View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5714_low_9 (Length: 249)

Name: NF5714_low_9
Description: NF5714
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5714_low_9
NF5714_low_9
[»] chr6 (9 HSPs)
chr6 (3-234)||(24333831-24334062)
chr6 (13-78)||(8597709-8597774)
chr6 (11-78)||(6385909-6385976)
chr6 (13-78)||(23242035-23242100)
chr6 (11-78)||(12188265-12188332)
chr6 (31-78)||(18263907-18263954)
chr6 (11-78)||(20213088-20213155)
chr6 (11-78)||(22107111-22107178)
chr6 (1-78)||(24507498-24507575)
[»] chr4 (21 HSPs)
chr4 (11-78)||(46295144-46295211)
chr4 (1-78)||(5795370-5795448)
chr4 (13-78)||(2732043-2732108)
chr4 (11-78)||(23378003-23378070)
chr4 (2-78)||(30938181-30938257)
chr4 (1-75)||(8325344-8325418)
chr4 (32-78)||(26356885-26356931)
chr4 (1-78)||(32992649-32992726)
chr4 (1-78)||(51622522-51622599)
chr4 (11-75)||(19238542-19238606)
chr4 (11-78)||(56440448-56440516)
chr4 (11-78)||(7292760-7292827)
chr4 (11-78)||(7949416-7949483)
chr4 (11-78)||(8030166-8030233)
chr4 (11-78)||(9693460-9693527)
chr4 (7-78)||(51954157-51954228)
chr4 (1-75)||(21344854-21344927)
chr4 (11-72)||(44865381-44865442)
chr4 (2-78)||(38838835-38838911)
chr4 (11-75)||(39509117-39509181)
chr4 (11-75)||(55427165-55427229)
[»] chr8 (16 HSPs)
chr8 (1-78)||(26688902-26688979)
chr8 (11-75)||(2203539-2203603)
chr8 (1-78)||(11793483-11793560)
chr8 (11-78)||(6536567-6536634)
chr8 (11-78)||(11819823-11819890)
chr8 (11-78)||(28783107-28783174)
chr8 (11-78)||(28787458-28787525)
chr8 (11-72)||(35287763-35287824)
chr8 (11-78)||(968409-968476)
chr8 (11-78)||(16852387-16852454)
chr8 (11-78)||(33727835-33727902)
chr8 (11-78)||(40872923-40872990)
chr8 (11-78)||(44780076-44780143)
chr8 (11-72)||(23361617-23361678)
chr8 (38-78)||(3078607-3078647)
chr8 (14-78)||(43594280-43594344)
[»] chr7 (17 HSPs)
chr7 (13-78)||(279916-279981)
chr7 (11-78)||(11720922-11720989)
chr7 (11-76)||(38374563-38374628)
chr7 (11-78)||(5273552-5273619)
chr7 (11-78)||(17040974-17041041)
chr7 (11-78)||(19553500-19553567)
chr7 (2-78)||(31835230-31835306)
chr7 (8-78)||(20468286-20468356)
chr7 (11-78)||(21558175-21558242)
chr7 (7-78)||(39631887-39631958)
chr7 (11-78)||(43590954-43591021)
chr7 (16-78)||(41487411-41487473)
chr7 (1-66)||(2882987-2883052)
chr7 (1-78)||(5579196-5579273)
chr7 (11-72)||(18056743-18056804)
chr7 (1-78)||(48125137-48125213)
chr7 (11-75)||(42712005-42712069)
[»] chr5 (9 HSPs)
chr5 (1-78)||(16457847-16457924)
chr5 (11-66)||(30883172-30883227)
chr5 (11-75)||(18974007-18974071)
chr5 (11-78)||(28285299-28285366)
chr5 (11-78)||(84871-84938)
chr5 (31-78)||(4793042-4793089)
chr5 (11-78)||(35360048-35360115)
chr5 (20-78)||(35705042-35705100)
chr5 (46-78)||(18206608-18206640)
[»] chr2 (13 HSPs)
chr2 (1-78)||(41908600-41908677)
chr2 (1-77)||(30359691-30359766)
chr2 (11-78)||(37480122-37480189)
chr2 (11-78)||(42327357-42327424)
chr2 (11-78)||(12086091-12086158)
chr2 (11-78)||(21195638-21195705)
chr2 (11-78)||(23052485-23052552)
chr2 (11-78)||(42602601-42602668)
chr2 (1-72)||(45672346-45672417)
chr2 (33-78)||(31159599-31159644)
chr2 (14-78)||(21213819-21213883)
chr2 (7-71)||(36176780-36176844)
chr2 (11-75)||(39715039-39715103)
[»] chr1 (19 HSPs)
chr1 (1-78)||(31605810-31605887)
chr1 (1-78)||(36428749-36428826)
chr1 (11-75)||(45266881-45266945)
chr1 (11-75)||(51814541-51814605)
chr1 (1-75)||(43446000-43446074)
chr1 (11-78)||(6122841-6122908)
chr1 (11-78)||(15065012-15065079)
chr1 (11-78)||(40257446-40257513)
chr1 (11-78)||(44961812-44961879)
chr1 (11-78)||(52116743-52116810)
chr1 (13-78)||(39966142-39966207)
chr1 (11-78)||(2799909-2799976)
chr1 (11-78)||(3799953-3800020)
chr1 (11-78)||(8177144-8177211)
chr1 (11-78)||(24019070-24019137)
chr1 (11-78)||(51281398-51281465)
chr1 (1-78)||(17297021-17297099)
chr1 (1-78)||(19940834-19940911)
chr1 (13-78)||(30203189-30203254)
[»] chr3 (18 HSPs)
chr3 (11-76)||(19716244-19716309)
chr3 (2-78)||(44069796-44069872)
chr3 (2-78)||(47454579-47454655)
chr3 (11-78)||(8075089-8075156)
chr3 (11-78)||(30715789-30715855)
chr3 (11-78)||(44743817-44743884)
chr3 (11-78)||(4844473-4844540)
chr3 (11-78)||(4870169-4870236)
chr3 (11-78)||(14339657-14339724)
chr3 (11-78)||(20501743-20501809)
chr3 (11-74)||(30232377-30232440)
chr3 (11-78)||(36720428-36720495)
chr3 (1-70)||(37944769-37944836)
chr3 (11-76)||(47236935-47237000)
chr3 (11-72)||(53412992-53413053)
chr3 (7-75)||(28531023-28531091)
chr3 (50-78)||(28766519-28766547)
chr3 (7-78)||(40063662-40063734)
[»] scaffold0172 (1 HSPs)
scaffold0172 (7-78)||(15739-15810)
[»] scaffold0118 (1 HSPs)
scaffold0118 (7-78)||(41595-41666)
[»] scaffold0337 (1 HSPs)
scaffold0337 (1-78)||(1790-1867)
[»] scaffold0260 (1 HSPs)
scaffold0260 (11-44)||(15316-15349)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 24334062 - 24333831
Alignment:
Q  3 ttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttcttnnnnnnntaataattgataacttc 102  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  24334062 ttgcagtatgctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagtttagcttcttaaaaaaataataattgataacttc 24333963  T
Q  103 gggtcagaactagtttcctcatatgtgtaatgctgaaaattgtggtgactacaaagaaagttgttgggaataaagtctgtattttattgtcgaatgttaa 202  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24333962 gggccataactagtttcctcatatgtgtaatgctgaaaattgtggtgactacaaagaaagttgttgggaaaaaagtctgtattttattgtcgaatgttaa 24333863  T
Q  203 gtgacatgaaacttcgatcacatgcttaggat 234  Q
    ||||||||||||||||||||||||||||||||    
T  24333862 gtgacatgaaacttcgatcacatgcttaggat 24333831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 8597774 - 8597709
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  8597774 ctcctcctcaaggtctcaagttcaattctctccagtgccaatttgggtgggctaatttagcttctt 8597709  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6385909 - 6385976
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||| ||||| || ||||| |||||| || |||| ||||||||||||||| |||||||||||    
T  6385909 tgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaatttagcttctt 6385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 23242035 - 23242100
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||||  | ||| |  ||||| || ||||||||||||||||||||||||||||||||    
T  23242035 ctcctcctcaaggtcacaggtccggttctccccggtgccaatttgggtgggctagtttagcttctt 23242100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 12188332 - 12188265
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| ||  |||| |||||| | |||||||||||| | ||| ||||||||||||||    
T  12188332 tgctcctcctcaaggtttcaagttcgattctctctagtgccaatttgagggggttagtttagcttctt 12188265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 18263907 - 18263954
Alignment:
Q  31 ggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  18263907 ggttcgattctccccagtgccaatttaggtgggctaatttagcttctt 18263954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 20213088 - 20213155
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||| | | |||| |||||||||||||||| |||||||||||    
T  20213088 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 20213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 22107111 - 22107178
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||| | | |||| |||||||||||||||| |||||||||||    
T  22107111 tgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 22107178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24507575 - 24507498
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| |  |||||||||||| || ||  |||||| |||||| ||||||| ||||||    
T  24507575 ccttggagtttgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttctt 24507498  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 46295144 - 46295211
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| || ||||||||||||||||||||||||||||||||    
T  46295144 tgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5795448 - 5795370
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggt-gggctagtttagcttctt 78  Q
    ||||| |||||||||||||||||||| || ||||  |||||| ||||||||||||||||| ||||||||||||||||||    
T  5795448 ccttggagtatgctcctcctcaaggtctcaggtttgattctccccagtgccaatttgggtggggctagtttagcttctt 5795370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 2732043 - 2732108
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| || || ||||| |||||| || ||||||||||||||||||||||||||||||||    
T  2732043 ctcctcctcaaagtctcaggttcgattctctccggtgccaatttgggtgggctagtttagcttctt 2732108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 23378003 - 23378070
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| | |||||||||||| | ||||||||||||||||||    
T  23378003 tgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttagcttctt 23378070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 30938257 - 30938181
Alignment:
Q  2 cttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||| ||||||||||| |||| || ||||| |||||| ||| ||||||||| |||||| ||||||||||||||    
T  30938257 cttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttctt 30938181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 8325418 - 8325344
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||| ||| ||||| |||||||||| |  ||||| |||||| || ||| |||||||||||||||||||||||||    
T  8325418 ccttggagtgtgctcatcctcaaggtcttaggttcgattctccccggtgtcaatttgggtgggctagtttagctt 8325344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 26356885 - 26356931
Alignment:
Q  32 gttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| |||||| ||||||||||||| |||||||||||||||||||||    
T  26356885 gttcgattctccccagtgccaatttaggtgggctagtttagcttctt 26356931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32992649 - 32992726
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| ||  |||| |||||| || ||| ||||||| |||| |||||||||||||||    
T  32992649 ccttggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttctt 32992726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 51622522 - 51622599
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| || ||||| | |||| |  |||||||||||||||||| | |||||||||||    
T  51622522 ccttggagtgtgctcctcctcaaggtctcaggttcgactctctctggtgccaatttgggtgggccaatttagcttctt 51622599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 19238606 - 19238542
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||||||| |||| || ||||| |||||| || || ||||||||||||||||| ||||||||    
T  19238606 tgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaatttagctt 19238542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 56440448 - 56440516
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtg-ccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||| ||||| |||||||| |||||| || | | ||||||||||||||||| |||||||||||    
T  56440448 tgctcctccttaaggtctccggttcgattctccccgggggccaatttgggtgggctaatttagcttctt 56440516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 7292827 - 7292760
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||||| | |||||||||||| | ||| ||||||||||||||    
T  7292827 tgctcctcctcaaagtctcaggttcgattctctctagtgccaatttgagggggttagtttagcttctt 7292760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 7949483 - 7949416
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| |  ||| |||||| ||||||||| |||||||||||    
T  7949483 tgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttctt 7949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 8030233 - 8030166
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| ||  |||| |||| | | |||| |||||||||||||||| |||||||||||    
T  8030233 tgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 8030166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 9693527 - 9693460
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||||||||||| |||| ||||||    
T  9693527 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaccttctt 9693460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 51954157 - 51954228
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||||| |||| || ||||  ||| || || ||| |||||||||||||||| |||||||||||    
T  51954157 agtatgctcctcctcgaggtctcaggtttgattatctccggtgtcaatttgggtgggctaatttagcttctt 51954228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 21344854 - 21344927
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||| ||| |||||||| ||||||| ||  ||||||||||| |||||| |||||| ||||||||||||| ||||    
T  21344854 ccttggagtgtgctcctc-tcaaggtctcatgttcaattctccccagtgtcaatttaggtgggctagtttggctt 21344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 44865381 - 44865442
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    |||||||||||||||| |  ||||| |||||| || |||||||||| ||||| |||||||||    
T  44865381 tgctcctcctcaaggtcttaggttcgattctcccctgtgccaatttcggtggactagtttag 44865442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 38838835 - 38838911
Alignment:
Q  2 cttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| |||||||||||||||||||| |  ||||| |||||| ||  || |||||| ||||||||| ||||| |||||    
T  38838835 cttggagtatgctcctcctcaaggtcttaggttcgattctctccgatggcaatttcggtgggctaatttagtttctt 38838911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 39509117 - 39509181
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||||||| |||| || ||||| |||||| |||||| |||||| |||||| || ||||||||    
T  39509117 tgctcctcctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaatttagctt 39509181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 55427229 - 55427165
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||| ||| |||| || ||||| ||||||  | |||||||||||||||||||| ||||||||    
T  55427229 tgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaatttagctt 55427165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 26688902 - 26688979
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| || |||||| ||||  | |||| ||||||||||||||||||||||||||||    
T  26688902 ccttggagtgtgctcctcctcaaggtctcaggttcagttcttcctagtgtcaatttgggtgggctagtttagcttctt 26688979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 2203539 - 2203603
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    |||||||||||||||| || || ||||||||| || |||||||||||||||||||| ||||||||    
T  2203539 tgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaatttagctt 2203603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 11793560 - 11793483
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| |  ||||  |||||  || ||||||||||||||||||||||||||||||||    
T  11793560 ccttggagtgtgctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagtttagcttctt 11793483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6536567 - 6536634
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || |||||||||||| |  |||||||||| |||||| || |||||||||||    
T  6536567 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttctt 6536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 11819823 - 11819890
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||||||||||| |||||||||||    
T  11819823 tgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggctaatttagcttctt 11819890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 28783107 - 28783174
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| ||  |||| ||||||  | |||||||||||||||||||| |||||||||||    
T  28783107 tgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaatttagcttctt 28783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 28787525 - 28787458
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||  |||||| ||||||||||||| ||||||  |||||||||||||    
T  28787525 tgctcctcctcaaggtctcaggtttgattctccccagtgccaatttaggtgggaaagtttagcttctt 28787458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 35287763 - 35287824
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    |||||||||||||||| ||  |||| |||||| || |||||||||||||||| |||||||||    
T  35287763 tgctcctcctcaaggtatcatgttcgattctctccggtgccaatttgggtggactagtttag 35287824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 968409 - 968476
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || ||||| |||||| ||  ||||||||| ||||||||| |||||||||||    
T  968409 tgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 16852387 - 16852454
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || ||||| ||||||   ||||||||||| ||||||||| |||||||||||    
T  16852387 tgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctattttagcttctt 16852454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 33727902 - 33727835
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||| ||||||| |||||||||||    
T  33727902 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttagcttctt 33727835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 40872923 - 40872990
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||| ||||||| |  ||||| |||||| || |||||||||| |||||||||||||| ||||||    
T  40872923 tgctcctcttcaaggttttaggttccattctctccggtgccaatttaggtgggctagtttaacttctt 40872990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 44780143 - 44780076
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||  |||| | | |||| |||||||||||||||| |||||||||||    
T  44780143 tgctcctcctcaaggtctcaggtttgattccctctagtgtcaatttgggtgggctaatttagcttctt 44780076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 23361678 - 23361617
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    |||||||||||||||| || |||||||||||| |  ||| |||||| ||||||||| |||||    
T  23361678 tgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaatttag 23361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 3078607 - 3078647
Alignment:
Q  38 ttctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  3078607 ttctccccggtgccaattttggtgggctagtttagcttctt 3078647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 43594344 - 43594280
Alignment:
Q  14 tcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || ||||| |||||| | |||| |||||||| ||||||| ||||| |||||    
T  43594344 tcctcctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaatttagtttctt 43594280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 279981 - 279916
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||| ||||| || |||||||||||| || |||||||||||||||||||| |||||||||||    
T  279981 ctcctccttaaggtctcaggttcaattctctccggtgccaatttgggtgggctaatttagcttctt 279916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 11720989 - 11720922
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||| ||||| || | ||| |||||| ||||||||||||||||||||||| |||||||||||    
T  11720989 tgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaatttagcttctt 11720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 38374628 - 38374563
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttc 76  Q
    |||||||||||||||| |  ||||| |||||| || |||||||||| |||||||||||||||||||    
T  38374628 tgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 5273619 - 5273552
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| |  ||||  ||| || || ||||||||||||||||||||||||||||||||    
T  5273619 tgctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtgggctagtttagcttctt 5273552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 17041041 - 17040974
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| | ||||||||||||||||||  | |||||||||||    
T  17041041 tgctcctcctcaaggtctcaggttcgattctctcaagtgccaatttgggtgggtcaatttagcttctt 17040974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 19553500 - 19553567
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| |  |||||||||||| || || ||||||| ||||||||| |||||||||||    
T  19553500 tgctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactttagcttctt 19553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 31835230 - 31835306
Alignment:
Q  2 cttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||| |||||||||||||||| || ||||| ||| || |  |||||||||| || ||||||||||||||||||    
T  31835230 cttggagtgtgctcctcctcaaggtctcaggttcgattatccctggtgccaattttggcgggctagtttagcttctt 31835306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 20468356 - 20468286
Alignment:
Q  8 gtatgctcctcctcaaggtgtccggttcaattctcaccag-tgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||| |||||||||| |  ||||| |||||| |||| |||||||||||||||||||||||| ||||||    
T  20468356 gtatgctcgtcctcaaggtcttaggttcgattctc-ccagatgccaatttgggtgggctagtttaacttctt 20468286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 21558175 - 21558242
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| |  |||||||||| |||||| || |||||||||||    
T  21558175 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttctt 21558242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 39631887 - 39631958
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||||||||||||||| || ||||| |||||| |  ||||||||||| | ||| ||||||||||||||    
T  39631887 agtaagctcctcctcaaggtctcaggttcgattctctcttgtgccaatttgagggggttagtttagcttctt 39631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 43590954 - 43591021
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||||| | ||||||||||  ||||||||| |||||||||||    
T  43590954 tgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttctt 43591021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 41487411 - 41487473
Alignment:
Q  16 ctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| || ||||| |||||  || |||||||||| ||||||||| |||||||||||    
T  41487411 ctcctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatttagcttctt 41487473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2882987 - 2883052
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggcta 66  Q
    ||||| ||| |||||||||||||||| || |||||||||||| |  ||| |||||| |||||||||    
T  2882987 ccttggagtgtgctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggcta 2883052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5579273 - 5579196
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| || ||||  | |||| || ||||||||||||||||| || ||| |||||||    
T  5579273 ccttggagtgtgctcctcctcaaggtctcaggtttgactctccccggtgccaatttgggtgggataatttcgcttctt 5579196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 18056804 - 18056743
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    |||||||||| ||||| || ||||| |||||| || |||| ||||||||||||||| |||||    
T  18056804 tgctcctcctgaaggtctcaggttcgattctccccggtgctaatttgggtgggctaatttag 18056743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48125213 - 48125137
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||  ||||| || ||||||||| || || |||||||||| ||||||||||||| |||||||    
T  48125213 ccttggagtgtgctcctccg-aaggtctcaggttcaattttccccggtgccaatttcggtgggctagtttggcttctt 48125137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 42712005 - 42712069
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    |||||||||||||||| ||  |||| |||||| | |||| |||||| ||||||||| ||||||||    
T  42712005 tgctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaatttagctt 42712069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 16457847 - 16457924
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| ||  ||||||||||| || ||||||||||| |||||||||||||| |||||    
T  16457847 ccttggagtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagtttaggttctt 16457924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 30883227 - 30883172
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggcta 66  Q
    |||||||||||||||| ||  |||||||||||||||||| ||||||||||||||||    
T  30883227 tgctcctcctcaaggtctcaagttcaattctcaccagtgtcaatttgggtgggcta 30883172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 18974007 - 18974071
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||||||||||||||| ||||| |||||| |  ||||||||||| ||||| |||||||||||    
T  18974007 tgctcctcctcaaggtgtcaggttcgattctccctggtgccaatttgagtgggttagtttagctt 18974071  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 28285299 - 28285366
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||  | |||| |||||||||||||||| |||||||||||    
T  28285299 tgctcctcctcaaggtatcgggttcgattctttctagtgtcaatttgggtgggctaatttagcttctt 28285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 84871 - 84938
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| ||  |||| |||||| || |||||| | ||||||||||| |||||||||||    
T  84871 tgctcctcctcaaggtctcaagttcgattctccccggtgccattatgggtgggctaatttagcttctt 84938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 4793089 - 4793042
Alignment:
Q  31 ggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  4793089 ggttcgattctccccagtgccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 35360115 - 35360048
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| |||||| |||| || ||||| ||||||||| |||||||||| |||| || |||||||||||||    
T  35360115 tgcttctcctcgaggtctcaggttcgattctcaccggtgccaatttaggtgagcgagtttagcttctt 35360048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 35705042 - 35705100
Alignment:
Q  20 tcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||| || ||||| |||||| || ||| |||||||||||||||| |||||||||||    
T  35705042 tcaaggtctcaggttcgattctccccggtgtcaatttgggtgggctaatttagcttctt 35705100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 18206640 - 18206608
Alignment:
Q  46 agtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||||||||||| |||||||||||    
T  18206640 agtgccaatttgggtgggctaatttagcttctt 18206608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41908677 - 41908600
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| ||  |||| ||| || || ||||||||||||||||||||||||||||||||    
T  41908677 ccttggagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagtttagcttctt 41908600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30359691 - 30359766
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttct 77  Q
    ||||| ||| |||||||||||||||| ||   ||| |||||| ||||||||||||||||||||||||||||||||||    
T  30359691 ccttggagtgtgctcctcctcaaggtctcat-ttcgattctccccagtgccaatttgggtgggctagtttagcttct 30359766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 37480122 - 37480189
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| || || ||||||||||||||||| |||||||||||    
T  37480122 tgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 42327424 - 42327357
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| ||||||  | |||||||||||||||||||| |||||| ||||    
T  42327424 tgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaatttagcatctt 42327357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 12086158 - 12086091
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | || |||| ||||| ||||||||| |||||||||||    
T  12086158 tgctcctcctcaaggtctcgggttcgattccctccggtgctaatttaggtgggctaatttagcttctt 12086091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 21195705 - 21195638
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||| ||||||| |||||||||||    
T  21195705 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttagcttctt 21195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 23052552 - 23052485
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||||||||||| || ||||| |||||| | ||||||| ||||||||||||| ||||| |||||    
T  23052552 tgcttctcctcaaggtctcaggttcgattctccctagtgccagtttgggtgggctaatttagtttctt 23052485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 42602601 - 42602668
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||| |||||||| |  ||||  |||||| || |||||||||||||||||||| |||||||||||    
T  42602601 tgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaatttagcttctt 42602668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 45672417 - 45672346
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    ||||| |||||| |||||||| |||| || ||||||||||||  | ||| ||||||||||||| ||||||||    
T  45672417 ccttggagtatgttcctcctctaggtctcaggttcaattctcctccgtgtcaatttgggtgggttagtttag 45672346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 31159644 - 31159599
Alignment:
Q  33 ttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||   |||| ||||||||||||||||||||||||||||    
T  31159644 ttcaattctccttagtgtcaatttgggtgggctagtttagcttctt 31159599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 21213819 - 21213883
Alignment:
Q  14 tcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||  |||| || ||||| |||||| || |||||||||| ||||||||||||| |||||||    
T  21213819 tcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggctagttttgcttctt 21213883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 36176780 - 36176844
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagttta 71  Q
    ||||| |||||||||||||| |   |||||||||| || |||||||||||||| ||| |||||||    
T  36176780 agtatactcctcctcaaggtattaagttcaattcttactagtgccaatttgggcgggttagttta 36176844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 39715039 - 39715103
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||||||| |||| || ||||| |||||| ||||  ||||||| ||||||||| ||||||||    
T  39715039 tgctcctcctcgaggtctcaggttcgattctccccagcaccaatttaggtgggctaatttagctt 39715103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31605887 - 31605810
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| ||  |||| |||||| || ||||||||||||||||||||||||||| ||||    
T  31605887 ccttgaagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagtttagcctctt 31605810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 36428749 - 36428826
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| |||||||||||||||||||| ||  |||  |||||| || |||||||||||||||||||||||| |||||||    
T  36428749 ccttggagtatgctcctcctcaaggtctcatgtttgattctccccggtgccaatttgggtgggctagttttgcttctt 36428826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 45266881 - 45266945
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    |||||||||||||||| || ||||| |||||| || |||||||||||| ||||||||||||||||    
T  45266881 tgctcctcctcaaggtctcaggttcgattctccccggtgccaatttggatgggctagtttagctt 45266945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 51814541 - 51814605
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    |||||||||||||||| || ||||| |||||| || |||||||||||||||||||| ||||||||    
T  51814541 tgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaatttagctt 51814605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 43446000 - 43446074
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||| ||| |||||||||||||||| ||  |||| |||||| || ||||||||||| |||||||||||||||||    
T  43446000 ccttggagtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctt 43446074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 6122841 - 6122908
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||||||||||| |||||||||||    
T  6122841 tgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 6122908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 15065012 - 15065079
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| |||||||||| || ||||||||| || || ||| |||||||||||||||| |||||||||||    
T  15065012 tgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagcttctt 15065079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 40257446 - 40257513
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| ||  ||||||||||  || ||| ||||||||||||||||||||||||||||    
T  40257446 tgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagtttagcttctt 40257513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 44961812 - 44961879
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||| ||| || ||||| |||||| | |||| |||||||||||||||| |||||||||||    
T  44961812 tgctcctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttctt 44961879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 52116810 - 52116743
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || |||||||||||| | ||||||||||  ||||||||| |||||||||||    
T  52116810 tgctcctcctcaatgtctcaggttcaattctccctagtgccaattaaggtgggctaatttagcttctt 52116743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 39966142 - 39966207
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||| || |||||  ||||| || |||| |||||||||| ||||||||||||||||    
T  39966142 ctcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttctt 39966207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 2799909 - 2799976
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| |  ||||||||||| | ||| ||||||||||||||    
T  2799909 tgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagcttctt 2799976  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 3799953 - 3800020
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| | || || ||||| |||||| | ||||||||||| ||||||||| |||||||||||    
T  3799953 tgctcctcctcgaagtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttctt 3800020  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 8177211 - 8177144
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||||| |  ||||||||||| | ||| ||||||||||||||    
T  8177211 tgctcctcctcaaggtttcaggttcgattctctctggtgccaatttgagggggttagtttagcttctt 8177144  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 24019070 - 24019137
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| |  ||||| ||||||  | || ||||||| |||||||||||||||||||||    
T  24019070 tgctcctcctcaaggtcttaggttcgattctcctcggtaccaatttcggtgggctagtttagcttctt 24019137  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 51281398 - 51281465
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||  |||||| || | ||||||||||||  ||||||||||||||||    
T  51281398 tgctcctcctcaaggtctcaggtttgattctctccggcgccaatttgggtaagctagtttagcttctt 51281465  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17297021 - 17297099
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccag-tgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| ||  |||  |||||| || | ||||||||||||||||||| |||||||||||    
T  17297021 ccttggagtgtgctcctcctcaaggtctcatgtttgattctcccccggtgccaatttgggtgggctaatttagcttctt 17297099  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19940911 - 19940834
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||| ||||| || ||||  |||||| || ||||||||||  ||||||| ||||||||||||    
T  19940911 ccttggagtgtgctcctccttaaggtctcaggtttgattctctccggtgccaatttatgtgggctggtttagcttctt 19940834  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 30203254 - 30203189
Alignment:
Q  13 ctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||| || |||||||||||| ||  ||||||||| ||  ||||| |||||||||||    
T  30203254 ctcctcctcaaggtctcaggttcaattctctccgatgccaattttggctggctaatttagcttctt 30203189  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 19716244 - 19716309
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttc 76  Q
    |||||||||||||||| || ||||| |||||| || ||| |||||||||||||||| |||||||||    
T  19716244 tgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaatttagcttc 19716309  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 44069796 - 44069872
Alignment:
Q  2 cttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||| |||||||||||||||| || ||||  |||||  || |||||||||| |||||||||||||||||||||    
T  44069796 cttggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttctt 44069872  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 47454655 - 47454579
Alignment:
Q  2 cttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||| ||| ||||||||||| |||| || ||||| |||||| ||| ||||||||| |||||| ||||||||||||||    
T  47454655 cttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttctt 47454579  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 8075156 - 8075089
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||| || ||||| |||| | | |||| |||||||||||||||| |||||||||||    
T  8075156 tgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 8075089  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 30715789 - 30715855
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||||| || |||||||||||| |||||||||||||||||||    
T  30715789 tgctcctcctcaatgtttcaggttcgattctctcc-gtgccaatttggatgggctagtttagcttctt 30715855  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 44743884 - 44743817
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || ||||| ||| || |||||||||||||||||||| || |||||||||||    
T  44743884 tgctcctcctcgaggtctcaggttcgattatctccagtgccaatttgggtgggttaatttagcttctt 44743817  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 4844540 - 4844473
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || || || |||||| || ||||||||||| |||||||| |||||||||||    
T  4844540 tgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4844473  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 4870236 - 4870169
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || || || |||||| || ||||||||||| |||||||| |||||||||||    
T  4870236 tgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4870169  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 14339657 - 14339724
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||| || || ||||| |||||| | ||||||||||  ||||||||| |||||||||||    
T  14339657 tgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttctt 14339724  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 20501743 - 20501809
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||| ||||| || ||||| |||||| |||||||||||||| | |||||| |||||||||||    
T  20501743 tgctcctccttaaggtctcaggttcgattctctccagtgccaatttgag-gggctaatttagcttctt 20501809  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 30232377 - 30232440
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagct 74  Q
    |||||||||||| ||| || ||||| |||||| || |||||||||||| ||||||| |||||||    
T  30232377 tgctcctcctcatggtctcaggttccattctctccggtgccaatttggttgggctaatttagct 30232440  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 36720428 - 36720495
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||| |||| || ||||| |||||| | |||| |||||| |||||||| ||||||||||||    
T  36720428 tgctcctcctcgaggtttcaggttcgattctctctagtgtcaatttaggtgggctggtttagcttctt 36720495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 37944836 - 37944769
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagttt 70  Q
    ||||| ||| |||||||| ||||||| || |||||||||||| | |||| ||||||||||||||||||||    
T  37944836 ccttggagtgtgctcctc-tcaaggt-tcaggttcaattctcccaagtgtcaatttgggtgggctagttt 37944769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 47237000 - 47236935
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttc 76  Q
    |||||||| ||||||| ||  |||| |||||| || |||||||||||||||||||  |||||||||    
T  47237000 tgctcctcttcaaggtctcatgttcgattctccccggtgccaatttgggtgggcttatttagcttc 47236935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 53412992 - 53413053
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttag 72  Q
    |||||||||||||||| || |||||||||||| |  ||||||||||| | ||| ||||||||    
T  53412992 tgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgagggggttagtttag 53413053  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 28531091 - 28531023
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagctt 75  Q
    ||||||||||||||| |||| |  || ||||||||| |  ||| |||||||||||||||| ||||||||    
T  28531091 agtatgctcctcctcgaggtcttaggctcaattctctctggtgtcaatttgggtgggctaatttagctt 28531023  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 28766519 - 28766547
Alignment:
Q  50 ccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||||||||||||||||    
T  28766519 ccaatttgggtgggctagtttagcttctt 28766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 40063662 - 40063734
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttg-ggtgggctagtttagcttctt 78  Q
    |||||||||||||| ||||| ||  |||| |||||| |||||||||||||| || ||  ||||||||||||||    
T  40063662 agtatgctcctccttaaggtctcaagttcgattctctccagtgccaatttgagggggtttagtttagcttctt 40063734  T

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Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 15810 - 15739
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    |||||||||||||||||||| ||  |||  ||||||  | |||||||||||||||||||| |||||||||||    
T  15810 agtatgctcctcctcaaggtctcaagtttgattctccgcggtgccaatttgggtgggctaatttagcttctt 15739  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 41666 - 41595
Alignment:
Q  7 agtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||||||||||||| |||| || |||||||||||| |   || |||||||||||||||| |||||| ||||    
T  41666 agtatgctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaatttagcctctt 41595  T

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Target: scaffold0337 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1790 - 1867
Alignment:
Q  1 ccttgcagtatgctcctcctcaaggtgtccggttcaattctcaccagtgccaatttgggtgggctagtttagcttctt 78  Q
    ||||| ||| |||||||||||||||| |  |||||||||||| || ||  |||||| |||||| ||||||| ||||||    
T  1790 ccttggagtttgctcctcctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttctt 1867  T

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Target: scaffold0260 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 15349 - 15316
Alignment:
Q  11 tgctcctcctcaaggtgtccggttcaattctcac 44  Q
    ||||||||||||||||||| ||||||||||||||    
T  15349 tgctcctcctcaaggtgtcaggttcaattctcac 15316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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