View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715-Insertion-4 (Length: 547)
Name: NF5715-Insertion-4
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 5 - 547
Target Start/End: Original strand, 6258840 - 6259394
Alignment:
| Q |
5 |
acaccaaataattgatctggtgaatcactccaaagttgctataaaaagggcttccattaccctgctagaaatgctgcagtaggtgttggtacattacagg |
104 |
Q |
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| T |
6258840 |
acaccgaataattgatctggtgaatcactccaaagttgctataaaaagggcttccattaccctgctagaaatgctgcagtaggtgttggtacattacagg |
6258939 |
T |
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| Q |
105 |
gataatataaacctgaagtactttctgcactctgcaatatctcaacactattttattc------------tactttcacacctcccacctcttcccatac |
192 |
Q |
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| T |
6258940 |
gataatataaacctgaagtactttctgcactctgcaatatctcaacactattttattctactgcaaattctactttcacacctcccacctcttcccatac |
6259039 |
T |
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| Q |
193 |
tctgccactttcacttttacacctccccattactcctgcagcctctatttttctgcactttctttcttccttccattcctccttgtcttctctctcaaaa |
292 |
Q |
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| T |
6259040 |
tctgccactttcacttttacacctccccattactcctgcagcctctatttttctgcactttctttcttccttccattactccttgtcttctctctcaaaa |
6259139 |
T |
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| Q |
293 |
cattcatggatgaagacatactgaaaaatttgggaaatgttgaaagcaacatggacatgatgacaatgatgatgcaaatggaaaaattctctgattcata |
392 |
Q |
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| T |
6259140 |
cattcatggatgaagacatactgaaaaatttgggaaatgttgaaagcaacatggacatgatgacaatgatgatgcaaatggaaaaattctctgattcata |
6259239 |
T |
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| Q |
393 |
tgaacctttttatagcaacactctcaatctcaatctcaccaacaatgatttcccttatggaaactcaaatgtaacttcatcactcacaccttcattgatc |
492 |
Q |
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| T |
6259240 |
tgaacctttttatagcaacactctcaatctcaatctcaccaacaatgatttcccttatggaaactcaaatgtaacttcatcactcacaccttcattgatc |
6259339 |
T |
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| Q |
493 |
aatccaccattgtcttatcctcttcaacaaccaatgacaccaccgttgcttcaac |
547 |
Q |
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| T |
6259340 |
aatccaccattgtcttatcctcttcaacaaccaatgacaccaccgttgcttcaac |
6259394 |
T |
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