View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715-Insertion-5 (Length: 503)
Name: NF5715-Insertion-5
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 20702405 - 20702661
Alignment:
| Q |
7 |
atctaccattatcttccaacccccaccaccaaacatcatcctcttgggtccgagcatatccttccaaatcctccaacaactcccgtaacaacttcttctc |
106 |
Q |
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| T |
20702405 |
atctaccattatcttccaacccccaccactaaacatcatcttcttgagtccgagtatatccttccaaatcctccaacaactcccgtaacaacttctcctc |
20702504 |
T |
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| Q |
107 |
tcacacnnnnnnnggacgcctccaagtcaacaaccaatgacttcccggaatattaaacacacccaagtcaccaacatttgcttccttttgattcgataaa |
206 |
Q |
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| T |
20702505 |
tcacacaaacaaaggacgcctccaagtgaacaaccaatgacttcccggaatattaaacacacccaagtcaccaacattttcttccttttgatttgataaa |
20702604 |
T |
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| Q |
207 |
gagaaaagtctagggtatttataccggaaagcaacatcccccctccaagccacctcc |
263 |
Q |
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| T |
20702605 |
gagaaaagtctagggtatttataccggaaagcaacatcccccctccaagccacctcc |
20702661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 282 - 503
Target Start/End: Original strand, 20703473 - 20703705
Alignment:
| Q |
282 |
tattatgctaaaggttaacggatactaaacattgttctactacataaagaatctcactttacttgagaatactgattaattgtagtttaga--------- |
372 |
Q |
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| T |
20703473 |
tattatgctaaaggttaacggatattaaacattgttctactacataaagaatctcacgttacttgagaatactgattaattgtagtttagaaacaacact |
20703572 |
T |
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| Q |
373 |
--gactcttcaatccaacgagacgtcttttacaaaagaaaaaattgggaaggctcacacaaggccctcataatacttgaaaatgtgaatctatgtaacac |
470 |
Q |
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| T |
20703573 |
cagactcttcaatccaacgagacgtcttttataaaagaaaaaattgtgaaggctcacacaaggccctcataatacttgaaaatgcgaatctatgtaacac |
20703672 |
T |
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| Q |
471 |
ttgagagattacataccccttagccccttagcc |
503 |
Q |
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| T |
20703673 |
ttgagagattacataccctttagccccttagcc |
20703705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 24844922 - 24844870
Alignment:
| Q |
213 |
agtctagggtatttataccggaaagcaacatcccccctccaagccacctccca |
265 |
Q |
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| T |
24844922 |
agtcttggatatttattccggaaagccacctcccccctccacgccacctccca |
24844870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 265
Target Start/End: Complemental strand, 10238885 - 10238809
Alignment:
| Q |
189 |
tccttttgattcgataaagagaaaagtctagggtatttataccggaaagcaacatcccccctccaagccacctccca |
265 |
Q |
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| T |
10238885 |
tccttttgatttgataaggagaataatcttggatatttataccggaaagcgagattccccctccacgcgacctccca |
10238809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 18943856 - 18943810
Alignment:
| Q |
219 |
gggtatttataccggaaagcaacatcccccctccaagccacctccca |
265 |
Q |
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| T |
18943856 |
gggtatttattccggaaagaaagttcccccctccaagccacctccca |
18943810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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