584160 |
T |
|
| Q |
696 |
acacaacagaggccatgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgattt-gtctagcattccagagcttgacaacct |
794 |
Q |
| |
|
||| |||||||||||||| |||||| | ||| |||||| |||||||||| ||||||||||| ||||||||| | ||| |||| || ||||||||||| |
|
|
| T |
25584161 |
acataacagaggccatgctgctcctgcctcgatgactcgactcattggaagaagaccatatgttcatgatttacccgagc-ttcctgaacttgacaacct |
25584259 |
T |
|
| Q |
795 |
cttttgtccccaagggcccatattagaagcacaaagagaagcatccaaactgttcggatcatcagaagacatggtttcttgtcaacggtactacttgtgg |
894 |
Q |
| |
|
||| ||||||||||| || |||||||||||||||| ||||||||||||||| || || ||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
25584260 |
cttctgtccccaaggacctatattagaagcacaaacagaagcatccaaactttttggttcatcag-agacatggtttcttgtcggaggtactacttgtgg |
25584358 |
T |
|
| Q |
895 |
agtccaggcagcaataatggcaacctgttcaccgggagaatatctgattctt |
946 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
25584359 |
gattcaggcagcaataatggcaacctgttcaccaggagaatttcttattctt |
25584410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 612 - 812
Target Start/End: Original strand, 48465798 - 48465997
Alignment:
| Q |
612 |
gcttcagcagagtggcctacctcctctagtcagtgcattgaaagcctcagctgaagaaaatgctgccagttttcactttccaggacacaacagaggccat |
711 |
Q |
| |
|
|||||| ||||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
48465798 |
gcttcaacagagtgcccaacctcttctagtctctgcattgaaagcctcagctgaagaaaatgctgccagttttcactttcctggacacgacagaggccat |
48465897 |
T |
|
| Q |
712 |
gccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctcttttgtccccaagggc |
811 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
48465898 |
gccgctccttcttcattgatccaactcattgga-taagacaatatgctcatgatttgtccagcattccggaacttgacaacctcttttgtccccaagggc |
48465996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 612 - 799
Target Start/End: Original strand, 42076584 - 42076773
Alignment:
| Q |
612 |
gcttcagcagagtggcctacctcctctagtca--gtgcattgaaagcctcagctgaagaaaatgctgccagttttcactttccaggacacaacagaggcc |
709 |
Q |
| |
|
|||||||||||||| || ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42076584 |
gcttcagcagagtgcccaacctcctttagtctctgtgcattgaaagcctcacttgaagaaaatgctgccagttttcactttcgtggacacaacagaggcc |
42076683 |
T |
|
| Q |
710 |
atgccgctccttcttcgttgactcaactcattggagtaagaccatatgctcatgatttgtctagcattccagagcttgacaacctctttt |
799 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||| | ||||| || |||| ||||||||||| |
|
|
| T |
42076684 |
atgccgctccttcttcattgacccaactcattggaataagactatatgctcatgatttgtacaacattctggaacttgtcaacctctttt |
42076773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University