View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_2 (Length: 432)
Name: NF5714_low_2
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 432
Target Start/End: Original strand, 36603999 - 36604416
Alignment:
| Q |
15 |
cagagacagtgaagttggacacagagattgagctgactcgaaaatgaggtttatgtgggtccatgacattccaagctatagcgatgatgacagttaaagt |
114 |
Q |
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| T |
36603999 |
cagagacagtgaagttggacacagagattgagctgactcgaaaatgagttttatgtgggtccatgacattccaagctatagcgatgatgacagttaaagt |
36604098 |
T |
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| Q |
115 |
gagaaagagtaaaatgaatgtccaggtaagtcgacggactacaccgagagtagaggaccccggtgtcctagaagaagcattggtgctggtatgaggaggc |
214 |
Q |
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| T |
36604099 |
gagaaagagtaaaatgaatgtccaggtaagtcgacggactacaccgagagtagaggaccccggtgtcctagaagaagcattggtgctggtatgaggaggc |
36604198 |
T |
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| Q |
215 |
tgaggctccatgtaaattttggaatgaagttgggtatgtggtaggagttatgctatagctagtagtataaacaaaattttggaacagagcttttagtatt |
314 |
Q |
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| T |
36604199 |
tgaggctccatgtaaattttggaatgaagctgggtatgtggtaggagttatgctatagctagtagtataaacaaaattttggaacagagcttttagtatt |
36604298 |
T |
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| Q |
315 |
gtctctctttagcaacatacaatctttaaggggaatgtatattgttaaagacagaaagggaaagtaggacaatgaatatatgtgataattgcaaaaggtg |
414 |
Q |
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| T |
36604299 |
gtctctctttagcaacaaacaatctttaaggggaatgtatattgttaaagacagaaagggaaagtaggacaatgaatatatgtgataattgcaaaaggtg |
36604398 |
T |
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| Q |
415 |
aggtatatatatttatat |
432 |
Q |
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| T |
36604399 |
aggtatatatatttatat |
36604416 |
T |
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