View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5715-Insertion-7 (Length: 430)
Name: NF5715-Insertion-7
Description: NF5715
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5715-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 64 - 430
Target Start/End: Complemental strand, 36513850 - 36513483
Alignment:
| Q |
64 |
cgagtcaactcaagtgaactcgttgtgtgtttaaattggaagaaattgatatgagctatttttgaggagaaaagatgtgaatgaataaaaatactaaaaa |
163 |
Q |
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| T |
36513850 |
cgagtcaactcaagtgaactcgttgtgtgtttaaattggaagaaattgatatgagctatttttgaggagaaaagatgtgaatgaataaaaatactaaaaa |
36513751 |
T |
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| Q |
164 |
acggaatca-gtgaataaggtagttggagatttattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagt |
262 |
Q |
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| T |
36513750 |
acggaatcaagtgaataaggtagttggagatttattttccctttttatttgatgctatgattgacacattgaatgagaataagcgtgtgaatcgtgaagt |
36513651 |
T |
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| Q |
263 |
tagtgaaagaaaatgtagaaattgtgaataaaaatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaaggg |
362 |
Q |
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| T |
36513650 |
tagtgaaacaaaatgtaaaaattgtgaataaaaatataaatttatggtaaaacgcatttttcaattttgaagtgaagaagagcatgtagtatctcaaggg |
36513551 |
T |
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| Q |
363 |
aaagcgacctatatgattgtactgcctttttaccgacagttagccgacccggttttctttgcttactc |
430 |
Q |
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| T |
36513550 |
aaagtgacctatatgattgtactgcctttttaccgacagttagccgacccggttttctttgcttactc |
36513483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 36513903 - 36513869
Alignment:
| Q |
8 |
aaaacgacggtgttttggtgaagtcgttggattcg |
42 |
Q |
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| T |
36513903 |
aaaacgacggtgttttggtgaagtcgttggattcg |
36513869 |
T |
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