View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5714-Insertion-5 (Length: 910)
Name: NF5714-Insertion-5
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-5 |
 | |
|
| [»] scaffold0458 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 806; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 806; E-Value: 0
Query Start/End: Original strand, 8 - 909
Target Start/End: Original strand, 24062219 - 24063117
Alignment:
| Q |
8 |
tgttggttagtcaaaacggcactgaggaaagtctcaaaatcttcggcttgagaagttggaagaacgttactagattgatttgttgtgccataagtgtttg |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24062219 |
tgttggttagtcaaaacggcgctgaggaaagtctcaaaatcttcggcttgagaagttggaagaacattactagattgatttgttgtgccataagtgtttg |
24062318 |
T |
|
| Q |
108 |
ataagtattcaaaacttaggttagcaaggtatttacaatcttcaagagcgcgaattgtggattgagacaaagacgaactactttgaagatatgagtccaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
24062319 |
ataagtattcaaaacttaggttagcaaggtattgacaatcttcaagagcgcgaattgtggattgagacaaagacgaactcccttgaagatatgagtccaa |
24062418 |
T |
|
| Q |
208 |
taagttcacgaacttacgagattggaataaggactttcgaatagaaatgcgaccatagtcgtatatgtttccattttcactaccaagaacggttttacaa |
307 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062419 |
taagttcacaaacttacgagattgggataaggactttcgaatagaaatgcgaccatagtcatatatgtttccattttcactaccaagaacggttttacaa |
24062518 |
T |
|
| Q |
308 |
taaatagggtttatggtacccttgcaaatggtttcagatggaacattatttgctacacacaatgatacaaagaacaagattgaaagtagaaaggaaacat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062519 |
taaatagggtttatggtacccttgcaaatggtttcaggtggaacattatttgctacacacaatgatacaaagaacaagattgaaagtagaaaggaaacat |
24062618 |
T |
|
| Q |
408 |
acaagttcataaaggtgaagtttttgaaagccattggtatttgaatgaatggatgaaagggttgttatagctagatggatgaatataagatgcatggctt |
507 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062619 |
acaatttcataaaggtgaagtttttgaaagccattggtatttgaatgaatggatgaaagggttgttatagctagatggatgaatataagatgcatggctt |
24062718 |
T |
|
| Q |
508 |
ctagggtttatatagtagctatgaagattttttgtcatattaatataatatcattagtgagaatgaagaaaagtcaactatattcttagtagctagctac |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062719 |
ctagggtttatatagtagctatgaagattttttgttgcattaatataatatcattagtgagaatgaagaaaagtcaactatattcttagtagctagctac |
24062818 |
T |
|
| Q |
608 |
aaggaatttgtcttaatttgtatctttgatgttgatattttggctaccgtgaatgcattcaccaataccaacctactattgtgaatatttaaatttattt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
24062819 |
aaggaatttgtcttaatttgtatctttgatgttgatattttggctaccgtgaatgcattcaccaataccaacctactattgtgaatatttaatttcatta |
24062918 |
T |
|
| Q |
708 |
gagatttaggatgaaccttaaacattcatcaagttcaatgtaatggtgtatgtatacaaatattccttgggattttgtttacttgtttacattttgtaca |
807 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24062919 |
gagatttaggatgaa-cttaaacattcatcaagttcaatgtaatggtgtatgtatacaaatattccttgggattttgtttacttgtttacattttgtaca |
24063017 |
T |
|
| Q |
808 |
aggttagttcggtacacgacttatggtcttatatccttagaatataaaattatagcttagttgtcaactggtgaggttggkttcccagcaatcacaagac |
907 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
24063018 |
aggttagttcggtacacgacttatgatcttatatccatagaatataaaattatagcttagttgtcaact-gtgaggttgg-ttcccagcaatcacaagac |
24063115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 39450040 - 39449651
Alignment:
| Q |
8 |
tgttggttagtcaaaacggcactgaggaaagtctcaaaatcttcggcttgagaagttggaagaacgttactagattgatttgttgtgccataagtgtttg |
107 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
39450040 |
tgttgattagtcaaaacggcactaagaaaagtttcaaagtcttctgcttgagaagttggaagaacattactagattgatttgttgttgtataggtgtttg |
39449941 |
T |
|
| Q |
108 |
ataagtattcaaaacttaggttagcaaggtatttacaatcttcaagagcgcgaattgtggattgagacaaagacgaactactttgaagatatgagtccaa |
207 |
Q |
| |
|
|||||||||||||||| | | ||||||| || ||||||||||||||| |||||||||||||||||||||||||||| || |||||| | |||||| | |
|
|
| T |
39449940 |
ataagtattcaaaactcaattcagcaaggaatcgacaatcttcaagagcacgaattgtggattgagacaaagacgaaccaccttgaaggtgtgagtctat |
39449841 |
T |
|
| Q |
208 |
taagttcacgaacttacgagattggaataaggactttcgaatagaaatgcgaccatagtcgtatatgtttccattttcactaccaagaacggttttacaa |
307 |
Q |
| |
|
| |||||| ||||||||| ||||| ||||||| |||||||| ||||| ||||| ||||| || ||||||||||||| | | |||| | | |||||||| |
|
|
| T |
39449840 |
tgagttcatgaacttacgggattgcgataaggattttcgaattgaaattcgaccgtagtcataaatgtttccattttgattggcaagtatgtttttacaa |
39449741 |
T |
|
| Q |
308 |
taaatagggtttatggtacccttgcaaatggtttcagatggaacattatttgctacacacaatgatacaaagaacaagattgaaagtaga |
397 |
Q |
| |
|
||| ||||||||| ||| | ||||||||||| | |||| | |||||||||| ||| |||||||||| |||||| ||||||||| |
|
|
| T |
39449740 |
taagtagggtttacggtggacccacaaatggtttctggaggaataccatttgctacatgcaaggatacaaagatcaagatcgaaagtaga |
39449651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 39470912 - 39470523
Alignment:
| Q |
8 |
tgttggttagtcaaaacggcactgaggaaagtctcaaaatcttcggcttgagaagttggaagaacgttactagattgatttgttgtgccataagtgtttg |
107 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
39470912 |
tgttgattagtcaaaacggcactaagaaaagtttcaaagtcttctgcttgagaagttggaagaacattactagattgatttgttgttgtataggtgtttg |
39470813 |
T |
|
| Q |
108 |
ataagtattcaaaacttaggttagcaaggtatttacaatcttcaagagcgcgaattgtggattgagacaaagacgaactactttgaagatatgagtccaa |
207 |
Q |
| |
|
|||||||||||||||| | | ||||||| || ||||||||||||||| |||||||||||||||||||||||||||| || |||||| | |||||| | |
|
|
| T |
39470812 |
ataagtattcaaaactcaattcagcaaggaatcgacaatcttcaagagcacgaattgtggattgagacaaagacgaaccaccttgaaggtgtgagtctat |
39470713 |
T |
|
| Q |
208 |
taagttcacgaacttacgagattggaataaggactttcgaatagaaatgcgaccatagtcgtatatgtttccattttcactaccaagaacggttttacaa |
307 |
Q |
| |
|
| | |||| ||||||||| ||||| ||||||| |||||||| ||||| ||||| ||||| || ||||||||||||| | | |||| | | |||||||| |
|
|
| T |
39470712 |
tgaattcatgaacttacgggattgcgataaggattttcgaattgaaattcgaccgtagtcataaatgtttccattttgattggcaagtatgtttttacaa |
39470613 |
T |
|
| Q |
308 |
taaatagggtttatggtacccttgcaaatggtttcagatggaacattatttgctacacacaatgatacaaagaacaagattgaaagtaga |
397 |
Q |
| |
|
||| ||||||||| |||| | ||||||||||| | |||| | |||||||||| ||| |||||||||| |||||| ||||||||| |
|
|
| T |
39470612 |
taagtagggtttacggtagacccacaaatggtttctggaggaataccatttgctacatgcaaggatacaaagagcaagatcgaaagtaga |
39470523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 142; Significance: 4e-74; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 3581 - 3970
Alignment:
| Q |
8 |
tgttggttagtcaaaacggcactgaggaaagtctcaaaatcttcggcttgagaagttggaagaacgttactagattgatttgttgtgccataagtgtttg |
107 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
3581 |
tgttgattagtcaaaacggcactaagaaaagtttcaaagtcttctgcttgagaagttggaagaacattactagattgatttgttgttgtataggtgtttg |
3680 |
T |
|
| Q |
108 |
ataagtattcaaaacttaggttagcaaggtatttacaatcttcaagagcgcgaattgtggattgagacaaagacgaactactttgaagatatgagtccaa |
207 |
Q |
| |
|
|||||||||||||||| | | ||||||| || ||||||||||||||| |||||||||||||||||||||||||||| || |||||| | |||||| | |
|
|
| T |
3681 |
ataagtattcaaaactcaattcagcaaggaatcgacaatcttcaagagcacgaattgtggattgagacaaagacgaaccaccttgaaggtgtgagtctat |
3780 |
T |
|
| Q |
208 |
taagttcacgaacttacgagattggaataaggactttcgaatagaaatgcgaccatagtcgtatatgtttccattttcactaccaagaacggttttacaa |
307 |
Q |
| |
|
| | |||| ||||||||| ||||| ||||||| |||||||| ||||| ||||| ||||| || ||||||||||||| | | |||| | | |||||||| |
|
|
| T |
3781 |
tgaattcatgaacttacgggattgcgataaggattttcgaattgaaattcgaccgtagtcataaatgtttccattttgattggcaagtatgtttttacaa |
3880 |
T |
|
| Q |
308 |
taaatagggtttatggtacccttgcaaatggtttcagatggaacattatttgctacacacaatgatacaaagaacaagattgaaagtaga |
397 |
Q |
| |
|
||| ||||||||| |||| | ||||||||||| | |||| | |||||||||| ||| |||||||||| |||||| ||||||||| |
|
|
| T |
3881 |
taagtagggtttacggtagacccacaaatggtttctggaggaataccatttgctacatgcaaggatacaaagagcaagatcgaaagtaga |
3970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University