View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_3 (Length: 335)
Name: NF5714_low_3
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 6399479 - 6399789
Alignment:
| Q |
18 |
atcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399479 |
atcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatca |
6399578 |
T |
|
| Q |
118 |
ccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6399579 |
ccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatga |
6399678 |
T |
|
| Q |
218 |
agccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399679 |
agccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttc |
6399778 |
T |
|
| Q |
318 |
cagaataatct |
328 |
Q |
| |
|
|||| |||||| |
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|
| T |
6399779 |
cagactaatct |
6399789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 6413023 - 6412713
Alignment:
| Q |
18 |
atcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6413023 |
atcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttcccatca |
6412924 |
T |
|
| Q |
118 |
ccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaagtctatga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6412923 |
ccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccttctccattgaacatttccataaactctttaaagtctatga |
6412824 |
T |
|
| Q |
218 |
agccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412823 |
agccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttatactcttc |
6412724 |
T |
|
| Q |
318 |
cagaataatct |
328 |
Q |
| |
|
|||| |||||| |
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|
| T |
6412723 |
cagactaatct |
6412713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 6410284 - 6409970
Alignment:
| Q |
11 |
catcatcatcaacccctttcaccattttcttacaagcactaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaatttt |
110 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
6410284 |
catcaccatcgacacctttcaccattttcttacaagcactaaggctgcaactctctcctaacctcttaaatatttgagacaattcctcagcactgatttt |
6410185 |
T |
|
| Q |
111 |
cccatcaccatttatatcaaatacttgaaaagcactcttaatatcttcttcttttatcttactaccctctccattgaacatttccataaactctttaaag |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||||||| |||||||||||| |
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|
| T |
6410184 |
cccatctccatttatatcaaatacttgaaaagcactcttaatctcctcttcttttatcttattgttttctccattgaacatttccatgaactctttaaag |
6410085 |
T |
|
| Q |
211 |
tctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataatccccttatccaaagcttttgcagctgctttat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||| |
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| T |
6410084 |
tctatgaagccatctttgtcagagtccatcacgttaaatgctttcactgcatcaggatccc---caatccccttatccaaagattttgcagctgctttat |
6409988 |
T |
|
| Q |
311 |
actcttccagaataatct |
328 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
6409987 |
actcttccagactaatct |
6409970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 6405258 - 6405396
Alignment:
| Q |
178 |
tctccattgaacatttccataaactctttaaagtctatgaagccatctttgtcagagtccattgctttaaatgctttcactgcatcattgtcacaaataa |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| | || | | |
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| T |
6405258 |
tctccattgaacatttccataaactctctaaagtctatgaatccatctttgtcatagtccatggccttaaatgctttcactgcatcagtatccc---cta |
6405354 |
T |
|
| Q |
278 |
tccccttatccaaagcttttgcagctgctttatactcttcca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6405355 |
cccccttatccaaagcttttgcagctgctttatactcttcca |
6405396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 6403009 - 6403072
Alignment:
| Q |
48 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcctcagcactaattttc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6403009 |
actaaggctacaactctctcctaacctcttaaatatttgagacaattcatcagcactaattttc |
6403072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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