View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5715-Insertion-2 (Length: 832)
Name: NF5715-Insertion-2
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-2 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 718; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 8 - 832
Target Start/End: Complemental strand, 11684971 - 11684130
Alignment:
| Q |
8 |
taaacatggtgcaaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684971 |
taaacatggtgcaaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatg |
11684872 |
T |
|
| Q |
108 |
ccatctgcctttcagattcggtatggtggattcaaaggagttgtggctgttgatccaacctcatctgtgaagttgtcactgaggaagagtatgcacaagt |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11684871 |
ccatctgcctttcagattcggtattgtggattcaaaggagttgtggctgttgatccaacctcatctttgaagttgtcactgaggaagagtatgcacaagt |
11684772 |
T |
|
| Q |
208 |
atgattcagataacataaaattggatgttttggcatgtagtaagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684771 |
atgattcagataacataaaattggatgttttggcatgtagtaagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgt |
11684672 |
T |
|
| Q |
308 |
caaggacagtgttttcgagaaaaaacagagagaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatg |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
11684671 |
caaggacagtgttttcgaaaaaaaacagagaaaagttgttaatcaactgaacacaatactaactgattcaatgaaggcacacgaggttttggacttgatg |
11684572 |
T |
|
| Q |
408 |
ttttccggagaggtcactaatattctgaaggagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttaggg |
507 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684571 |
ttttctggagaggtcgctaatattctgaaggatatgcttatttgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttaggg |
11684472 |
T |
|
| Q |
508 |
catcaaagttgttagaattgcgacaaagaactagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatgg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11684471 |
catcaaagttgttagaattgcgacaaagaactaggatatttattccgaaaggaagaacaatgatgggtgttctagatgaaactagaaccctagaatatgg |
11684372 |
T |
|
| Q |
608 |
tgaagtttttgttcaatattccaacaaaaggctcagcagtctttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggt |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684371 |
tgaagtttttgttcaatattccaacaaaaggctcagcggtctttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggt |
11684272 |
T |
|
| Q |
708 |
gatgtgcgtgttttgaaggctgtggacg-----------------atggtggattgtgttgttttccctcaaaaaggccacaggtagatatattctttaa |
790 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11684271 |
gatgtgcgtgttttgaaggctgtggacgtgcctgctttgcgccacatggtggattgtgttgtattccctcaaaaaggccacaggtagatatattctttaa |
11684172 |
T |
|
| Q |
791 |
tatgaatctgatctaacatttaaatatcgggtcccataaaaa |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11684171 |
tatgaatctgatctaacatttaaatatcgggtccaataaaaa |
11684130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 49 - 832
Target Start/End: Complemental strand, 11677193 - 11676393
Alignment:
| Q |
49 |
ggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatgccatctgcctttcagattcggtatggtggattcaaaggagt |
148 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| ||||| | ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11677193 |
ggaaaatatctcttgaacttgccaggacagtggctaaagcatgtgattatgattctatgccatctgcctttcagattcggtatcgtggattcaaaggagt |
11677094 |
T |
|
| Q |
149 |
tgtggctgttgatccaacctcatctgtgaagttgtcactgaggaagagtatgcacaagtatgattcagataacataaaattggatgttttggcatgtagt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||| | | ||||||||||||||||||||| |
|
|
| T |
11677093 |
tgtggctgttgatccaacctcatctgtgaagttgtcactgaggatgagcatgcgcaagtatgattcagttaacgcagatttggatgttttggcatgtagt |
11676994 |
T |
|
| Q |
249 |
aagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgtcaaggacagtgttttcgagaaaaaacagagagaagctgtta |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
11676993 |
aagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgtcaaggacagtgttttcgaaaaaaaacagagaaaagttgtta |
11676894 |
T |
|
| Q |
349 |
atcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagaggtcactaatattctgaaggagatgcttat |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
11676893 |
atcaactgaacacaatactaactgattcaatgaaggcacacgaggttttggacttgatgttttctggagaggtcgctaatattctgaaggatatgcttat |
11676794 |
T |
|
| Q |
449 |
atgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgacaaagaactagaatattt |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11676793 |
ttgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgttagaattgcgacaaagaactaggatattt |
11676694 |
T |
|
| Q |
549 |
attccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgttcaatattccaacaaaaggctcagcagtc |
648 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
11676693 |
attccgaaaggaagagcaatgatgggtgttctagatgaaactagaaccctagaatatggtgaagtttttgttcaatattctcacaaaaggcacagctgtc |
11676594 |
T |
|
| Q |
649 |
tttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggtgatgtgcgtgttttgaaggctgtggacg------------- |
735 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11676593 |
tttctcatgttgtgaaaggtgaggtagtagtagcaaaaaatccctgcttgcacccgggtgatgtgcgtgttttgaaggctgtggacgtgcctgctttgcg |
11676494 |
T |
|
| Q |
736 |
----atggtggattgtgttgttttccctcaaaaaggccacaggtagatatattctttaatatgaatctgatctaacatttaaatatcgggtcccataaaa |
831 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11676493 |
ccacatggtggattgtgttgttttccctcaaaaaggtcacaggtaggtatattcttcaatatgaatctgatctaacatttaaatatcgggtccaataaaa |
11676394 |
T |
|
| Q |
832 |
a |
832 |
Q |
| |
|
| |
|
|
| T |
11676393 |
a |
11676393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 793
Target Start/End: Original strand, 11637575 - 11638377
Alignment:
| Q |
8 |
taaacatggtgcaaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatg |
107 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
11637575 |
taaacatggtgcaaccgaatatgtcttctctgatggaatcggaaaaatatctcttgaacttgccaggagggtggctaaaaaatgtggtcatgattcagtg |
11637674 |
T |
|
| Q |
108 |
ccatctgcctttcagattcggtatggtggattcaaaggagttgtggctgttgatccaacctcatctgtgaagttgtcactgaggaagagtatgcacaagt |
207 |
Q |
| |
|
|||||||| ||||||||| ||||||| || | ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11637675 |
ccatctgcgtttcagattaggtatggcgggtacaaaggagtcgtagctgttgatccaacctcgtctgtgaagttgtcactgaggaagagtatgcacaagt |
11637774 |
T |
|
| Q |
208 |
atgattcagataacataaaattggatgttttggcatgtagtaagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| ||||| ||||| |
|
|
| T |
11637775 |
atgattcagataacataaaattggatgttctggcatgtagtaagtttcagccttgttatctcaatcgacaattgattactctcttatgtactcttgatgt |
11637874 |
T |
|
| Q |
308 |
caaggacagtgttttcgagaaaaaacagagagaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatg |
407 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||||| |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
11637875 |
caaggacagtgttttcgagaaaaaacaaaaagaagctgttactcaactgaacacgatactaacagattcaactaaggcacatgaggttttggacttgatg |
11637974 |
T |
|
| Q |
408 |
ttttccggagaggtcactaatattctgaaggagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttaggg |
507 |
Q |
| |
|
| |||||| || |||||||||||||| |||||||||||||| ||||||||||||||| || | || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
11637975 |
tgttccggtgaagtcactaatattctcaaggagatgcttatctgtggctacaagcctgatgttgagccatttctttcaatgatgctgcagacatttaggg |
11638074 |
T |
|
| Q |
508 |
catcaaagttgttagaattgcgacaaagaactagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatgg |
607 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
11638075 |
catcaaagttgttggaattgcgacaaaaaactaggatatttattccaaaaggaagagcaatgatgggagttctagatgaaactagaaccttagaatatgg |
11638174 |
T |
|
| Q |
608 |
tgaagtttttgttcaatattccaacaaaaggctcagcagtctttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggt |
707 |
Q |
| |
|
|||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| || || |||| ||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
11638175 |
ggaagtttttgttcaatattctagcaataggttcagcagtcattctcgtgtagttaagggtatggtcatagtagcgaaaaatccctgcttgcacccgggc |
11638274 |
T |
|
| Q |
708 |
gatgtgcgtgttttgaaggctgtggacg-----------------atggtggattgtgttgttttccctcaaaaaggccacaggtagatatattctttaa |
790 |
Q |
| |
|
||||| ||||||||||| || ||||| | |||||||||||||||||||| ||||||||||| ||||||||||| ||||||| || |
|
|
| T |
11638275 |
gatgttcgtgttttgaaagccgtggatgtgcctgctttgcgccacatggtggattgtgttgtttttcctcaaaaaggtcacaggtagatctattcttaaa |
11638374 |
T |
|
| Q |
791 |
tat |
793 |
Q |
| |
|
||| |
|
|
| T |
11638375 |
tat |
11638377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 733
Target Start/End: Original strand, 11628818 - 11629531
Alignment:
| Q |
20 |
aaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatgccatctgccttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||| || ||||| |
|
|
| T |
11628818 |
aaccaaatatgtcttctctgatggaattggcaaaatatctcttgaacttgccaggagagtggctcaaaaatgtggttatgattctatgccgtccgccttc |
11628917 |
T |
|
| Q |
120 |
cagattcggtatggtggattcaaaggagttgtggctgttgatccaacctcatctgtgaagttgtcactgaggaagagtatgcacaagtatgattcagata |
219 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||| ||||||||||||||| | |
|
|
| T |
11628918 |
cagattcggtatggtgggtacaaaggagttgtggctgttgatccaacctcatcggtgaaattgtcactgaggatgagcatgctcaagtatgattcagaca |
11629017 |
T |
|
| Q |
220 |
acataaaattggatgttttggcatgtagtaagttccagccttgttatctgaatcggcagttgattactctcttatccactctcgatgtcaaggacagtgt |
319 |
Q |
| |
|
||| | | |||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
11629018 |
acacagatttggatgttttggcatgtagtaagtttcggccttgttatctgaatcgacagttgattactctcttatccactcttgatgtcgaggacagtgt |
11629117 |
T |
|
| Q |
320 |
tttcgagaaaaaacagagagaagctgttaatcaactgaacacaatactaactgattcaacgaaggcccacgaggttttggacttgatgttttccggagag |
419 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||||| ||| |
|
|
| T |
11629118 |
tttcgagaaaaaacaaaaagaagctgttgatcaactgaacacaatactaactgattcgacaaaggcacacgaggttttggacttgatgtcttccggggag |
11629217 |
T |
|
| Q |
420 |
gtcactaatattctgaaggagatgcttatatgtggctacaagcctaatatagaaccatttctttcaatgatgctccagacatttagggcatcaaagttgt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||| || || | | |
|
|
| T |
11629218 |
gtcactaatattctgaaggagatgcttatttgtggttacaagcctaatgttgaaccatttctttcaatgatgctgcagacatttagggcctcgaaacttt |
11629317 |
T |
|
| Q |
520 |
tagaattgcgacaaagaactagaatatttattccgaaaggaagagcaatgatgggtgttctagatgaaactagaactctagaatatggtgaagtttttgt |
619 |
Q |
| |
|
| |||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11629318 |
tggaattgcggcaaaaaactaggatatttattccaaaaggaagagcaatgatgggagttctagatgaaactagaaccctagaatatggtgaagtttttgt |
11629417 |
T |
|
| Q |
620 |
tcaatattccaacaaaaggctcagcagtctttctcatgttgtgaaaggtaaggtagtagtagcaaaaaatccatgcttgcacccgggtgatgtgcgtgtt |
719 |
Q |
| |
|
||||||||| ||||| ||| ||||||||||||||| || || || ||||| || ||||||||||| || |||||| |||| |||||||| |||||| |
|
|
| T |
11629418 |
tcaatattctaacaatagggaagacagtctttctcatgtagttaacggcaaggttgttgtagcaaaaaacccgtgcttgtacccaggtgatgttcgtgtt |
11629517 |
T |
|
| Q |
720 |
ttgaaggctgtgga |
733 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11629518 |
ttgaaggctgtgga |
11629531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 11688983 - 11688769
Alignment:
| Q |
8 |
taaacatggtgcaaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11688983 |
taaacatggtgcaaccaaatatgtcttctctgatggaatcgggaaaatatctattgaacttgccaggagagtggctaaaaaatgtggtcatgattcaatg |
11688884 |
T |
|
| Q |
108 |
ccatctgcctttcagattcggtatggtggattcaaaggagttgtggctgttgatccaacctcatctgtgaagttgtcactgaggaagagtatgcacaagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11688883 |
ccatctgcctttcagattcggtatggtggattcaaaggagttgtggctgttgatccaacctcatctttgaagttgtcactgaggaagagtatgcacaagt |
11688784 |
T |
|
| Q |
208 |
atgattcagataaca |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11688783 |
atgattcagataaca |
11688769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 736 - 787
Target Start/End: Original strand, 11629551 - 11629602
Alignment:
| Q |
736 |
atggtggattgtgttgttttccctcaaaaaggccacaggtagatatattctt |
787 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
11629551 |
atggtggactgtgttgtttttcctcaaaaaggtcacaggtagatatattctt |
11629602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University