View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_5 (Length: 293)
Name: NF5714_low_5
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 6410358 - 6410275
Alignment:
| Q |
207 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatc |
290 |
Q |
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| T |
6410358 |
tatgatgacttaggcacatttcttgccattcatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatc |
6410275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 6399398 - 6399484
Alignment:
| Q |
207 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaac |
293 |
Q |
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| T |
6399398 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaac |
6399484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 6413104 - 6413018
Alignment:
| Q |
207 |
tatgataacttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatcaac |
293 |
Q |
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| T |
6413104 |
tatgataacttaggcacatttcttgccattcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcactatcaac |
6413018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 6402920 - 6402996
Alignment:
| Q |
214 |
acttaggcacatttcttgccatttatcatcattcttgtaaactcattcaaatcaataagaccatctccatcaccatc |
290 |
Q |
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| T |
6402920 |
acttagacacatttcttgccactcatcatcatccttgtaaactcattcaaatcaataagaccatctccatcaccatc |
6402996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 6413294 - 6413244
Alignment:
| Q |
17 |
aagaatgaagatcaccaagcatttaactaacaaaacttatccatcgctcat |
67 |
Q |
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| T |
6413294 |
aagaatgaaaatcaccaagcatttaactaacaaaacttattcatcgctcat |
6413244 |
T |
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