View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5714_low_4 (Length: 325)

Name: NF5714_low_4
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5714_low_4
NF5714_low_4
[»] chr1 (1 HSPs)
chr1 (1-294)||(38336877-38337169)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 38336877 - 38337169
Alignment:
Q  1 tcatcaccaccccacctcatattttctaaccacgacccacccatccaaccttttcgtcaccgttcggcttgagatctggcgtggtggtggtggtttagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||    
T  38336877 tcatcaccaccccacctcatattttctaaccacgacccacccatccaactttttcgtcaccatttggcttgagatctggcgtggtggtggtggtttagat 38336976  T
Q  101 atggcgtgctctgcctaagatctcactggccatggcgttgtcaggtctagattccttctttggcatcagtggttgtagaggacgacgtggtggttctcca 200  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  38336977 ctggcgtgctctgcctaagatctcactggccatggcgttgtcgggtctag-ttccttctttggcagcagtggttgtagagcacgacgtggtggttctcca 38337075  T
Q  201 tggttgtggacagagaagtgtaaaaagattacggagttgacatagagagaacgagaaggaaaggatggagatgatgatgaagggtgggcagagg 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  38337076 tggttgtggacagagaagtgtaaaaagattacggagttgacttagagagaacgagaaggaaaggatggagatgatgatgaagggcgggcggagg 38337169  T

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