View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5714-Insertion-4 (Length: 925)
Name: NF5714-Insertion-4
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-4 |
 | |
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| [»] scaffold0543 (1 HSPs) |
| | |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 802; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 802; E-Value: 0
Query Start/End: Original strand, 7 - 878
Target Start/End: Original strand, 49868414 - 49869277
Alignment:
| Q |
7 |
aagagtaaactaattaacttgttgaatttaagagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagc |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49868414 |
aagagtgaactaattaacttgttgaatttaagagactaatgcagagattgttggcgttatgaagccaatcatactcaataaaattatcagaaacgttagc |
49868513 |
T |
|
| Q |
107 |
tcttaccaaaattggataggcttaaaagcaccttaagacctccataattatttttctttaaacttaaatcctttgtttccaactcctctagaatgggaga |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
49868514 |
tcttaccaaaattggataggcttaaaagcaccttaagacctccataattatttttctttaaacttaaatcctttgtttccaactcctctagaatgg-aga |
49868612 |
T |
|
| Q |
207 |
accgtagaaaagcttcaagtaatgttgataatatatgaaagtaacagattccaagtggagaagtttgagcaagggaagatgaacttgtggaactttgtca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49868613 |
accgtagaaaagcttcaagtaatgttgataatatatgaaagtaacagattccaagtggagaagtttgagcaagggaagatgaacttgtggaactttgtca |
49868712 |
T |
|
| Q |
307 |
aggttttggtagtaagaacgaaagtaggcaatgtggttttggagtaaaggcagagatcgatggttaggtttttaactcctccttgaactacattataaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
49868713 |
aggttttggtagtaagaacgaaagtaggcaatgtagttttggagtaaaggcagagatcgatggttaggtttttaactcctccttgaacttcattataaac |
49868812 |
T |
|
| Q |
407 |
aaaatcattgatatcgttttgggagtgacgacggctgccaagttttagctggaattataccgtagaacaatacatactctaaagttggagaaaggattgt |
506 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49868813 |
aaaatcattgatatcgttttgggaggga-------tgccaagttttagctggaattataccgtagaacaatacatactctaaagttggagaaaggattgt |
49868905 |
T |
|
| Q |
507 |
ttttccttgaaaggccatgctcaattcttctggtatgtcaatttgacttgttccgctttcatcagcttccaaatttcaaaatgcaatcagcaaaaatttt |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49868906 |
ttttccttgaaaggccatgctcaattcttctggtatgtcaatttgacttgttccgctttcatcagcttccaaatttcaaaatgcaatcagcaaaaatttt |
49869005 |
T |
|
| Q |
607 |
aatttcaactcaagagtgtgttgtaccacgacctttcaaccacatatttttagtaagcatcaaaagttaaaaactctttaaaaccaatgcataattaatc |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
49869006 |
aatttcaactcaagagtgtgttgtaccacgacctttcaaccacatatttttagtaagcatcaaaagttaaaaactcttcaaaaccaatgcataattaatg |
49869105 |
T |
|
| Q |
707 |
actgctttaatgatatttgtgcttcatccttttctaataacatatccaaaatctcctcccaatacaacaacttttccaccaaattgtttctttatctact |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49869106 |
actgctttaatgatatttgtgcttcatccttttctaataacatatccaaaatctcctcccaatacaacaacttttccaccaaattgtttctttatctact |
49869205 |
T |
|
| Q |
807 |
tttctcatcaaataactcatggtgctatcaaaagttttgaagcagtcctttgagcttaggtcctgcaatcaa |
878 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
49869206 |
tttctcatcaaataactcatggtgcgatcaaaagtttggaagcagtcctttgagcttaggtcctgcgatcaa |
49869277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 303 - 387
Target Start/End: Complemental strand, 39559066 - 39558982
Alignment:
| Q |
303 |
gtcaaggttttggtagtaagaacgaaagtaggcaatgtggttttggagtaaaggcagagatcgatggttaggtttttaactcctc |
387 |
Q |
| |
|
|||||||||||| |||| ||||| |||| |||||||||||||||||| | | |||||||||||||| ||||||||| |||||||| |
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|
| T |
39559066 |
gtcaaggttttgttagttagaactaaagaaggcaatgtggttttggatttatggcagagatcgatgcttaggttttcaactcctc |
39558982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 755 - 789
Target Start/End: Original strand, 19721965 - 19721999
Alignment:
| Q |
755 |
aaatctcctcccaatacaacaacttttccaccaaa |
789 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
19721965 |
aaatctccacccaatacaacaacttttccaccaaa |
19721999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 755 - 789
Target Start/End: Complemental strand, 22422615 - 22422581
Alignment:
| Q |
755 |
aaatctcctcccaatacaacaacttttccaccaaa |
789 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
22422615 |
aaatctccacccaatacaacaacttttccaccaaa |
22422581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 39558969 - 39558935
Alignment:
| Q |
170 |
ttaaatcctttgtttccaactcctctagaatggga |
204 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
39558969 |
ttaaatcctttgcttccaactcctctagaatggga |
39558935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 755 - 789
Target Start/End: Complemental strand, 11836292 - 11836258
Alignment:
| Q |
755 |
aaatctcctcccaatacaacaacttttccaccaaa |
789 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
11836292 |
aaatctccacccaatacaacaacttttccaccaaa |
11836258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 2563 - 2596
Alignment:
| Q |
12 |
taaactaattaacttgttgaatttaagagactaa |
45 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
2563 |
taaactaattaactttttgaatttaagagactaa |
2596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 4109 - 4142
Alignment:
| Q |
12 |
taaactaattaacttgttgaatttaagagactaa |
45 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
4109 |
taaactaattaactttttgaatttaagagactaa |
4142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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