View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5714_low_8 (Length: 266)
Name: NF5714_low_8
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5714_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 103 - 249
Target Start/End: Complemental strand, 21819464 - 21819318
Alignment:
| Q |
103 |
gtagaaatgggtcgtccacgtggaaaattaactttgaaacaaattcaagataaaagagctcggaaattagctttcaatcatagaagcaagagattggcnn |
202 |
Q |
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| T |
21819464 |
gtagaaatgggtcgtccacgtggaaaattaactttgaaacaaattcaagataaaagagctcggaaattagctttcaatcatagaagcaagagattggcaa |
21819365 |
T |
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| Q |
203 |
nnnnngtttctaaattttctaacaagtttggagttgaagcttgcttg |
249 |
Q |
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| T |
21819364 |
aaaaagtttctaaattttctaacaagtttggagttgaagcttgcttg |
21819318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 249
Target Start/End: Original strand, 21875846 - 21875990
Alignment:
| Q |
105 |
agaaatgggtcgtccacgtggaaaattaactttgaaacaaattcaagataaaagagctcggaaattagctttcaatcatagaagcaagagattggcnnnn |
204 |
Q |
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| T |
21875846 |
agaaatgggtcgtgctcgtgggaagttaactttgaaaccaattcaagatgagagagctcggaaattcgctttcaatcagagaaacaataatttggcaaaa |
21875945 |
T |
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| Q |
205 |
nnngtttctaaattttctaacaagtttggagttgaagcttgcttg |
249 |
Q |
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| T |
21875946 |
aaagtttctgatttgtctagaaagtttggagttgaagcttgcttg |
21875990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 248
Target Start/End: Original strand, 21867998 - 21868125
Alignment:
| Q |
121 |
cgtggaaaattaactttgaaacaaattcaagataaaagagctcggaaattagctttcaatcatagaagcaagagattggcnnnnnnngtttctaaatttt |
220 |
Q |
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| T |
21867998 |
cgtgggaaattaactattaaacacattcaagattggaaagctcggaaatcaagtttcaatcagagaagcaatggattggcgaaaaaagtttctgaatttt |
21868097 |
T |
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| Q |
221 |
ctaacaagtttggagttgaagcttgctt |
248 |
Q |
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| T |
21868098 |
ctagcaaatttggagttgaagcttgctt |
21868125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 21819553 - 21819525
Alignment:
| Q |
14 |
aaataccaagagaattagagcctaacata |
42 |
Q |
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| T |
21819553 |
aaataccaagagaattagagcctaacata |
21819525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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