View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_7 (Length: 279)
Name: NF5714_low_7
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 35586559 - 35586282
Alignment:
| Q |
1 |
atagtgagcagttgtattaaaatatgaccatattgttttggagaacggttaaaaagattgtgataatgtgtgaatggtgtttaaatcaaaataataaaag |
100 |
Q |
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| T |
35586559 |
atagtgagcagttgtattaaaatatgaccatattgttttggagaacggttaaaaagattgttataatgtgtgaatggtatttaaatcaaa-taataaaag |
35586461 |
T |
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| Q |
101 |
agtacgagtaagaagttcacacaacaggaaagcgtggcaagcaccccaactatgaaaagactccaaaattggttgttatccatcatcctcgcaatacatc |
200 |
Q |
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| T |
35586460 |
agtacgagtaagaagttcacacaacagaaaagcgtggcaagcaccccaactatgaaaagactccaaaattggttgtcatccaccatcctcgcaatacatc |
35586361 |
T |
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| Q |
201 |
aaaagcatatgagctaaccgataatctatggagcttcaatgctatggtgtgacattcttctcgccaaactctgaaggaa |
279 |
Q |
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| T |
35586360 |
aaaagcatatgagctaaccgataatctatggagcttcaatgctatggtgtgacattcttctcgccaaactctgaaggaa |
35586282 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 41902423 - 41902541
Alignment:
| Q |
5 |
tgagcagttgtattaaaatatgaccatattgttttggagaacggttaaaaagattgtgataatgtgtgaatggtgtttaaatcaaaataataaaagagta |
104 |
Q |
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|||||||||| ||||||||| ||||||| | || ||||| | | ||||||| || ||||| ||||| ||||||||| ||| |||| ||||||||||||| |
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| T |
41902423 |
tgagcagttggattaaaataagaccataatattatggaggatgattaaaaatatcatgatagtgtgtaaatggtgttcaaagcaaa-taataaaagagta |
41902521 |
T |
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| Q |
105 |
cgagtaagaagttcacacaa |
124 |
Q |
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| T |
41902522 |
agggtaagaagatcacacaa |
41902541 |
T |
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