View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_12 (Length: 208)
Name: NF5714_low_12
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_12 |
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| [»] scaffold0526 (1 HSPs) |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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| [»] scaffold1892 (1 HSPs) |
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| [»] scaffold1178 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 188109 - 188167
Alignment:
| Q |
19 |
atatttaatggcaaaggttatatgtaatcataaatcacaaataaatcgtcaattatatg |
77 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
188109 |
atatttaatggcaaaggttatatgtaatcataaatcacgaataaatcgtcaattatatg |
188167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 188235 - 188287
Alignment:
| Q |
137 |
ccacttgcaccatttccattgtctgtcttctatatcttcaaacacatcaaact |
189 |
Q |
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| T |
188235 |
ccacttgcaccatttccattgtctgtcttctatatcttcagacacatcaaact |
188287 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 55475934 - 55475873
Alignment:
| Q |
19 |
atatttaatggcaaaggttatatgtaatcataaatcacaaataaatcgtcaattatatgaat |
80 |
Q |
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| T |
55475934 |
atatttaatggcaaagtttatattcaatcataaatcacgaataaatcgtcaattatatgaat |
55475873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0526 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0526
Description:
Target: scaffold0526; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 8101 - 8041
Alignment:
| Q |
19 |
atatttaatggcaaaggttatatgtaatcataaatcacaaataaatcgtcaattatatgaa |
79 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||| |
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| T |
8101 |
atatttaatggcaaagcttatatgtaatcataaatcacgaatatatcgccaattatatgaa |
8041 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 40541980 - 40542023
Alignment:
| Q |
36 |
ttatatgtaatcataaatcacaaataaatcgtcaattatatgaa |
79 |
Q |
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|||||||||||||||| |||| ||||||||| |||||||||||| |
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| T |
40541980 |
ttatatgtaatcataagtcacgaataaatcgccaattatatgaa |
40542023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 5401 - 5439
Alignment:
| Q |
39 |
tatgtaatcataaatcacaaataaatcgtcaattatatg |
77 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||||| |
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| T |
5401 |
tatgcaatcataaatcacaaagaaatcgtcaattatatg |
5439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 2717 - 2679
Alignment:
| Q |
39 |
tatgtaatcataaatcacaaataaatcgtcaattatatg |
77 |
Q |
| |
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|||| |||||||||||||||| ||||||||||||||||| |
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| T |
2717 |
tatgcaatcataaatcacaaagaaatcgtcaattatatg |
2679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1892 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1892
Description:
Target: scaffold1892; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 1258 - 1218
Alignment:
| Q |
37 |
tatatgtaatcataaatcacaaataaatcgtcaattatatg |
77 |
Q |
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|
|||||| |||||||||||||||| |||||| |||||||||| |
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| T |
1258 |
tatatgcaatcataaatcacaaagaaatcgccaattatatg |
1218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1178
Description:
Target: scaffold1178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 269 - 229
Alignment:
| Q |
37 |
tatatgtaatcataaatcacaaataaatcgtcaattatatg |
77 |
Q |
| |
|
|||||| |||||||||||||||| |||||| |||||||||| |
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| T |
269 |
tatatgcaatcataaatcacaaagaaatcgccaattatatg |
229 |
T |
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