View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5715-Insertion-6 (Length: 465)
Name: NF5715-Insertion-6
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-6 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 115 - 465
Target Start/End: Complemental strand, 40208017 - 40207667
Alignment:
| Q |
115 |
gaatttgcttttctttatatatattcacagagaagaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40208017 |
gaatttgcttttctttatatatattcacagagaagaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatc |
40207918 |
T |
|
| Q |
215 |
atcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40207917 |
atcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccgagttgagca |
40207818 |
T |
|
| Q |
315 |
atagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatatta |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40207817 |
atagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatatta |
40207718 |
T |
|
| Q |
415 |
gaatttgggtcgagtatgcaaacaaaataaaagacaatacttaattaccgg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40207717 |
gaatttgggtcgagtatgcaaacaaaataaaagtcaatacttaattaccgg |
40207667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 149 - 429
Target Start/End: Complemental strand, 40199664 - 40199384
Alignment:
| Q |
149 |
gaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggca |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| | |
|
|
| T |
40199664 |
gaatttaccaagattggaatgaacagcatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcgcatagaagaatggaa |
40199565 |
T |
|
| Q |
249 |
gtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagacccta |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
40199564 |
gtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagacccta |
40199465 |
T |
|
| Q |
349 |
ccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
40199464 |
ccacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 149 - 421
Target Start/End: Complemental strand, 40203827 - 40203555
Alignment:
| Q |
149 |
gaatttaccaagattggaatgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggca |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
40203827 |
gaatttaccaagattggaatgaacaacatccatgtaagtatagtttctcttgccactgataggatcaccagtacgataacattcacagagaagaatggag |
40203728 |
T |
|
| Q |
249 |
gtgtagtaagtaacccaagcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagacccta |
348 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40203727 |
gtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagacccta |
40203628 |
T |
|
| Q |
349 |
ccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40203627 |
tcacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 40208121 - 40208081
Alignment:
| Q |
10 |
acaaggtttagatactgaactatcccacataacgtgacttg |
50 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40208121 |
acaaggtttagatactgaactatcccacataacgtgacttg |
40208081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 40203989 - 40203947
Alignment:
| Q |
8 |
caacaaggtttagatactgaactatcccacataacgtgacttg |
50 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40203989 |
caacaaggttgagatactgaactatcccacataacgtgacttg |
40203947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 40200478 - 40200447
Alignment:
| Q |
19 |
agatactgaactatcccacataacgtgacttg |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40200478 |
agatactgaactatcccacataacgtgacttg |
40200447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 382
Target Start/End: Original strand, 10299650 - 10299851
Alignment:
| Q |
181 |
tgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcat |
280 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||||||||| || |||||||| ||| |||||||||||||| | | || |||| ||| |
|
|
| T |
10299650 |
tgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcat |
10299749 |
T |
|
| Q |
281 |
aacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtc |
380 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||| |
|
|
| T |
10299750 |
cattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtc |
10299849 |
T |
|
| Q |
381 |
ca |
382 |
Q |
| |
|
|| |
|
|
| T |
10299850 |
ca |
10299851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
287 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
386 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
|
|
| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
387 |
gttcctg |
393 |
Q |
| |
|
|||||| |
|
|
| T |
39429274 |
cttcctg |
39429280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
287 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
386 |
Q |
| |
|
||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
|
|
| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
|
| Q |
387 |
gttcc |
391 |
Q |
| |
|
|||| |
|
|
| T |
6249334 |
cttcc |
6249330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University