View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714-Insertion-6 (Length: 863)
Name: NF5714-Insertion-6
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-6 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 407 - 856
Target Start/End: Original strand, 14753660 - 14754099
Alignment:
| Q |
407 |
ttgcatatataaaagatttctttcttctcatgtggggttggttcatgagtttaaacggaactaataatcctacgtttaaatggacctacaatacgtaaat |
506 |
Q |
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| T |
14753660 |
ttgcatatataaaagatttctttcttctcatgtgg--ttggttcatgaatttaaacggaactaataatcctacgtttaaatggacctacaatacgtcaat |
14753757 |
T |
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| Q |
507 |
actatatatccatgctctatattttttggataaatatccaactcaaaatttgactcattaaattatacatatttcgatttcgtgagctcaattaacacgt |
606 |
Q |
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| T |
14753758 |
actatatatcca-gctctatattttttggataaatatccaactcaaaatttgactcattaaattatacatatttcgatttcgtgagctcaattaacacgt |
14753856 |
T |
|
| Q |
607 |
ctctaagatttagatgcaatgatgtgagaggtttgataataaataatttcaataaataaaggtgcttgtttacatcttctataaatcaaaatcaaaacag |
706 |
Q |
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| T |
14753857 |
ctctaagatttagatgcaatgatgtgagaggcttgataataaataatttcaataaataaaggtgcttgtttacattttctgt------aaatcaaaacaa |
14753950 |
T |
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| Q |
707 |
ataaaaagaaaagctagtcctcgtcttttgtatnnnnnnnntctgttgaagtttccataaatttatgctctcaaagcaacattattttggtattgatccg |
806 |
Q |
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| T |
14753951 |
ataaaaagaaaagctagtcctcgtcttttgtataaaaaaaatctgttgaagtttccataaatttatgctctcaaagcaacgttatcttcttgttggtccg |
14754050 |
T |
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| Q |
807 |
agtgaaattagactccaaattttttaaataaaatccatgcttcttggatt |
856 |
Q |
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| T |
14754051 |
agtgaaattagact-caaattttttaaataaaatccatgcttcttggatt |
14754099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 336 - 407
Target Start/End: Original strand, 14749027 - 14749099
Alignment:
| Q |
336 |
aaaaaacacattctaatattctaattcaacatcatcaaaccaattgaagtgggttgcatgact-ttagataat |
407 |
Q |
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| T |
14749027 |
aaaaaacacattctaatattctaatccaacatcatcaaaccaattcaagtgggttgcattactcttagataat |
14749099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 30331281 - 30331157
Alignment:
| Q |
17 |
ctcaaaagatcaatcaaatttcttcttatgcctaaaaatccacaaactttaaataatgttagcatgagaccgaaggagcactaagtctcatgccttattt |
116 |
Q |
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| T |
30331281 |
ctcaaaagaaccatcagctttcttcttatgcctaaaaatccataaacttcgaataatattagcattagaaggacgtggcactaaatcccacgtcttatta |
30331182 |
T |
|
| Q |
117 |
gcaataagagcatcgtatttgtctt |
141 |
Q |
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| T |
30331181 |
tcaataagagcatcatattcgtctt |
30331157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 50690288 - 50690235
Alignment:
| Q |
12 |
taacgctcaaaagatcaatcaaatttcttcttatgcctaaaaatccacaaactt |
65 |
Q |
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| T |
50690288 |
taacgctcaaatgaaccatcagatttcttcttgtgcctgaaaatccacaaactt |
50690235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 32308379 - 32308528
Alignment:
| Q |
17 |
ctcaaaagatcaatcaaatttcttcttatgcctaaaaatccacaaactttaaataatgttagcatgagaccgaaggagcactaagtctcatgccttattt |
116 |
Q |
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| T |
32308379 |
ctcaaaagaaccatcagctttcttcttatgcctgaaaatccataaacttcgaataatattagcattagaaggacgtggcactaaatcccacgtcttatta |
32308478 |
T |
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| Q |
117 |
gcaataagagcatcgtatttgtcttgaaggatcattttccaactatgatc |
166 |
Q |
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| T |
32308479 |
tcaataagagcatcatattcgtctttcatggccattttccaattatgatc |
32308528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 33363609 - 33363758
Alignment:
| Q |
17 |
ctcaaaagatcaatcaaatttcttcttatgcctaaaaatccacaaactttaaataatgttagcatgagaccgaaggagcactaagtctcatgccttattt |
116 |
Q |
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| T |
33363609 |
ctcaaaagaaccatcagctttcttcttatgcctgaaaatccataaacttcgaataatattagcattagaaggacgtggcactaaatcccacgtcttatta |
33363708 |
T |
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| Q |
117 |
gcaataagagcatcgtatttgtcttgaaggatcattttccaactatgatc |
166 |
Q |
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| T |
33363709 |
tcaataagagcatcatattcgtctttcatggccattttccaattatgatc |
33363758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 30822 - 30770
Alignment:
| Q |
8 |
tttataacgctcaaaagatcaatcaaatttcttcttatgcctaaaaatccaca |
60 |
Q |
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| T |
30822 |
tttataacgctcaaaagagccatcagaatttttcttatgcctaaaaatccaca |
30770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 10534611 - 10534661
Alignment:
| Q |
15 |
cgctcaaaagatcaatcaaatttcttcttatgcctaaaaatccacaaactt |
65 |
Q |
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| T |
10534611 |
cgctcaaaagaaccatcagatttcttcttgtgcctgaaaatccacaaactt |
10534661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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