View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5714-Insertion-8 (Length: 491)
Name: NF5714-Insertion-8
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714-Insertion-8 |
 | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0343 (2 HSPs) |
| | |
|
| [»] scaffold1951 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 65 - 487
Target Start/End: Original strand, 44521474 - 44521896
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
44521474 |
aacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg |
44521573 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44521574 |
ccataaatacagacatcatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaactga |
44521673 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
44521674 |
aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaatgcg |
44521773 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44521774 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatggggtaaacccgccatatgtccaaactga |
44521873 |
T |
|
| Q |
465 |
agataatggtctctacatccgac |
487 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44521874 |
agataatggtctctacatccgac |
44521896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 65 - 487
Target Start/End: Original strand, 7282532 - 7282954
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||| ||||||| |
|
|
| T |
7282532 |
aacaagtcaaaatagatttcataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaacgatacaaaattcagttcactggtg |
7282631 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
7282632 |
ccataaatacagacatcaagctttcacaatcaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaaccga |
7282731 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7282732 |
aggcaaaagaatgcaacctagctttaagccactagaatgagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaatgtg |
7282831 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| |
|
|
| T |
7282832 |
attgttcctctccttccaagtggtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacctgccatatgtccaaactga |
7282931 |
T |
|
| Q |
465 |
agataatggtctctacatccgac |
487 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
7282932 |
aggcaatggtctctacatccgac |
7282954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 230 - 484
Target Start/End: Complemental strand, 44233729 - 44233475
Alignment:
| Q |
230 |
agacatagggtgttgccaccaatcatggtaactgaaggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaa |
329 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||||| | |||||||| |||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
44233729 |
agacatagggtattgccaccagtcatggtaactgaaagcaaacatatgcaacctaactttaagccactagaaagaaagtaatttcactctgtcagatata |
44233630 |
T |
|
| Q |
330 |
atgctaatcgatgtagccttctgagtaaaaatgtgattgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtg |
429 |
Q |
| |
|
| | | | || |||||||||||| |||||||||| ||||||||||||||||| | ||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44233629 |
acgtttactgaagtagccttctgattaaaaatgtggttgttcctctccttccaaattgtccacacacaagccagccaaattaattgtaaaaaagaatgtg |
44233530 |
T |
|
| Q |
430 |
aagaatggggtaaacccgccatatgtccaaactgaagataatggtctctacatcc |
484 |
Q |
| |
|
|| |||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44233529 |
aaaaatgcggtaaacctgccatatgtccaaactggagataatggtctctacatcc |
44233475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 291 - 475
Target Start/End: Complemental strand, 31430197 - 31430013
Alignment:
| Q |
291 |
agccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtgattgttcctctccttccatgtagtcc |
390 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| | || |||| || | | |||||||| ||| ||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
31430197 |
agccactagaatgaaagtagtttcaccctgtctgctataatgttagttgtcgtagccttgtgattaaaaatgtgattgttcatctccgtccaaatagtcc |
31430098 |
T |
|
| Q |
391 |
atacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactgaagataatggtc |
475 |
Q |
| |
|
| |||||||| ||||| |||| ||||| || |||||||| | || ||||| | |||| ||| |||||||||| ||||||||| |
|
|
| T |
31430097 |
aaacacaagctagccagattatctgtatgaataaatgtgaaaattgtggtaacctggccaaatgcccaaactgaatataatggtc |
31430013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 10427874 - 10427830
Alignment:
| Q |
88 |
accagaagtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
10427874 |
accaaaagtgattcatctcgcacaaggtgtgcaaaagagaatcac |
10427830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 41530740 - 41530700
Alignment:
| Q |
100 |
tcatctcgcacaagatgtgcaaaagagaatcacttaaaaat |
140 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
41530740 |
tcatctcgcacaagatgtgcaaaagagaaacatttaaaaat |
41530700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 44233839 - 44233748
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtt |
156 |
Q |
| |
|
|||||||||||||| || |||||||||||||| || |||| || ||| ||||||||||| |||||||| ||| ||||||| ||||||| |
|
|
| T |
44233839 |
aacaagccaaaatgggattaataaccagaagtgattcgtctcacataaggtgtgcaaaagataatcacttcaaacaaatacaaatgtcagtt |
44233748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 131
Target Start/End: Complemental strand, 45023774 - 45023743
Alignment:
| Q |
100 |
tcatctcgcacaagatgtgcaaaagagaatca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
45023774 |
tcatctcgcacaagatgtgcaaaagagaatca |
45023743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 28287483 - 28287445
Alignment:
| Q |
218 |
aatacccatacaagacatagggtgttgccaccaatcatg |
256 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28287483 |
aatacccatacaagacagagggtgttgccaccattcatg |
28287445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 13141166 - 13141133
Alignment:
| Q |
95 |
gtgagtcatctcgcacaagatgtgcaaaagagaa |
128 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
13141166 |
gtgagtcatctcgcacaagatttgcaaaagagaa |
13141133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 65 - 487
Target Start/End: Complemental strand, 22197723 - 22197302
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
22197723 |
aacaagccaaaaagaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcactggtg |
22197624 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22197623 |
ccataaatacagacaccatactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagg-tgttgccaccagtcatggtaactga |
22197525 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | | |
|
|
| T |
22197524 |
aggcaaaagaatgcaacctagctttaagccactggaatgagagtaatttcactctgtcagatagaatgctaattgatgtagccttctgagtaaaaaagcg |
22197425 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
22197424 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaaaaatggggtaaatccgccatatgtccaaactga |
22197325 |
T |
|
| Q |
465 |
agataatggtctctacatccgac |
487 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
22197324 |
agacaatggtctctacatccgac |
22197302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 65 - 487
Target Start/End: Complemental strand, 37113275 - 37112853
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||| |
|
|
| T |
37113275 |
aacaagtcaaaatggatttcataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaggtcagttcactggtg |
37113176 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37113175 |
ccataaatacagacatcgtgctttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccaccagtcatggtaactga |
37113076 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
37113075 |
aggcaaaagaatgcaacctagctttaagccactggaatgagagtaatttcactctgtcagatagaatgctaattgatgtagacttctgattaaaaatgtg |
37112976 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37112975 |
attgttcctctccttccatgtagtccatacataagcgagccaaattaactgcaaaaaagaatgtgaaaaatggggtaaacccgccatatgtccaaactga |
37112876 |
T |
|
| Q |
465 |
agataatggtctctacatccgac |
487 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
37112875 |
agataatggtctctacatccgac |
37112853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 65 - 481
Target Start/End: Complemental strand, 34015276 - 34014861
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
||||| |||||||| | || ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||| | || ||| | |||| |
|
|
| T |
34015276 |
aacaaaccaaaatggaattaataaccataagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaata-tcggttcatcggtg |
34015178 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||| || ||||||| | |||| ||||||||| |||||||||||||| |||||| |||||| || || ||||||||||||| ||||||||||||| |
|
|
| T |
34015177 |
ccacaataacagacaccgtgatttctaaaccaaaacaaagaagattacatgtaaatactcatacagtacctacggtgttgccaccagtcatggtaactga |
34015078 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
| ||||| ||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |||||||| |||| |||||||||| |||||||||| |
|
|
| T |
34015077 |
aagcaaacgaatgcaacctagttttaagccactggaatgagagtaatttcactttgtcagatatcatgctaattgatgcagccttctgattaaaaatgtg |
34014978 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
|||| |||||||||||| | ||||| |||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
34014977 |
gttgtccctctccttccaaatggtccacacacaagccaggcaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatttccaaactga |
34014878 |
T |
|
| Q |
465 |
agataatggtctctaca |
481 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34014877 |
agataatggtctctaca |
34014861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 65 - 476
Target Start/End: Complemental strand, 6453599 - 6453193
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||| ||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||| ||||||| || |||| |
|
|
| T |
6453599 |
aacaagtcaaaatggattttataattagaagtgattcatctcgcacaaggtgtgcaaaagagaataacttgaaaactatacaattgtcagttcaccggtg |
6453500 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
|||| |||||| ||| | | |||| || |||| ||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6453499 |
ccatgaatacaaacaccgtaaattcaaaagcaaa-----gaatattacataaaagtatccatacaagacatagggtgttgccaccggtcatggtaactga |
6453405 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
6453404 |
aggcaaaagaatgcaacctagctttaagccactggaaagagagtaatttcactcagtcagatagaatgccaatggatgtagccttctgagtaaaaatgtg |
6453305 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||| |||||||||||||| | |||| ||||| || |||||||||||||||||||||||||||||| | || ||||| |||||||||||||| |||| |
|
|
| T |
6453304 |
attattcctctccttccaaatggtccgcacacaggccagccaaattaactgtaaaaaagaatgtgaaaagtgcggtaatcccgccatatgtccgaactag |
6453205 |
T |
|
| Q |
465 |
agataatggtct |
476 |
Q |
| |
|
| |||||||||| |
|
|
| T |
6453204 |
aaataatggtct |
6453193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 80 - 362
Target Start/End: Original strand, 8683968 - 8684240
Alignment:
| Q |
80 |
attttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtgccataaatacagaca |
179 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||| || ||||| | || |||||||| |||||||||| |
|
|
| T |
8683968 |
attttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttgaaaaggatataattgtcagctcaccggtgccatgaatacagaca |
8684067 |
T |
|
| Q |
180 |
tcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactgaaggcaaaggaaagca |
279 |
Q |
| |
|
| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |
|
|
| T |
8684068 |
ccgtgatttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacatagggtgttgccaccaatcat----------ggcaaaagaatgca |
8684157 |
T |
|
| Q |
280 |
acctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatg |
362 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |
|
|
| T |
8684158 |
acctacctttaaaccactagaatgagagtaatttcactatgtcagatagaataccaatggatgtagccttctgagtaaaaatg |
8684240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 8950414 - 8950467
Alignment:
| Q |
202 |
aagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcat |
255 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
8950414 |
aagaagattacatgaatatacccatacaagacatatggtgttgccactaatcat |
8950467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 35463530 - 35463488
Alignment:
| Q |
221 |
acccatacaagacatagggtgttgccaccaatcatggtaactg |
263 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
35463530 |
acccatacacaacatagggtgtttccaccaatcatggtaactg |
35463488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 65 - 483
Target Start/End: Original strand, 2775 - 3190
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||| ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
2775 |
aacaagccaaaatggatttcataac---aagtgattcatctcgcacaatgtgtgcaaaagagaatcacttgaaaacgatacaaaagtcagttcactggtg |
2871 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2872 |
ccataaatacagacatcgtgctttcacaaccaaaacaaagaagattatatgaaaatactcatacaagacatagggtgttgccaccagtcatggtaactga |
2971 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
||||||| ||| |||||| |||||||||| | | ||||||||||||||||||| |||| |||| ||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
2972 |
aggcaaaagaatgcaacccagctttaagctattggaatgagagtaatttcactttgtcggatagaatgctaattgatgtagccttatgagtaaaagtgtg |
3071 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || |
|
|
| T |
3072 |
attgttcctctccttccaagaccagcatacacaagcgagccaaattaactgtaaaaaagaatgtgaaatatgcagtaaacccgcaatatgtccaaaccga |
3171 |
T |
|
| Q |
465 |
agataatggtctctacatc |
483 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
3172 |
agataatggtctctacatc |
3190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 65 - 481
Target Start/End: Complemental strand, 12336240 - 12335825
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||| | |||||| | |||| |
|
|
| T |
12336240 |
aacaagccaaaatgaaattaataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcatttaaaacagatacaata-tcagttcatcggtg |
12336142 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||| || |||||| | | || | ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12336141 |
ccacaataccagacaccgagattactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatatggtgttgccaccagtcatggtaactga |
12336042 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||||||| | |
|
|
| T |
12336041 |
aagcaaacgaatgcaacctagctttaagccactggaatgagagtaatttcactttgtcaggtatcatgctaattgatgtagccttctgattaaaaatgcg |
12335942 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
12335941 |
gttgttcctctccttccaaatggtccacacacaagccagccaaattaactgtaaacaagaatgtgaaaaatgcgttaaacccgccatatgtccaaactga |
12335842 |
T |
|
| Q |
465 |
agataatggtctctaca |
481 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
12335841 |
agataatggtctctaca |
12335825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 462
Target Start/End: Original strand, 22022151 - 22022263
Alignment:
| Q |
354 |
gtaaaaatgtgattgttcctctccttccatgtagtccatacacaagcgagccaaattaactgt----aaaaaagaatgtgaagaatggggtaaacccgcc |
449 |
Q |
| |
|
|||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| | |
|
|
| T |
22022151 |
gtaaaattgcgattgttcctctccttccaagtggtccacacacaagcgagccaaattaactgtaaaaaaaaaagaatgtgaaaaatgtggtaaacccgtc |
22022250 |
T |
|
| Q |
450 |
atatgtccaaact |
462 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
22022251 |
atatgttcaaact |
22022263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 17216679 - 17216725
Alignment:
| Q |
86 |
taaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
17216679 |
taaccaaaagcgattcatctcgcacaagatgtgcaaaagaaaatcac |
17216725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 25739969 - 25740006
Alignment:
| Q |
95 |
gtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
25739969 |
gtgattcatctcgcacaagacgtgcaaaagagaatcac |
25740006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 85 - 480
Target Start/End: Original strand, 13014080 - 13014474
Alignment:
| Q |
85 |
ataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtgccataaatacagacatcaaa |
184 |
Q |
| |
|
|||||||||||||| || ||||||||| | |||||||||||||||||||| ||| |||||||| ||||||| || ||||||||||| ||||||| | |
|
|
| T |
13014080 |
ataaccagaagtgattcgtctcgcacagg-tgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgccataaacacagacaccgtg |
13014178 |
T |
|
| Q |
185 |
ctttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactgaaggcaaaggaaagcaaccta |
284 |
Q |
| |
|
||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| | |||||||| |
|
|
| T |
13014179 |
atttcaaaaccaaaacaataaagattacataaaaatacccatacaagacatagggtgttgccaccagtcagggtaactgaaagcaaacatatgcaaccta |
13014278 |
T |
|
| Q |
285 |
gctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtgattgttcctctccttccatg |
384 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| ||| || |||||| || |||||||| ||| |||||||||| ||||||||||| ||||| |
|
|
| T |
13014279 |
gctttaagccactcgaatgaaagtaatttcactctgtcaaatataacgctaattgaagtagccttttgattaaaaatgtggttgttcctctcattccaaa |
13014378 |
T |
|
| Q |
385 |
tagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactgaagataatggtctctac |
480 |
Q |
| |
|
| ||||| |||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13014379 |
tcgtccacacacaagcaagccaaattaattgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatgtccaaactgaagataatggtctctac |
13014474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 38472759 - 38472900
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||| || |
|
|
| T |
38472759 |
aacaaggcaaaatggatttcataaccagaagtgattcatctcgcacaagatgtgcaaaaaagaatcacttaaaaacgatacaaaattcagttctctgatg |
38472858 |
T |
|
| Q |
165 |
ccataaatacagaca-tcaaactttcacaaccaaaaccaaga |
205 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
38472859 |
ccataaatacagacattcgtactttcacaaccaaaacaaaga |
38472900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 65 - 318
Target Start/End: Original strand, 55339402 - 55339655
Alignment:
| Q |
65 |
aacaagccaaaatg-aattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggt |
163 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| || ||| |
|
|
| T |
55339402 |
aacaagccaaaatgtaattaaattaccagaagtaattcatctcgcacaaggtgtgcaaaagagaatcacttaaatca-atacaat-gtcagttcaccggt |
55339499 |
T |
|
| Q |
164 |
gccataaatacagacatcaaactttcacaaccaaaaccaa-gaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaact |
262 |
Q |
| |
|
| | ||| || || || ||||| | |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| | |
|
|
| T |
55339500 |
ggcgcaaacgcaaccagcatggtttcagatccaaaaacaaagaagattacatgaatatacccatacaagacatagggtgttgccaccagtcatgataatt |
55339599 |
T |
|
| Q |
263 |
gaaggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactc |
318 |
Q |
| |
|
||| ||||| | | | | ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
55339600 |
gaaagcaaacacatgtagtttggcttttagccactggaatgagagtaatttcactc |
55339655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 30187269 - 30187307
Alignment:
| Q |
94 |
agtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
30187269 |
agtgattcatctcgcacaaggtgtgcaaaagagaatcac |
30187307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 32649269 - 32649231
Alignment:
| Q |
95 |
gtgagtcatctcgcacaagatgtgcaaaagagaatcact |
133 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
32649269 |
gtgattcatctcgcataagatgtgcaaaagagaatcact |
32649231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 45300301 - 45300338
Alignment:
| Q |
101 |
catctcgcacaagatgtgcaaaagagaatcacttaaaa |
138 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
45300301 |
catctcgcacaagacgtgcaaaagagaatcacctaaaa |
45300338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 72 - 484
Target Start/End: Original strand, 25599203 - 25599615
Alignment:
| Q |
72 |
caaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtgccataaa |
171 |
Q |
| |
|
||||||| | || ||||||| |||||| |||||| ||||||| |||||||||||||||||||| ||| |||||||| ||||||| || ||||||| ||| |
|
|
| T |
25599203 |
caaaatggaattaataaccataagtgattcatcttgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtgccacaaa |
25599302 |
T |
|
| Q |
172 |
tacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactgaaggcaaa |
271 |
Q |
| |
|
||| ||||| ||||| ||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||| | ||||| |
|
|
| T |
25599303 |
cacaaacatcgtgatttcaaaaccaaagcaaagaagattacataaaaatacccatacaagacatagggtgttgccactagtcatggtaactgcaagcaaa |
25599402 |
T |
|
| Q |
272 |
ggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtgattgttc |
371 |
Q |
| |
|
| ||||||||||||||||||||| |||||| |||||||||||| ||||||||| | |||||| ||||||||||||||| ||||||||| |||||| |
|
|
| T |
25599403 |
catatgcaacctagctttaagccactggaatgaaagtaatttcactttgtcagatatgacgctaattgatgtagccttctgattaaaaatgtagttgttc |
25599502 |
T |
|
| Q |
372 |
ctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactgaagataat |
471 |
Q |
| |
|
||||||||||| | ||||| || ||||| | ||||||||||||||||||||| |||||| |||| |||| ||||||||||| |||||||||||||||| |
|
|
| T |
25599503 |
ctctccttccaaattgtccacacgcaagccaaccaaattaactgtaaaaaagattgtgaaaaatgtcgtaagcccgccatatgcccaaactgaagataat |
25599602 |
T |
|
| Q |
472 |
ggtctctacatcc |
484 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
25599603 |
ggtcactacatcc |
25599615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 65 - 295
Target Start/End: Original strand, 16238689 - 16238919
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
16238689 |
aacaagccaaaatgaattttataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgaaacaaaagtcagttcactggtg |
16238788 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
16238789 |
ccataaatacagacatcaaactttcacaaccaaaacaaagaagattacatgaaaatacccatacaagacatagggtgttgccactagtcatgataactga |
16238888 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagcca |
295 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| |
|
|
| T |
16238889 |
aggcaaaagaatgcaacctagctttaagcca |
16238919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 65 - 484
Target Start/End: Original strand, 36964466 - 36964883
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||| | || ||||||| ||| || || ||||||| ||| |||||||||||||||||||| ||| ||||||| ||||||| || |||| |
|
|
| T |
36964466 |
aacaagccaaaatggaattaataaccaaaagagattcgtctcgcagaaggtgtgcaaaagagaatcacttcaaacatatacaaatgtcagttcaccggtg |
36964565 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
|| |||| | ||||| | ||||| ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
36964566 |
ccgtaaacatagacaccgtgttttcaaaaccaaaacaaagaagattacataaaaatacccatacaagacatag--tgttgccatcagtcatggtaactga |
36964663 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
| ||||| | ||||||||||||||||||||| ||||| |||| ||||||||| |||||| || |||||| || |||||||||||| |||||||||| |
|
|
| T |
36964664 |
aagcaaacatatgcaacctagctttaagccactgaaatgaaagtactttcactctatcagatttaacgctaattgaagtagccttctgattaaaaatgtg |
36964763 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactga |
464 |
Q |
| |
|
||||||||||||||||| | ||||| |||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
36964764 |
gttgttcctctccttccaaattgtccacacacaagccagtcaaattaactgtaaaaaagaatgtgaaaaatgcggtaaacccgccatatgttcaaactga |
36964863 |
T |
|
| Q |
465 |
agataatggtctctacatcc |
484 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
36964864 |
agataatggtctcaacatcc |
36964883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 22670007 - 22670141
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
22670007 |
aacaagccaaaatgaattttataaccagaagtgagtaatctcgcacaaggtgtgcaaaagagaatcacttaaaaacgatacaaaagtcaattcgctggtg |
22670106 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
22670107 |
ccataaatacagacatcaaactttcacaaccaaaa |
22670141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 45066113 - 45066013
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |
|
|
| T |
45066113 |
aacaagccaaattgaattttataacgagaagtgattcatctcgcataagatgtgcaaaagagaatcacttaaaaacgatacaaaagtcagttcattggtg |
45066014 |
T |
|
| Q |
165 |
c |
165 |
Q |
| |
|
| |
|
|
| T |
45066013 |
c |
45066013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 354 - 462
Target Start/End: Original strand, 44332259 - 44332371
Alignment:
| Q |
354 |
gtaaaaatgtgattgttcctctccttccatgtagtccatacacaagcgagccaaattaactgt----aaaaaagaatgtgaagaatggggtaaacccgcc |
449 |
Q |
| |
|
|||||| || ||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| | |
|
|
| T |
44332259 |
gtaaaattgcgattgttcctctccttccaagtggtccacacacaagcgagccaaattaactgtaaaaaaaaaagaatgtgaaaaatgtggtaaacccgtc |
44332358 |
T |
|
| Q |
450 |
atatgtccaaact |
462 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
44332359 |
atatgttcaaact |
44332371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 959909 - 959859
Alignment:
| Q |
88 |
accagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaa |
138 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
959909 |
accagaagtaattcatctcgcacaagatgtgcaaaagagaatcacttaaaa |
959859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 26311189 - 26311135
Alignment:
| Q |
94 |
agtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaa |
148 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
26311189 |
agtgattcatctcgcacaaggtgtgcaaaagagaatcacctaaaaagaatacaaa |
26311135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 31807695 - 31807647
Alignment:
| Q |
100 |
tcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
31807695 |
tcatctcgcacaagatgtgcaaaagagaatcatccaaaaataatacaaa |
31807647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 11002458 - 11002389
Alignment:
| Q |
65 |
aacaagccaaaatgaattttata--accagaagtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||||||||||||||| | |||| |||| ||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
11002458 |
aacaagccaaaatgaaatgtatattaccactagtgattcatctcgcacaaggcgtgcaaaagagaatcac |
11002389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 65 - 480
Target Start/End: Original strand, 27420339 - 27420769
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
||||||||||||| | || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||| || |||| |
|
|
| T |
27420339 |
aacaagccaaaatagaattaataaccagaagtgattcatctcgcacaaggtgtgcaaaagagaatcacttcaaacagatacaaatgtcagttcaccggtg |
27420438 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||| || |||||| | ||| ||||||||| || |||||||||| ||||||||||||||||| ||| | ||||||||| ||||||||||||||| |
|
|
| T |
27420439 |
ccacaagcacagactctgtgatctcaaaaccaaaacaaaaaagattacataaaaatacccatacaagatataagttgttgccac-aatcatggtaactga |
27420537 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtg |
364 |
Q |
| |
|
| |||| | ||||||||||||||||||||| |||||| |||||||||||||||||||| | || |||||| ||||||||||||||| |||||||||| |
|
|
| T |
27420538 |
aaacaaacatatgcaacctagctttaagccactggaatgaaagtaatttcactctgtcagacataacgctaattgatgtagccttctgattaaaaatgtg |
27420637 |
T |
|
| Q |
365 |
attgttcctctccttccatgtagtccatacacaagcgagccaaattaactg----------------taaaaaagaatgtgaagaatggggtaaacccgc |
448 |
Q |
| |
|
||||||||||||||||| | || || ||| |||| |||||||||||||| ||||||||||||| || |||| ||||||||||| |
|
|
| T |
27420638 |
gttgttcctctccttccaaattgttcacacataagccagccaaattaactgtaaaaaaaaaacactataaaaaagaatgtaaaaaatgcggtaaacccgc |
27420737 |
T |
|
| Q |
449 |
catatgtccaaactgaagataatggtctctac |
480 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
27420738 |
catatgtccaaactaaagataatggtctctac |
27420769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 42747303 - 42747271
Alignment:
| Q |
100 |
tcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
42747303 |
tcatctcgcacaaggtgtgcaaaagagaatcac |
42747271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 65 - 353
Target Start/End: Original strand, 9064537 - 9064824
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
|||||||||||||| | || ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| | |||||| | |||| |
|
|
| T |
9064537 |
aacaagccaaaatggaattaataaccataagtgattcatctcgcacaaagtgtgcaaaagagaatcacttaaaaaagatacaata-tcagttcatcggtg |
9064635 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
||| || | |||| || || | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9064636 |
ccacaatacccgacaccatgattactaaaccaaaacaaagaagattacatgtaaatacccatacaagacatagggtgttgccaccagtcatggtaactga |
9064735 |
T |
|
| Q |
265 |
aggcaaaggaaagcaacctagctttaagccactagaatgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctga |
353 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||| ||||||||||||||| |
|
|
| T |
9064736 |
aagcaaacgaatgcaacctagctttaagccactggaatgagagtaatttcactttgtcagatatcatcctaattgatgtagccttctga |
9064824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 10932507 - 10932441
Alignment:
| Q |
67 |
caagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcact |
133 |
Q |
| |
|
|||||||||||||| || ||||||| || ||| |||||||||| ||||| | ||||||||||||||| |
|
|
| T |
10932507 |
caagccaaaatgaaattaataaccaaaaatgattcatctcgcataagatatacaaaagagaatcact |
10932441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 8441960 - 8441920
Alignment:
| Q |
7 |
atattgttggtatgttaattcagattcaaattttaaaatgg |
47 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8441960 |
atattgttggcttgttaattcagattcaaattttaaaatgg |
8441920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 22099169 - 22099132
Alignment:
| Q |
95 |
gtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
22099169 |
gtgattcatctcgcacaaggtgtgcaaaagagaatcac |
22099132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 65 - 271
Target Start/End: Original strand, 38478 - 38684
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaaagagaatcacttaaaaatgatacaaaagtcagtttactggtg |
164 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||| | ||| || ||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
38478 |
aacaagccacaatgaattttataatcagaaatgatttatcccgtacaaggtgtgcaaaagagaatcacttaaaaacgatacaattgtcagttcactggtg |
38577 |
T |
|
| Q |
165 |
ccataaatacagacatcaaactttcacaaccaaaaccaagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactga |
264 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||| || |||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
38578 |
ccatgaatacagacatcgtgatttcaaaaccaaaacaaataagattacataaaaatactcatacaagacatagggtgttaccacctgtcatggtaactga |
38677 |
T |
|
| Q |
265 |
aggcaaa |
271 |
Q |
| |
|
| ||||| |
|
|
| T |
38678 |
aagcaaa |
38684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 477
Target Start/End: Original strand, 48477104 - 48477380
Alignment:
| Q |
201 |
caagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactgaaggcaaaggaaagcaacctagctttaagccactaga |
300 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||| |||| |||||||||||| ||||||||||| || ||||| ||| | || ||||||| ||||| | | |
|
|
| T |
48477104 |
caagaagattgcatgaaaatactcattcaagatatagagtgttgccaccagtcatggtaactcaaagcaaacgaatgtaaattagcttttagccagtgaa |
48477203 |
T |
|
| Q |
301 |
atgagagtaatttcactctgtcagataaaatgctaatcgatgtagccttctgagtaaaaatgtgattgttcctctccttccatgtagtccatacacaagc |
400 |
Q |
| |
|
|||| |||| |||||| |||| | || | || |||| |||||||| |||||| |||||||||||||||| ||||||||||| | ||||| ||||||| |
|
|
| T |
48477204 |
atgaaagtagtttcaccatgtctgctatattgttaattgatgtagcattctgattaaaaatgtgattgtttctctccttccaaatggtccaagcacaagc |
48477303 |
T |
|
| Q |
401 |
gagccaaattaactgtaaaaaagaatgtgaagaatggggtaaacccgccatatgtccaaactgaagataatggtctc |
477 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||| ||||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
48477304 |
cagccatattatatgtaaaaaagaatgtgaaaaatgcggtaatccagccaaatgcccaaactgaagataatggtctc |
48477380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 16237049 - 16236992
Alignment:
| Q |
65 |
aacaagccaaaatgaattttataaccagaagtgagtcatctcgcacaagatgtgcaaa |
122 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
16237049 |
aacaagccaaaatgaatttcataatcagaagtgattcatctcgcacaaagtgtgcaaa |
16236992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 27895536 - 27895499
Alignment:
| Q |
95 |
gtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27895536 |
gtgattcatctcgcacaaggtgtgcaaaagagaatcac |
27895499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 14048 - 14117
Alignment:
| Q |
202 |
aagaagattacatgaaaatacccatacaagacatagggtgttgccaccaatcatggtaactgaaggcaaa |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14048 |
aagaagattacattaaaatacccatacaagatatagggtgttgccaccagtcatggtaactgaaagcaaa |
14117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0343; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 481
Target Start/End: Original strand, 14188 - 14283
Alignment:
| Q |
387 |
gtccatacacaagcgagccaaattaactgtaaaaa-agaatgtgaagaatggggtaaacccgccatatgtccaaactgaagataatggtctctaca |
481 |
Q |
| |
|
||||| |||||||| ||||||| || ||||||||| ||||| |||| || | ||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
14188 |
gtccacacacaagccagccaaactatctgtaaaaagagaatttgaataacgcggtaaacccgccatatgtccaaacttaagaaaatggtctctaca |
14283 |
T |
|
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Target: scaffold1951 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1951
Description:
Target: scaffold1951; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 480 - 518
Alignment:
| Q |
94 |
agtgagtcatctcgcacaagatgtgcaaaagagaatcac |
132 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
480 |
agtgattcatctcgcacaaggtgtgcaaaagagaatcac |
518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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